Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for chd8

Gene Name Gene ID Reads Annotation
chd8 ENSDARG00000075543, ENSDARG00000111419 663 chromodomain helicase DNA binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-030131-6320]










Genes with expression patterns similar to chd8

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chd8 ENSDARG00000075543, ENSDARG00000111419 663 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-030131-6320]
2. creg1 ENSDARG00000105154 843 2.277 - - 0.776 0.765 - 0.736 - - - cellular repressor of E1A-stimulated genes 1 [Source:ZFIN;Acc:ZDB-GENE-070112-2042]
3. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 1.675 - 0.891 - - - - 0.784 - - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
4. clec16a ENSDARG00000038094 501 1.663 - 0.839 - 0.824 - - - - - C-type lectin domain containing 16A [Source:ZFIN;Acc:ZDB-GENE-040426-951]
5. nudt17 ENSDARG00000008014 479 1.628 0.845 0.783 - - - - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 17 [Source:ZFIN;Acc:ZDB-GENE-050913-50]
6. C17H15orf52 244 1.604 - - - 0.856 - - 0.748 - - chromosome 17 C15orf52 homolog, transcript variant X3
7. zgc:113443 359 1.59 - - 0.836 - - 0.754 - - - zgc:113443, transcript variant X3
8. sde2 ENSDARG00000024124, ENSDARG00000109881 2342 1.588 - - - - - 0.871 - - 0.717 SDE2 telomere maintenance homolog (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-050417-270]
9. si:ch211-181d7.3 ENSDARG00000068621 87 1.587 - 0.797 0.790 - - - - - - si:ch211-181d7.3 [Source:ZFIN;Acc:ZDB-GENE-121214-30]
10. mak ENSDARG00000059287 144 1.584 - 0.807 - - - - 0.777 - - male germ cell-associated kinase [Source:ZFIN;Acc:ZDB-GENE-030131-7279]
11. gpr173 ENSDARG00000042922 238 1.583 - 0.783 0.800 - - - - - - G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]
12. si:dkeyp-7b3.1 si:dkeyp-7b3.1 615 1.56 - 0.835 - 0.725 - - - - -
13. mta3 ENSDARG00000054903, ENSDARG00000113436 353 1.555 - 0.800 0.755 - - - - - - metastasis associated 1 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6485]
14. med13a ENSDARG00000053884, ENSDARG00000112778 931 1.553 - 0.708 0.845 - - - - - - mediator complex subunit 13a [Source:ZFIN;Acc:ZDB-GENE-070627-13]
15. fam173b ENSDARG00000033451 513 1.539 - 0.792 0.747 - - - - - - family with sequence similarity 173, member B [Source:ZFIN;Acc:ZDB-GENE-041114-90]
16. mcl1a ENSDARG00000009779 2058 1.538 - 0.821 - - - - - - 0.717 MCL1, BCL2 family apoptosis regulator a [Source:ZFIN;Acc:ZDB-GENE-000511-7]
17. si:ch211-241n15.2 si:ch211-241n15.2 435 1.535 - - 0.703 0.832 - - - - -
18. sdcbp ENSDARG00000030097 196 1.533 - - 0.743 - - - 0.790 - - syndecan binding protein (syntenin) [Source:ZFIN;Acc:ZDB-GENE-081104-57]
19. uso1 ENSDARG00000019581 479 1.531 - 0.784 - 0.747 - - - - - USO1 vesicle transport factor [Source:ZFIN;Acc:ZDB-GENE-040426-688]
20. si:dkey-66i24.9 ENSDARG00000096689 796 1.53 - - - 0.824 - - 0.706 - - si:dkey-66i24.9 [Source:ZFIN;Acc:ZDB-GENE-130531-63]
21. btbd9 ENSDARG00000068983 356 1.529 - 0.821 - - - - 0.708 - - BTB (POZ) domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040704-39]
