Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for clock3

Gene Name Gene ID Reads Annotation
clock3 clock3 136










Genes with expression patterns similar to clock3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. clock3 clock3 136 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. megf6a ENSDARG00000079199 103 1.727 0.827 - - 0.900 - - - - - multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
3. rapgef1a ENSDARG00000043593 416 1.716 0.833 0.883 - - - - - - - Rap guanine nucleotide exchange factor (GEF) 1a [Source:ZFIN;Acc:ZDB-GENE-081105-26]
4. map4k2l_1 map4k2l_1 77 1.708 - - - 0.908 0.800 - - - -
5. MMP15 MMP15 88 1.701 - 0.767 - - - - 0.934 - -
6. si:dkey-242k1.6 ENSDARG00000101205 112 1.671 - 0.814 - 0.857 - - - - - si:dkey-242k1.6 [Source:ZFIN;Acc:ZDB-GENE-041008-84]
7. si:ch211-207c6.6 si:ch211-207c6.6 32 1.657 0.838 0.819 - - - - - - -
8. nkx1.2la ENSDARG00000006350 76 1.655 0.865 - - - 0.790 - - - - NK1 transcription factor related 2-like,a [Source:ZFIN;Acc:ZDB-GENE-040615-1]
9. arntl2 ENSDARG00000041381, ENSDARG00000109690, ENSDARG00000116327 56 1.653 - - - 0.920 0.733 - - - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:ZFIN;Acc:ZDB-GENE-000509-2]
10. BX537137.1 ENSDARG00000092436 77 1.65 - 0.775 - 0.875 - - - - - gastrula zinc finger protein XlCGF7.1 [Source:NCBI gene;Acc:100148466]
11. fbxo32 ENSDARG00000040277 93 1.641 - 0.760 - 0.881 - - - - - F-box protein 32 [Source:ZFIN;Acc:ZDB-GENE-040426-1040]
12. nxph2a ENSDARG00000063224 75 1.64 0.864 0.776 - - - - - - - neurexophilin 2a [Source:ZFIN;Acc:ZDB-GENE-060503-124]
13. si:ch211-117c9.5 ENSDARG00000071235 154 1.634 - 0.727 - 0.907 - - - - - si:ch211-117c9.5 [Source:ZFIN;Acc:ZDB-GENE-110408-2]
14. rpl37_1 ENSDARG00000034291, ENSDARG00000076360 365 1.626 0.837 0.789 - - - - - - - ribosomal protein L37 [Source:ZFIN;Acc:ZDB-GENE-040625-39]
15. megf11 ENSDARG00000062686 230 1.626 - 0.728 - 0.898 - - - - - multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
16. si:dkey-287g12.6 ENSDARG00000096808 271 1.606 - 0.802 - - 0.804 - - - - si:dkey-287g12.6 [Source:ZFIN;Acc:ZDB-GENE-130603-36]
17. si:dkey-1p9.5 si:dkey-1p9.5 55 1.584 - - - - 0.835 - 0.749 - -
18. SMIM13_1 SMIM13_1 592 1.58 0.713 0.867 - - - - - - -
19. PEG3_11 PEG3_11 167 1.575 - 0.733 - - - - 0.842 - -
20. si:ch211-255g12.9 si:ch211-255g12.9 78 1.571 - - - 0.858 - - 0.713 - -
21. nmnat1 ENSDARG00000105748 102 1.568 0.741 - - 0.827 - - - - - nicotinamide nucleotide adenylyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-050417-101]
22. s100z ENSDARG00000038729 442 1.565 - 0.849 - - 0.716 - - - - S100 calcium binding protein Z [Source:ZFIN;Acc:ZDB-GENE-050522-69]
23. ano10b ENSDARG00000018159 535 1.562 0.835 0.727 - - - - - - - anoctamin 10b [Source:ZFIN;Acc:ZDB-GENE-061013-169]
24. snip1 ENSDARG00000087528 275 1.555 - 0.724 - 0.831 - - - - - Smad nuclear interacting protein [Source:ZFIN;Acc:ZDB-GENE-041026-3]
