Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for chd9

Gene Name Gene ID Reads Annotation
chd9 ENSDARG00000074498, ENSDARG00000112964 2603 chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]










Genes with expression patterns similar to chd9

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chd9 ENSDARG00000074498, ENSDARG00000112964 2603 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 9 [Source:ZFIN;Acc:ZDB-GENE-030131-497]
2. GABARAP GABARAP 8341 2.387 - 0.752 - - - 0.824 0.811 - -
3. ppp2r1a ppp2r1a 11291 2.325 - - - - - 0.743 0.765 - 0.817
4. CHD1 ENSDARG00000103787 1645 2.284 - - 0.735 0.799 - - - - 0.750 chromodomain helicase DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7120]
5. rgl1 ENSDARG00000005989, ENSDARG00000114367 2501 2.261 - 0.753 - - - 0.711 - - 0.797 ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
6. srrm1 ENSDARG00000001244 4972 2.227 - 0.752 0.731 - - - 0.744 - - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
7. si:ch211-288g17.3 ENSDARG00000070959 2425 2.158 - 0.724 0.712 - - - - - 0.722 si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
8. nup188 ENSDARG00000030022 2398 1.684 - 0.799 - - - - 0.885 - - nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
9. ubr4 ENSDARG00000009549 5565 1.622 - - - - - 0.832 - - 0.790 ubiquitin protein ligase E3 component n-recognin 4 [Source:ZFIN;Acc:ZDB-GENE-090313-341]
10. snrnp70 ENSDARG00000077126 5921 1.614 - - - - - 0.801 - - 0.813 small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
11. tmem2 2572 1.611 - - - - - 0.824 - - 0.787 transmembrane protein 2, transcript variant X1
12. TNRC6B ENSDARG00000074161 2464 1.597 - - - - - 0.721 - - 0.876 trinucleotide repeat containing 6b [Source:ZFIN;Acc:ZDB-GENE-030131-13]
13. rerea ENSDARG00000077353 4162 1.574 - - - - - - - 0.731 0.843 arginine-glutamic acid dipeptide (RE) repeats a [Source:ZFIN;Acc:ZDB-GENE-060718-1]
14. fam208b ENSDARG00000074168 2244 1.572 - 0.798 - - - - 0.774 - - family with sequence similarity 208, member B [Source:ZFIN;Acc:ZDB-GENE-041111-225]
15. lrig2 ENSDARG00000078561, ENSDARG00000116750 2559 1.571 - 0.831 - - - - - 0.740 - leucine-rich repeats and immunoglobulin-like domains 2 [Source:ZFIN;Acc:ZDB-GENE-041111-75]
16. sdc4 ENSDARG00000059906 10105 1.566 - 0.839 - - - - 0.727 - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
17. srsf1b ENSDARG00000017843 2760 1.564 - 0.802 - - - 0.762 - - - serine/arginine-rich splicing factor 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1467]
18. tra2a ENSDARG00000007863 4449 1.545 - - - - - 0.810 - - 0.735 transformer 2 alpha homolog [Source:ZFIN;Acc:ZDB-GENE-040426-1391]
19. ube2d1a ENSDARG00000029107, ENSDARG00000111656 3658 1.543 - - - - - 0.751 - - 0.792 ubiquitin-conjugating enzyme E2D 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1609]
20. plcg1 ENSDARG00000038442 5324 1.541 - - - - - 0.753 - - 0.788 phospholipase C, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-030421-3]
21. myef2 ENSDARG00000059398 6050 1.524 - - - - - 0.820 0.704 - - myelin expression factor 2 [Source:ZFIN;Acc:ZDB-GENE-051120-114]
22. snrpa1 ENSDARG00000024651 3306 1.518 - - - - - 0.795 0.723 - - small nuclear ribonucleoprotein polypeptide A' [Source:ZFIN;Acc:ZDB-GENE-041114-82]
23. hug 4100 1.515 - - - - - 0.798 - - 0.717 HuG, transcript variant X2
24. Sep-02 Sep-02 10074 1.515 - - - - - 0.712 0.803 - -
25. ubl3b ENSDARG00000021556 1210 1.515 - 0.800 - - - 0.715 - - - ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