22. hnrnpr ENSDARG00000014569 3423 1.526 - - - 0.709 - - 0.817 - - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
23. mff ENSDARG00000053753 905 1.519 - - - 0.801 - 0.718 - - - mitochondrial fission factor [Source:ZFIN;Acc:ZDB-GENE-040426-1510]
24. C21H5orf24 C21H5orf24 333 1.509 - - 0.803 - - - 0.706 - -
25. si:ch211-79l20.4 1305 1.508 - 0.778 - 0.730 - - - - - si:ch211-79l20.4, transcript variant X3
26. CACFD1 ENSDARG00000090818 1298 1.505 - 0.744 - - - - 0.761 - - calcium channel flower domain containing 1 [Source:HGNC Symbol;Acc:HGNC:1365]
27. pias4a ENSDARG00000007081 4264 1.504 - 0.796 - 0.708 - - - - - protein inhibitor of activated STAT, 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2734]
28. CU856539.1 ENSDARG00000010023 190 1.503 - - 0.793 - - - 0.710 - - hippocampus abundant transcript 1 protein-like [Source:NCBI gene;Acc:557306]
29. BX248510.1 ENSDARG00000075422 1449 1.502 - 0.777 - 0.725 - - - - - mitochondrial ribosomal protein L49 [Source:NCBI gene;Acc:558658]
30. CR293532.1 ENSDARG00000115628 204 1.5 - - - 0.779 - - 0.721 - -
31. calcoco1 calcoco1 1060 1.495 - 0.741 - 0.754 - - - - -
32. ZBTB41 ENSDARG00000054984 464 1.487 - - - - - - 0.751 - 0.736 zinc finger and BTB domain containing 41 [Source:ZFIN;Acc:ZDB-GENE-130530-649]
33. sub1b ENSDARG00000007720, ENSDARG00000112010 2258 1.484 - - - 0.759 - - 0.725 - - SUB1 homolog, transcriptional regulator b [Source:ZFIN;Acc:ZDB-GENE-040718-209]
34. YEATS2 ENSDARG00000078767, ENSDARG00000097253 854 1.477 - - - 0.755 - - 0.722 - - YEATS domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-081104-292]
35. rnf141 ENSDARG00000041802, ENSDARG00000113109 531 1.463 - - 0.718 0.745 - - - - - ring finger protein 141 [Source:ZFIN;Acc:ZDB-GENE-040625-71]
36. ilvbl ENSDARG00000017126 356 1.457 - 0.732 0.725 - - - - - - ilvB (bacterial acetolactate synthase)-like [Source:ZFIN;Acc:ZDB-GENE-040426-1623]
37. larp1 ENSDARG00000101722 976 1.435 - - 0.701 - - - 0.734 - - La ribonucleoprotein domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5386]
38. polr2f ENSDARG00000036625, ENSDARG00000110198 1330 1.432 - - - 0.730 - - - 0.702 - polymerase (RNA) II (DNA directed) polypeptide F [Source:ZFIN;Acc:ZDB-GENE-040718-279]
39. mfap1 ENSDARG00000018241 833 1.428 - 0.722 0.706 - - - - - - microfibril associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1075]
40. BX649554.3 BX649554.3 949 1.421 - - - 0.714 - - 0.707 - -
41. zgc:77415 zgc:77415 383 0.953 - - - - - - 0.953 - -
42. nhp2l1a nhp2l1a 993 0.944 - 0.944 - - - - - - -
43. rasal2 ENSDARG00000036257 3223 0.925 - - - 0.925 - - - - - RAS protein activator like 2 [Source:ZFIN;Acc:ZDB-GENE-070912-180]
44. CU570976.1 ENSDARG00000097183 341 0.911 - - - - - - 0.911 - -
45. MIIP ENSDARG00000088346 382 0.909 - 0.909 - - - - - - - migration and invasion inhibitory protein [Source:ZFIN;Acc:ZDB-GENE-130620-1]
46. mtss1 ENSDARG00000059604 837 0.901 - 0.901 - - - - - - - metastasis suppressor 1 [Source:ZFIN;Acc:ZDB-GENE-081105-141]
47. arhgap12b ENSDARG00000026482, ENSDARG00000109973 1142 0.896 - 0.896 - - - - - - - Rho GTPase activating protein 12b [Source:ZFIN;Acc:ZDB-GENE-040426-1727]
48. TRIM14_7 TRIM14_7 381 0.893 - 0.893 - - - - - - -