25. map4k3a ENSDARG00000087742 771 1.555 0.842 0.713 - - - - - - - mitogen-activated protein kinase kinase kinase kinase 3a [Source:ZFIN;Acc:ZDB-GENE-130329-1]
26. bag4 ENSDARG00000043179 568 1.541 0.787 - - 0.754 - - - - - BCL2 associated athanogene 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5484]
27. inadl 80 1.515 0.771 0.744 - - - - - - - InaD-like (Drosophila), transcript variant X4
28. dhodh ENSDARG00000051889 401 1.495 - 0.731 - 0.764 - - - - - dihydroorotate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030131-3157]
29. C1H7orf26 C1H7orf26 232 1.491 - 0.723 - - - - 0.768 - -
30. casc1 ENSDARG00000016815 99 1.486 - 0.745 - - - 0.741 - - - cancer susceptibility candidate 1 [Source:ZFIN;Acc:ZDB-GENE-041210-153]
31. alg12 ENSDARG00000041199, ENSDARG00000111299 365 1.479 - 0.719 - - - 0.760 - - - ALG12, alpha-1,6-mannosyltransferase [Source:ZFIN;Acc:ZDB-GENE-041210-295]
32. dusp2 ENSDARG00000098108 353 1.451 0.724 0.727 - - - - - - - dual specificity phosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-040801-188]
33. tlk1b ENSDARG00000100715 1153 1.444 - 0.714 - - - - 0.730 - - tousled-like kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4933]
34. arsg ENSDARG00000101715 57 1.438 - 0.723 - - - - 0.715 - - arylsulfatase G [Source:ZFIN;Acc:ZDB-GENE-060503-154]
35. si:ch211-225b11.1 ENSDARG00000002405 172 1.431 - 0.711 - 0.720 - - - - - si:ch211-225b11.1 [Source:ZFIN;Acc:ZDB-GENE-060531-39]
36. strumpellin 212 1.41 - 0.703 - - 0.707 - - - - strumpellin
37. si:ch211-199m9.3 50 0.954 - - - 0.954 - - - - - si:ch211-199m9.3, transcript variant X3
38. tsnax ENSDARG00000115282 99 0.947 - - - 0.947 - - - - - translin-associated factor X [Source:ZFIN;Acc:ZDB-GENE-050913-80]
39. si:ch211-225b11.4 ENSDARG00000093563 42 0.945 - - - 0.945 - - - - - si:ch211-225b11.4 [Source:ZFIN;Acc:ZDB-GENE-060526-114]
40. si:dkey-16p6.1_1 ENSDARG00000088245, ENSDARG00000089179, ENSDARG00000090033, ENSDARG00000090192, ENSDARG00000090734, ENSDARG00000091746, ENSDARG00000098189, ENSDARG00000098515, ENSDARG00000099262, ENSDARG00000100061, ENSDARG00000100164, ENSDARG00000101351, ENSDARG00000101689, ENSDARG00000101828, ENSDARG00000102212, ENSDARG00000104416, ENSDARG00000104897, ENSDARG00000105266, ENSDARG00000111518 37 0.944 - - - 0.944 - - - - - si:dkey-16p6.1 [Source:ZFIN;Acc:ZDB-GENE-081103-43]
41. npdc1 npdc1 221 0.939 - - - 0.939 - - - - -
42. KCNB2 ENSDARG00000088842 35 0.937 - - - 0.937 - - - - - potassium voltage-gated channel subfamily B member 2 [Source:HGNC Symbol;Acc:HGNC:6232]
43. CR790368.1 ENSDARG00000100936 20 0.933 - - - 0.933 - - - - - uncharacterized LOC110440102 [Source:NCBI gene;Acc:110440102]
44. UBXN11 ENSDARG00000053828 22 0.932 - - - 0.932 - - - - - UBX domain protein 11 [Source:ZFIN;Acc:ZDB-GENE-100922-125]
45. amh ENSDARG00000014357 15 0.932 - - - 0.932 - - - - - anti-Mullerian hormone [Source:ZFIN;Acc:ZDB-GENE-050706-192]
46. BX004816.4 BX004816.4 33 0.932 - - - 0.932 - - - - -