26. rpf1 ENSDARG00000005738, ENSDARG00000112347, ENSDARG00000115372 3522 1.514 - - - - - - - 0.711 0.803 ribosome production factor 1 homolog [Source:ZFIN;Acc:ZDB-GENE-040625-177]
27. osbpl9 ENSDARG00000069298 2730 1.514 - 0.724 - - - 0.790 - - - oxysterol binding protein-like 9 [Source:ZFIN;Acc:ZDB-GENE-061110-103]
28. h2afvb ENSDARG00000116491 35692 1.509 - 0.731 - - - 0.778 - - - H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
29. srpk1a ENSDARG00000073997, ENSDARG00000116973 2424 1.505 - 0.798 - - - - 0.707 - - SRSF protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2399]
30. PROSER1 ENSDARG00000086302 1935 1.505 - - 0.701 - - - - - 0.804 proline and serine rich 1 [Source:ZFIN;Acc:ZDB-GENE-111003-1]
31. zmpste24 ENSDARG00000044090, ENSDARG00000115387 3873 1.504 - - - - - 0.796 - 0.708 - zinc metallopeptidase, STE24 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-6312]
32. rimkla ENSDARG00000016830, ENSDARG00000112193 4111 1.5 - 0.759 - - - - - - 0.741 ribosomal modification protein rimK-like family member A [Source:ZFIN;Acc:ZDB-GENE-040912-20]
33. cbx1a ENSDARG00000004189, ENSDARG00000110945 3297 1.5 - - - - - - 0.775 0.725 - chromobox homolog 1a (HP1 beta homolog Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-4945]
34. akirin2 ENSDARG00000058729 13245 1.496 - - - - - 0.761 0.735 - - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
35. lypla2 ENSDARG00000053656 8971 1.496 - - - - - - 0.795 - 0.701 lysophospholipase II [Source:ZFIN;Acc:ZDB-GENE-040426-1715]
36. hnrnpd ENSDARG00000059246, ENSDARG00000109297, ENSDARG00000113453 3440 1.494 - 0.742 - - - - 0.752 - - heterogeneous nuclear ribonucleoprotein D [Source:ZFIN;Acc:ZDB-GENE-070424-97]
37. sdcbp2 ENSDARG00000012513, ENSDARG00000113289, ENSDARG00000115159 6359 1.492 - - - - - 0.732 0.760 - - syndecan binding protein (syntenin) 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3727]
38. ythdc1 ENSDARG00000051953, ENSDARG00000114892 4752 1.49 - - - - - - 0.769 - 0.721 YTH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-114]
39. tmpoa ENSDARG00000007315 3638 1.486 - - - - - 0.749 0.737 - - thymopoietin a [Source:ZFIN;Acc:ZDB-GENE-030131-6003]
40. snrpe ENSDARG00000033175 7462 1.484 - - - - - 0.759 0.725 - - small nuclear ribonucleoprotein polypeptide E [Source:ZFIN;Acc:ZDB-GENE-040426-1112]
41. psmc3 ENSDARG00000007141 5592 1.48 - - - - - - 0.761 - 0.719 proteasome 26S subunit, ATPase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-666]
42. TCEB3 2429 1.479 - 0.725 - - - - - - 0.754 transcription elongation factor B (SIII), polypeptide 3
43. ube2i2 ube2i2 4828 1.478 - - - - - 0.723 0.755 - -
44. ppp1caa ENSDARG00000003486, ENSDARG00000115977 5931 1.474 - - - - - - 0.705 - 0.769 protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
45. sart3 ENSDARG00000008032 2594 1.469 - - 0.736 - - - 0.733 - - squamous cell carcinoma antigen recognized by T cells 3 [Source:ZFIN;Acc:ZDB-GENE-040724-10]
46. cwc22 ENSDARG00000014008 2385 1.469 - 0.748 - - - - - - 0.721 CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]
47. cited4a ENSDARG00000035990 2762 1.467 - 0.729 - - - 0.738 - - - Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a [Source:ZFIN;Acc:ZDB-GENE-030131-7661]
48. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 1.467 - - - - - - 0.755 - 0.712 SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
49. srsf6a ENSDARG00000013729 8576 1.462 - - - - - - 0.759 - 0.703 serine/arginine-rich splicing factor 6a [Source:ZFIN;Acc:ZDB-GENE-040426-2824]