49. znf207a ENSDARG00000015538 2630 0.892 - 0.892 - - - - - - - zinc finger protein 207, a [Source:ZFIN;Acc:ZDB-GENE-040426-2273]
50. srfbp1 ENSDARG00000075323 2262 0.89 - 0.890 - - - - - - - serum response factor binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1991]
51. exosc7 ENSDARG00000100060 190 0.886 - - - 0.886 - - - - - exosome component 7 [Source:ZFIN;Acc:ZDB-GENE-050417-47]
52. sorbs1 ENSDARG00000103435 2297 0.885 - - - 0.885 - - - - - sorbin and SH3 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090313-168]
53. si:dkey-61l1.4 ENSDARG00000092567 1012 0.882 - 0.882 - - - - - - - si:dkey-61l1.4 [Source:ZFIN;Acc:ZDB-GENE-070705-483]
54. usp37 ENSDARG00000040990 637 0.882 - - - 0.882 - - - - - ubiquitin specific peptidase 37 [Source:ZFIN;Acc:ZDB-GENE-061013-802]
55. znf395_1 znf395_1 342 0.881 - 0.881 - - - - - - -
56. fam198b ENSDARG00000077054 98 0.881 - - - 0.881 - - - - - family with sequence similarity 198, member B [Source:ZFIN;Acc:ZDB-GENE-100105-1]
57. ZNF337_2 ZNF337_2 260 0.878 - - - 0.878 - - - - -
58. THEM6_1 ENSDARG00000103914 469 0.877 - 0.877 - - - - - - - thioesterase superfamily member 6 [Source:HGNC Symbol;Acc:HGNC:29656]
59. si:ch211-214e3.5 ENSDARG00000074270 755 0.876 - 0.876 - - - - - - - si:ch211-214e3.5 [Source:ZFIN;Acc:ZDB-GENE-050208-19]
60. nupl1 nupl1 1100 0.876 - 0.876 - - - - - - -
61. ccdc82 ENSDARG00000014966 563 0.876 - - - 0.876 - - - - - coiled-coil domain containing 82 [Source:ZFIN;Acc:ZDB-GENE-030131-5749]
62. skilb ENSDARG00000022904 300 0.875 - - - 0.875 - - - - - SKI-like proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-080723-40]
63. wu:fc32g12 wu:fc32g12 198 0.875 - 0.875 - - - - - - -
64. TTYH1 ENSDARG00000076804 399 0.874 - - - 0.874 - - - - - tweety family member 1 [Source:ZFIN;Acc:ZDB-GENE-100922-257]
65. smad3b ENSDARG00000010207 951 0.874 - - - 0.874 - - - - - SMAD family member 3b [Source:ZFIN;Acc:ZDB-GENE-030128-4]
66. ftr67 ENSDARG00000098820 611 0.874 - - - 0.874 - - - - - finTRIM family, member 67 [Source:ZFIN;Acc:ZDB-GENE-060312-27]
67. lhfpl4a ENSDARG00000111810 206 0.873 - - - 0.873 - - - - - lipoma HMGIC fusion partner-like 4a [Source:ZFIN;Acc:ZDB-GENE-111017-1]
68. rad9a ENSDARG00000056984, ENSDARG00000115514 152 0.872 - - - 0.872 - - - - - RAD9 checkpoint clamp component A [Source:ZFIN;Acc:ZDB-GENE-040426-935]
69. VASH1 ENSDARG00000092716 33 0.872 - - - 0.872 - - - - - vasohibin 1 [Source:HGNC Symbol;Acc:HGNC:19964]
70. cops4 ENSDARG00000043732 1508 0.872 - 0.872 - - - - - - - COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis) [Source:ZFIN;Acc:ZDB-GENE-030131-4317]
71. zgc:92242 ENSDARG00000029443 367 0.872 - - - 0.872 - - - - - zgc:92242 [Source:ZFIN;Acc:ZDB-GENE-040718-371]
72. sfrp5 ENSDARG00000039041 1777 0.871 - 0.871 - - - - - - - secreted frizzled-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-011108-2]
73. abcb8 ENSDARG00000056672 589 0.87 - 0.870 - - - - - - - ATP-binding cassette, sub-family B (MDR/TAP), member 8 [Source:ZFIN;Acc:ZDB-GENE-050410-6]
74. kat6a ENSDARG00000018907 250 0.87 - 0.870 - - - - - - - K(lysine) acetyltransferase 6A [Source:ZFIN;Acc:ZDB-GENE-021022-3]