47. mei4 ENSDARG00000043912 10 0.931 - - - 0.931 - - - - - meiosis-specific, MEI4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040724-211]
48. zp2.2 ENSDARG00000105346 23 0.93 0.930 - - - - - - - - zona pellucida glycoprotein 2, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-010622-1]
49. sncgb ENSDARG00000109715 1014 0.929 - 0.929 - - - - - - - synuclein, gamma b (breast cancer-specific protein 1) [Source:ZFIN;Acc:ZDB-GENE-050522-235]
50. CIR1 ENSDARG00000099733 66 0.926 - - - 0.926 - - - - - corepressor interacting with RBPJ, 1 [Source:HGNC Symbol;Acc:HGNC:24217]
51. RNF39 RNF39 52 0.925 - - - 0.925 - - - - -
52. SERINC3 SERINC3 21 0.925 - - - 0.925 - - - - -
53. vhll ENSDARG00000078613 87 0.924 - - - - - - 0.924 - - von Hippel-Lindau tumor suppressor like [Source:ZFIN;Acc:ZDB-GENE-081022-78]
54. klhl32 ENSDARG00000003576 99 0.923 - 0.923 - - - - - - - kelch-like family member 32 [Source:ZFIN;Acc:ZDB-GENE-070209-47]
55. camk1db ENSDARG00000017446 47 0.923 - - - 0.923 - - - - - calcium/calmodulin-dependent protein kinase 1Db [Source:ZFIN;Acc:ZDB-GENE-070112-1872]
56. abhd14a ENSDARG00000058367 546 0.921 0.921 - - - - - - - - abhydrolase domain containing 14A [Source:ZFIN;Acc:ZDB-GENE-040426-2428]
57. MUM1L1 MUM1L1 968 0.921 0.921 - - - - - - - -
58. fybb ENSDARG00000044694 136 0.918 - 0.918 - - - - - - - FYN binding protein b [Source:ZFIN;Acc:ZDB-GENE-091204-85]
59. C10H11orf63 C10H11orf63 65 0.918 - 0.918 - - - - - - -
60. ARHGAP42 ARHGAP42 53 0.917 - - - 0.917 - - - - -
61. elf2a ENSDARG00000019459 655 0.916 - - - 0.916 - - - - - E74-like factor 2a (ets domain transcription factor) [Source:ZFIN;Acc:ZDB-GENE-040822-41]
62. CABZ01109624.1 CABZ01109624.1 25 0.916 - - - - - 0.916 - - -
63. si:dkey-17e6.2 si:dkey-17e6.2 72 0.916 - - - 0.916 - - - - -
64. grxcr1 ENSDARG00000069865 22 0.916 - - - 0.916 - - - - - glutaredoxin, cysteine rich 1 [Source:ZFIN;Acc:ZDB-GENE-070424-166]
65. znf438 ENSDARG00000061311 524 0.915 - - - 0.915 - - - - - zinc finger protein 438 [Source:ZFIN;Acc:ZDB-GENE-060929-868]
66. gpr22 gpr22 115 0.914 - - - 0.914 - - - - -
67. Metazoa_SRP_19 Metazoa_SRP_19 17 0.913 - - - 0.913 - - - - -
68. PEX5L PEX5L 179 0.913 - - - 0.913 - - - - -
69. ubxn8 ENSDARG00000098902, ENSDARG00000113836 152 0.912 - - - 0.912 - - - - - UBX domain protein 8 [Source:ZFIN;Acc:ZDB-GENE-050522-266]
70. atp2b1b ENSDARG00000007788 56 0.912 - - - 0.912 - - - - - ATPase plasma membrane Ca2+ transporting 1b [Source:ZFIN;Acc:ZDB-GENE-080409-1]
71. tspan11 ENSDARG00000001781 743 0.912 - 0.912 - - - - - - - tetraspanin 11 [Source:ZFIN;Acc:ZDB-GENE-041210-93]
72. luzp2 ENSDARG00000068247 80 0.912 - - - 0.912 - - - - - leucine zipper protein 2 [Source:ZFIN;Acc:ZDB-GENE-060503-278]
73. parp12a ENSDARG00000042496 82 0.912 - - - 0.912 - - - - - poly (ADP-ribose) polymerase family, member 12a [Source:ZFIN;Acc:ZDB-GENE-050419-6]
74. BX088603.3 ENSDARG00000117713 18 0.908 - - - 0.908 - - - - -
75. krt1-c5 ENSDARG00000026979 325 0.906 - - - 0.906 - - - - - keratin, type 1, gene c5 [Source:ZFIN;Acc:ZDB-GENE-060316-3]