50. ctnna1 ENSDARG00000102441 7984 1.459 - 0.713 - - - 0.746 - - - catenin (cadherin-associated protein), alpha 1 [Source:ZFIN;Acc:ZDB-GENE-991207-24]
51. clta ENSDARG00000045618, ENSDARG00000115484 11767 1.456 - - - - - 0.751 0.705 - - clathrin, light chain A [Source:ZFIN;Acc:ZDB-GENE-040426-1986]
52. polr2a ENSDARG00000099966 5706 1.456 - - 0.737 - - - - 0.719 - polymerase (RNA) II (DNA directed) polypeptide A [Source:ZFIN;Acc:ZDB-GENE-041008-78]
53. fscn1a ENSDARG00000059680 3999 1.456 - - - - - 0.721 - - 0.735 fascin actin-bundling protein 1a [Source:ZFIN;Acc:ZDB-GENE-031009-1]
54. ankzf1 ENSDARG00000041904 917 1.455 0.703 0.752 - - - - - - - ankyrin repeat and zinc finger domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-050309-80]
55. ppp4ca ENSDARG00000070570 8395 1.455 - 0.716 - - - 0.739 - - - protein phosphatase 4, catalytic subunit a [Source:ZFIN;Acc:ZDB-GENE-030131-4433]
56. si:ch73-46j18.5 ENSDARG00000092467 6002 1.452 - 0.745 - - - - - - 0.707 si:ch73-46j18.5 [Source:ZFIN;Acc:ZDB-GENE-030131-7892]
57. khsrp ENSDARG00000026489 15738 1.449 - - - - - 0.742 0.707 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
58. rbmx ENSDARG00000014244 3445 1.449 - - - - - 0.702 0.747 - - RNA binding motif protein X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-579]
59. apmap ENSDARG00000017422 2692 1.449 - - - - - 0.716 - - 0.733 adipocyte plasma membrane associated protein [Source:ZFIN;Acc:ZDB-GENE-020919-1]
60. EIF1B ENSDARG00000029445 5034 1.446 - - - - - - 0.739 - 0.707 eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
61. C10H11orf30 C10H11orf30 1982 1.439 - - - - - - 0.722 0.717 -
62. RNF38 ENSDARG00000062055 3901 1.436 - - 0.716 - - 0.720 - - - ring finger protein 38 [Source:ZFIN;Acc:ZDB-GENE-030131-8693]
63. sumo3a ENSDARG00000028119 13447 1.436 - - - - - 0.726 0.710 - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
64. patl1 ENSDARG00000017423 2744 1.433 - - - - - - 0.730 0.703 - protein associated with topoisomerase II homolog 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-070209-83]
65. arhgef7b ENSDARG00000073848 1249 1.433 - 0.703 - - - - 0.730 - - Rho guanine nucleotide exchange factor (GEF) 7b [Source:ZFIN;Acc:ZDB-GENE-041212-49]
66. sin3b ENSDARG00000062472 2025 1.427 - - 0.721 - - - 0.706 - - SIN3 transcription regulator family member B [Source:ZFIN;Acc:ZDB-GENE-030131-8264]
67. rnf2 ENSDARG00000010381 3427 1.427 - - - - - 0.702 0.725 - - ring finger protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5243]
68. FBXL3 FBXL3 1769 1.424 - - - - - - 0.720 - 0.704
69. ctnnb1 ENSDARG00000014571 12004 1.419 - - 0.703 - - 0.716 - - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
70. cdc34b ENSDARG00000012627 3879 1.418 - 0.707 - - - - - - 0.711 cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
71. hnrnpr ENSDARG00000014569 3423 1.416 - - - - - - 0.705 0.711 - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
72. trib3 ENSDARG00000016200 1231 1.413 - 0.702 - - - - - 0.711 - tribbles pseudokinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2609]
73. wsb1 ENSDARG00000021343 3828 1.411 - 0.705 - - - - - 0.706 - WD repeat and SOCS box containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1946]
74. sh3pxd2b ENSDARG00000103251 1469 1.41 - 0.707 - - - 0.703 - - - SH3 and PX domains 2B [Source:ZFIN;Acc:ZDB-GENE-060810-52]
75. adam28 ENSDARG00000035514, ENSDARG00000109685, ENSDARG00000111244 540 0.908 - 0.908 - - - - - - - ADAM metallopeptidase domain 28 [Source:ZFIN;Acc:ZDB-GENE-060929-532]
76. cwf19l2 ENSDARG00000091760 1372 0.896 - 0.896 - - - - - - - CWF19-like 2, cell cycle control (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050913-1]
77. prkca ENSDARG00000039241, ENSDARG00000115657 2136 0.887 - 0.887 - - - - - - - protein kinase C, alpha [Source:ZFIN;Acc:ZDB-GENE-050208-100]
78. tbcb ENSDARG00000068404, ENSDARG00000109716 5098 0.886 - - - - - 0.886 - - - tubulin folding cofactor B [Source:ZFIN;Acc:ZDB-GENE-030131-9296]
79. hs3st3b1b ENSDARG00000086645, ENSDARG00000113233 1194 0.879 - 0.879 - - - - - - - heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1b [Source:ZFIN;Acc:ZDB-GENE-070202-5]
80. ston2 ENSDARG00000057452 2977 0.879 - 0.879 - - - - - - - stonin 2 [Source:ZFIN;Acc:ZDB-GENE-050913-137]
81. AL929022.2 AL929022.2 567 0.879 - 0.879 - - - - - - -
82. gadd45ab ENSDARG00000104571, ENSDARG00000110532 770 0.879 - 0.879 - - - - - - - growth arrest and DNA-damage-inducible, alpha, b [Source:ZFIN;Acc:ZDB-GENE-040704-60]
83. ef1 1343 0.878 - 0.878 - - - - - - - E74-like factor 1 (ets domain transcription factor), transcript variant X4
84. ZNF618 ENSDARG00000071469 2347 0.875 - 0.875 - - - - - - - zinc finger protein 618 [Source:ZFIN;Acc:ZDB-GENE-030131-2063]
85. hnrnpa0b ENSDARG00000036162, ENSDARG00000112653 27740 0.872 - - - - - 0.872 - - - heterogeneous nuclear ribonucleoprotein A0b [Source:ZFIN;Acc:ZDB-GENE-030131-6154]
86. mxra5a ENSDARG00000074815 628 0.868 - 0.868 - - - - - - - matrix-remodelling associated 5a [Source:ZFIN;Acc:ZDB-GENE-090312-22]
87. foxp2 ENSDARG00000005453 1504 0.865 - 0.865 - - - - - - - forkhead box P2 [Source:ZFIN;Acc:ZDB-GENE-041203-2]
88. tnk1 ENSDARG00000069433 639 0.864 - 0.864 - - - - - - - tyrosine kinase, non-receptor, 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7427]
89. tbp ENSDARG00000014994 1591 0.86 - 0.860 - - - - - - - TATA box binding protein [Source:ZFIN;Acc:ZDB-GENE-030616-563]
90. snrpf ENSDARG00000105037 10241 0.86 - - - - - 0.860 - - - small nuclear ribonucleoprotein polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040930-9]
91. chl1a ENSDARG00000077881 1488 0.855 - 0.855 - - - - - - - cell adhesion molecule L1-like a [Source:ZFIN;Acc:ZDB-GENE-090313-201]
92. PLEKHA6 ENSDARG00000020328 2076 0.854 - 0.854 - - - - - - - pleckstrin homology domain containing, family A member 6 [Source:ZFIN;Acc:ZDB-GENE-140106-14]
93. dennd4a ENSDARG00000062721, ENSDARG00000112721 774 0.851 - 0.851 - - - - - - - DENN/MADD domain containing 4A [Source:ZFIN;Acc:ZDB-GENE-060503-285]
94. ddx39aa ENSDARG00000006225, ENSDARG00000116665 6675 0.849 - - - - - - - - 0.849 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Source:ZFIN;Acc:ZDB-GENE-030131-4275]
95. CKAP2L ENSDARG00000100573 1136 0.842 - 0.842 - - - - - - - cytoskeleton associated protein 2-like [Source:ZFIN;Acc:ZDB-GENE-030131-6690]
96. abhd17c ENSDARG00000058452, ENSDARG00000111161 1698 0.841 - 0.841 - - - - - - - abhydrolase domain containing 17C [Source:ZFIN;Acc:ZDB-GENE-040426-714]
97. vox ENSDARG00000099761 801 0.84 - 0.840 - - - - - - - ventral homeobox [Source:ZFIN;Acc:ZDB-GENE-010108-1]
98. exosc1 ENSDARG00000059841 6895 0.84 - 0.840 - - - - - - - exosome component 1 [Source:ZFIN;Acc:ZDB-GENE-080926-3]
99. morc2 ENSDARG00000028539 3259 0.84 - - - - - - - - 0.840 MORC family CW-type zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-040822-40]
100. igf2bp2a ENSDARG00000003421 2810 0.84 - 0.840 - - - - - - - insulin-like growth factor 2 mRNA binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-070912-44]

There are 879 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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