75. dot1l ENSDARG00000061992 602 0.868 - - - 0.868 - - - - - DOT1-like histone H3K79 methyltransferase [Source:ZFIN;Acc:ZDB-GENE-060503-341]
76. aff3 ENSDARG00000079575 578 0.868 - 0.868 - - - - - - - AF4/FMR2 family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030219-193]
77. CACNG4 CACNG4 123 0.868 - - - 0.868 - - - - -
78. btbd7 ENSDARG00000003069 609 0.867 - 0.867 - - - - - - - BTB (POZ) domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-4477]
79. pak4 ENSDARG00000018110 1962 0.867 - - - 0.867 - - - - - p21 protein (Cdc42/Rac)-activated kinase 4 [Source:ZFIN;Acc:ZDB-GENE-040704-69]
80. LRIG3 ENSDARG00000079363 909 0.867 - - - 0.867 - - - - - leucine-rich repeats and immunoglobulin-like domains 3 [Source:ZFIN;Acc:ZDB-GENE-130530-866]
81. armc9 ENSDARG00000087299 459 0.866 - - - 0.866 - - - - - armadillo repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-100922-67]
82. mertk mertk 1232 0.865 - 0.865 - - - - - - -
83. SNORD27 SNORD27 181 0.865 - - - 0.865 - - - - -
84. si:dkey-151m22.8 ENSDARG00000095934 41 0.865 - - - 0.865 - - - - - si:dkey-151m22.8 [Source:ZFIN;Acc:ZDB-GENE-110411-250]
85. bdnf ENSDARG00000018817 193 0.864 - - - 0.864 - - - - - brain-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-000412-1]
86. RLTPR 1158 0.863 - - - - - - 0.863 - - RGD motif, leucine rich repeats, tropomodulin domain and proline-rich containing, transcript variant X1
87. ntf7 ntf7 72 0.863 - - - 0.863 - - - - -
88. zgc:86896 ENSDARG00000090369 839 0.863 - 0.863 - - - - - - - zgc:86896 [Source:ZFIN;Acc:ZDB-GENE-040625-80]
89. cables1 ENSDARG00000099395 361 0.863 - 0.863 - - - - - - - Cdk5 and Abl enzyme substrate 1 [Source:ZFIN;Acc:ZDB-GENE-070912-509]
90. CU928220.2 CU928220.2 537 0.863 - 0.863 - - - - - - -
91. xrcc5_1 ENSDARG00000099298 1533 0.862 - 0.862 - - - - - - - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
92. slc34a1a ENSDARG00000028824 35 0.862 - - - 0.862 - - - - - solute carrier family 34 (type II sodium/phosphate cotransporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-101006-3]
93. mecr ENSDARG00000032326 314 0.862 - - - 0.862 - - - - - mitochondrial trans-2-enoyl-CoA reductase [Source:ZFIN;Acc:ZDB-GENE-050417-399]
94. dnajb1b ENSDARG00000041394 25 0.862 - - - 0.862 - - - - - DnaJ (Hsp40) homolog, subfamily B, member 1b [Source:ZFIN;Acc:ZDB-GENE-030131-5455]
95. usp10 ENSDARG00000103422 4247 0.861 - 0.861 - - - - - - - ubiquitin specific peptidase 10 [Source:ZFIN;Acc:ZDB-GENE-030219-132]
96. magi1a ENSDARG00000070145 547 0.861 - - - 0.861 - - - - - membrane associated guanylate kinase, WW and PDZ domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-081105-13]
97. POLR2H ENSDARG00000038505 2031 0.861 - 0.861 - - - - - - - info polymerase (RNA) II (DNA directed) polypeptide H [Source:ZFIN;Acc:ZDB-GENE-050417-66]
98. IL17RA_1 IL17RA_1 39 0.861 - - - 0.861 - - - - -
99. zgc:173480 171 0.86 - - - 0.860 - - - - - zgc:173480
100. rnf11b ENSDARG00000040635 242 0.86 - - - 0.860 - - - - - ring finger protein 11b [Source:ZFIN;Acc:ZDB-GENE-050913-69]

There are 1138 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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