76. CT573393.1 CT573393.1 97 0.904 - - - 0.904 - - - - -
77. CU463790.1 CU463790.1 60 0.902 - - - 0.902 - - - - -
78. TTBK2_1 TTBK2_1 649 0.9 0.900 - - - - - - - -
79. bmp3 ENSDARG00000060526, ENSDARG00000109238 54 0.9 - - - 0.900 - - - - - bone morphogenetic protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7192]
80. VDR VDR 489 0.899 - - - 0.899 - - - - -
81. zgc:172120 ENSDARG00000069199 278 0.898 0.898 - - - - - - - - zgc:172120 [Source:ZFIN;Acc:ZDB-GENE-080204-46]
82. gstcd ENSDARG00000036494 95 0.898 - 0.898 - - - - - - - glutathione S-transferase, C-terminal domain containing [Source:ZFIN;Acc:ZDB-GENE-050320-41]
83. SMARCA4 ENSDARG00000104339 48 0.897 - - - 0.897 - - - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 [Source:HGNC Symbol;Acc:HGNC:11100]
84. si:ch211-238e22.2 ENSDARG00000112450 23 0.896 - 0.896 - - - - - - - si:ch211-238e22.2 [Source:ZFIN;Acc:ZDB-GENE-041210-346]
85. HPS6 265 0.895 - - - 0.895 - - - - - HPS6, biogenesis of lysosomal organelles complex 2 subunit 3
86. coro2ba ENSDARG00000079440 420 0.895 - - - 0.895 - - - - - coronin, actin binding protein, 2Ba [Source:ZFIN;Acc:ZDB-GENE-050518-1]
87. d2hgdh ENSDARG00000060210 362 0.895 - - - 0.895 - - - - - D-2-hydroxyglutarate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-070112-482]
88. ak7b ENSDARG00000017023 25 0.892 - - - 0.892 - - - - - adenylate kinase 7b [Source:ZFIN;Acc:ZDB-GENE-050309-170]
89. CCDC106 CCDC106 1908 0.891 - 0.891 - - - - - - -
90. si:ch211-220f16.2 ENSDARG00000007976 638 0.891 0.891 - - - - - - - - si:ch211-220f16.2 [Source:ZFIN;Acc:ZDB-GENE-070912-199]
91. lef1 ENSDARG00000031894 492 0.89 - - - 0.890 - - - - - lymphoid enhancer-binding factor 1 [Source:ZFIN;Acc:ZDB-GENE-990714-26]
92. slc17a9a ENSDARG00000042954 36 0.889 0.889 - - - - - - - - solute carrier family 17 (vesicular nucleotide transporter), member 9a [Source:ZFIN;Acc:ZDB-GENE-081021-1]
93. ncam1b ENSDARG00000007220 233 0.888 - - - 0.888 - - - - - neural cell adhesion molecule 1b [Source:ZFIN;Acc:ZDB-GENE-010822-2]
94. enthd2 481 0.888 0.888 - - - - - - - - ENTH domain containing 2
95. MAP1S_1 MAP1S_1 1117 0.887 - - - 0.887 - - - - -
96. mthfd2 ENSDARG00000098646, ENSDARG00000112356, ENSDARG00000117060 179 0.886 - - - 0.886 - - - - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:ZFIN;Acc:ZDB-GENE-040704-20]
97. sp7 ENSDARG00000019516 266 0.885 - - - - - - 0.885 - - Sp7 transcription factor [Source:ZFIN;Acc:ZDB-GENE-040629-2]
98. abl2 ENSDARG00000013841 145 0.885 - - - 0.885 - - - - - c-abl oncogene 2, non-receptor tyrosine kinase [Source:ZFIN;Acc:ZDB-GENE-020809-2]
99. nubp2 ENSDARG00000055653 803 0.885 0.885 - - - - - - - - nucleotide binding protein 2 (MinD homolog, E. coli) [Source:ZFIN;Acc:ZDB-GENE-051023-10]
100. secisbp2 ENSDARG00000073892 79 0.884 - - - - - - 0.884 - - SECIS binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050208-263]

There are 858 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA