Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for chd7

Gene Name Gene ID Reads Annotation
chd7 ENSDARG00000075211 12085 chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]










Genes with expression patterns similar to chd7

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chd7 ENSDARG00000075211 12085 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
2. ssbp4 ENSDARG00000056483 10196 3.251 - - - 0.850 - 0.874 0.791 0.736 - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
3. nova2 ENSDARG00000017673 7685 3.173 0.808 - - 0.716 - 0.751 0.898 - - neuro-oncological ventral antigen 2 [Source:ZFIN;Acc:ZDB-GENE-080211-1]
4. h2afva ENSDARG00000068820 16427 3.143 - 0.738 - 0.742 - 0.875 0.788 - - H2A histone family, member Va [Source:ZFIN;Acc:ZDB-GENE-020717-1]
5. hmgb3a ENSDARG00000056725 15668 3.094 0.792 - - - 0.705 0.716 0.881 - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
6. uba1 ENSDARG00000037559 11579 3.068 - - 0.716 - 0.789 0.753 0.810 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
7. skib ENSDARG00000008034 6518 2.641 - - - - - 0.780 0.875 - 0.986 v-ski avian sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-990715-10]
8. ZFHX3 ENSDARG00000103057 7759 2.633 - - - - - - 0.918 0.737 0.978 zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
9. GJD2_1 GJD2_1 3045 2.627 - - - - - 0.771 0.859 - 0.997
10. chd4a ENSDARG00000063535, ENSDARG00000111791 4059 2.568 - - - 0.838 - 0.811 0.919 - - chromodomain helicase DNA binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-041111-187]
11. CABZ01111990.1 CABZ01111990.1 4374 2.506 0.808 - - - - 0.755 0.943 - -
12. nrarpb ENSDARG00000018958 6225 2.486 0.755 - - 0.804 - - 0.927 - - NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
13. hoxa9b ENSDARG00000056819 3081 2.476 0.749 - - - - 0.796 0.931 - - homeobox A9b [Source:ZFIN;Acc:ZDB-GENE-000823-2]
14. AGO1 ENSDARG00000092644 4521 2.47 0.778 - - - - 0.787 0.905 - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
15. pou3f3a ENSDARG00000042032 2835 2.468 0.731 - - - - 0.814 0.923 - - POU class 3 homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-980526-220]
16. tmeff1b ENSDARG00000056740 11253 2.463 - 0.835 - - - 0.715 0.913 - - transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
17. dla ENSDARG00000010791 9281 2.452 0.783 - 0.760 - - - 0.909 - - deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
18. pcdh19 ENSDARG00000034344 2378 2.442 - - - 0.816 - 0.836 0.790 - - protocadherin 19 [Source:ZFIN;Acc:ZDB-GENE-030131-4218]
19. her2 ENSDARG00000038205 3219 2.44 0.796 - - - - 0.728 0.916 - - hairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
20. neurog1 ENSDARG00000056130 3924 2.435 0.740 - - - - 0.787 0.908 - - neurogenin 1 [Source:ZFIN;Acc:ZDB-GENE-990415-174]
21. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 2.43 0.747 - - - - 0.760 0.923 - - N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
22. zmiz1a ENSDARG00000074502 3920 2.427 - - - - 0.789 0.813 0.825 - - zinc finger, MIZ-type containing 1a [Source:ZFIN;Acc:ZDB-GENE-080220-27]
23. EFCC1 ENSDARG00000077826 1359 2.424 0.746 - - - - 0.789 0.889 - - EF-hand and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-120813-3]
24. sox2 ENSDARG00000070913 2763 2.424 0.780 - - 0.791 - - 0.853 - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
25. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 2.416 0.741 - - 0.747 - - 0.928 - - cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
26. grin1a ENSDARG00000027828 1327 2.416 0.736 - - - - 0.754 0.926 - - glutamate receptor, ionotropic, N-methyl D-aspartate 1a [Source:ZFIN;Acc:ZDB-GENE-051202-1]
27. clstn1 ENSDARG00000031720 5286 2.41 0.710 - - - - 0.812 0.888 - - calsyntenin 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1064]
28. znf865 ENSDARG00000036698 15532 2.409 - - - 0.740 - 0.828 0.841 - - zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
29. tmie ENSDARG00000069423 305 2.409 0.794 - - - - 0.723 0.892 - - transmembrane inner ear [Source:ZFIN;Acc:ZDB-GENE-061207-9]
30. ctnnd2b ENSDARG00000003779 964 2.408 0.762 - - - - 0.762 0.884 - - catenin (cadherin-associated protein), delta 2b [Source:ZFIN;Acc:ZDB-GENE-070912-532]
31. wu:fq41a10 wu:fq41a10 7009 2.405 - - 0.711 0.767 - - 0.927 - -
32. clstn3 ENSDARG00000073883 590 2.405 0.731 - - - - 0.758 0.916 - - calsyntenin 3 [Source:ZFIN;Acc:ZDB-GENE-100921-73]
33. CR936437.1 CR936437.1 6465 2.401 - 0.801 - 0.861 - - 0.739 - -
34. whsc1l1 8544 2.401 - - 0.763 - - 0.832 0.806 - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
35. slc8a2b ENSDARG00000100592 598 2.4 0.719 - - - - 0.753 0.928 - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
36. nes ENSDARG00000088805 2710 2.396 0.786 - - - - 0.744 0.866 - - nestin [Source:ZFIN;Acc:ZDB-GENE-071119-2]
37. mbd3b ENSDARG00000042029, ENSDARG00000061810 4561 2.393 0.819 - - - 0.704 - 0.870 - - methyl-CpG binding domain protein 3b [Source:ZFIN;Acc:ZDB-GENE-030131-9792]
38. nbeaa ENSDARG00000070080 862 2.388 0.772 - - 0.704 - - 0.912 - - neurobeachin a [Source:ZFIN;Acc:ZDB-GENE-050320-68]
39. EPB41L1 EPB41L1 1896 2.382 0.720 - - - - 0.744 0.918 - -
40. slc35g2b ENSDARG00000045447 378 2.379 0.770 - - - - 0.762 0.847 - - solute carrier family 35, member G2b [Source:ZFIN;Acc:ZDB-GENE-050320-142]
41. dpysl3 ENSDARG00000002587 4381 2.377 0.722 - - - - 0.717 0.938 - - dihydropyrimidinase-like 3 [Source:ZFIN;Acc:ZDB-GENE-050720-2]
42. ank2b ENSDARG00000043313 3065 2.368 0.711 - - - - 0.832 0.825 - - ankyrin 2b, neuronal [Source:ZFIN;Acc:ZDB-GENE-041010-165]
43. onecut1 ENSDARG00000007982, ENSDARG00000112251 6307 2.367 0.739 - - - - 0.723 0.905 - - one cut homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1469]
44. tmem35 ENSDARG00000052567 5685 2.363 0.727 - - - - 0.748 0.888 - - transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
45. tubb5 ENSDARG00000037997 18691 2.359 0.736 - 0.733 - - - 0.890 - - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
46. CHL1 CHL1 1553 2.355 0.760 - - - - 0.711 0.884 - -
47. irx1b ENSDARG00000056594 2224 2.354 0.754 - - - - 0.708 0.892 - - iroquois homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-010716-1]
48. tmem59l ENSDARG00000003655 1536 2.352 0.737 - - - - 0.750 0.865 - - transmembrane protein 59-like [Source:ZFIN;Acc:ZDB-GENE-040426-2651]
49. wasf3 wasf3 3287 2.347 0.752 - - - - 0.774 0.821 - -
50. smarce1 ENSDARG00000016871 9628 2.344 0.759 - - - - 0.785 0.800 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-967]
51. UBE2QL1 ENSDARG00000079276 3474 2.343 0.726 - - - - 0.726 0.891 - - ubiquitin-conjugating enzyme E2Q family-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8137]
52. zgc:174906 ENSDARG00000075314 2187 2.341 - - - 0.736 - 0.702 0.903 - - zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
53. C8H1orf106 C8H1orf106 2690 2.338 0.714 - - - - 0.800 0.824 - -
54. fam60al 2846 2.338 0.728 - - 0.762 - - 0.848 - - family with sequence similarity 60, member A, like
55. hoxa5a ENSDARG00000102501 1667 2.336 0.729 - - - - 0.742 0.865 - - homeobox A5a [Source:ZFIN;Acc:ZDB-GENE-000823-9]
56. STMN3 ENSDARG00000038465 1009 2.33 0.703 - - - - 0.705 0.922 - - stathmin-like 3 [Source:ZFIN;Acc:ZDB-GENE-081124-2]
57. gng3 ENSDARG00000009553 2530 2.324 0.713 - - - - 0.703 0.908 - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
58. rufy3 ENSDARG00000029692 3031 2.321 0.779 - - - - 0.722 0.820 - - RUN and FYVE domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050327-58]
59. pou3f2a ENSDARG00000070220 817 2.314 - - - 0.720 - 0.738 0.856 - - POU class 3 homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-980526-139]
60. igdcc3 ENSDARG00000075158 1921 2.305 - - - 0.766 - 0.767 0.772 - - immunoglobulin superfamily, DCC subclass, member 3 [Source:ZFIN;Acc:ZDB-GENE-080303-24]
61. s1pr1 ENSDARG00000042690, ENSDARG00000113842, ENSDARG00000116038 2510 2.304 0.740 - - - - 0.725 0.839 - - sphingosine-1-phosphate receptor 1 [Source:ZFIN;Acc:ZDB-GENE-001228-2]
62. foxk2 ENSDARG00000030583 2982 2.3 - - - - - 0.726 0.858 0.716 - forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
63. nr2f2 ENSDARG00000040926 5213 2.292 0.717 - - - - 0.813 0.762 - - nuclear receptor subfamily 2, group F, member 2 [Source:ZFIN;Acc:ZDB-GENE-990415-252]
64. hnrnpr ENSDARG00000014569 3423 2.292 - - - - 0.720 0.722 0.850 - - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
65. CABZ01028287.1 CABZ01028287.1 626 2.285 0.730 - - - - 0.789 0.766 - -
66. wu:fb17g07 wu:fb17g07 10567 2.273 0.721 - - - - 0.756 0.796 - -
67. sept5a ENSDARG00000013843 1206 2.263 0.713 - - - - 0.729 0.821 - - septin 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7868]
68. negr1 ENSDARG00000021607 1051 2.263 0.710 - - 0.729 - - 0.824 - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
69. vim ENSDARG00000010008 3551 2.258 0.779 - - - - 0.706 0.773 - - vimentin [Source:ZFIN;Acc:ZDB-GENE-011212-3]
70. mcm7 ENSDARG00000101180 12417 2.255 0.746 - - 0.740 - - 0.769 - - minichromosome maintenance complex component 7 [Source:ZFIN;Acc:ZDB-GENE-020419-27]
71. vdac1 ENSDARG00000045132 8051 2.248 0.782 - - - - 0.738 0.728 - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
72. BAZ2B BAZ2B 3285 2.247 - - - 0.748 - 0.790 0.709 - -
73. SYT2 ENSDARG00000014169 265 2.236 0.713 - - - - 0.809 0.714 - - synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
74. ntn1a ENSDARG00000105112, ENSDARG00000111684 2553 2.232 - - - - - 0.766 0.764 0.702 - netrin 1a [Source:ZFIN;Acc:ZDB-GENE-990415-169]
75. fabp7a ENSDARG00000007697 5211 2.221 - - - - 0.733 0.772 0.716 - - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
76. khsrp ENSDARG00000026489 15738 2.211 0.700 - 0.750 - - - 0.761 - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
77. si:ch73-21k16.6 si:ch73-21k16.6 4896 2.207 0.796 - - - - 0.703 0.708 - -
78. TNRC6C_1 TNRC6C_1 6574 2.206 - - - 0.767 - 0.730 - 0.709 -
79. FP245444.1 FP245444.1 1922 2.205 - - - 0.773 - 0.723 - 0.709 -
80. snrpc ENSDARG00000009871 9567 2.193 0.732 - - 0.733 - - 0.728 - - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
81. cacng2b ENSDARG00000102376 213 2.176 0.743 - - - - 0.717 0.716 - - calcium channel, voltage-dependent, gamma subunit 2b [Source:ZFIN;Acc:ZDB-GENE-090624-3]
82. srsf6b ENSDARG00000016783 9926 2.175 0.752 - - - 0.712 - 0.711 - - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
83. msl2a ENSDARG00000038909 1357 2.174 - - - - - 0.717 0.739 0.718 - male-specific lethal 2 homolog a (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-070912-449]
84. celsr1b ENSDARG00000058259 1219 2.173 0.731 - - - - 0.741 0.701 - - cadherin EGF LAG seven-pass G-type receptor 1b [Source:ZFIN;Acc:ZDB-GENE-050823-4]
85. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 2.146 0.732 - - 0.706 - - - 0.708 - cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
86. ptpreb ENSDARG00000021151 739 1.898 - 0.994 - - - - 0.904 - - protein tyrosine phosphatase, receptor type, E, b [Source:ZFIN;Acc:ZDB-GENE-060503-263]
87. id4 ENSDARG00000045131 2916 1.817 - 0.994 - - - - 0.823 - - inhibitor of DNA binding 4 [Source:ZFIN;Acc:ZDB-GENE-051113-208]
88. nfyba ENSDARG00000039185 1804 1.799 - 0.993 - - - - 0.806 - - nuclear transcription factor Y, beta a [Source:ZFIN;Acc:ZDB-GENE-050417-13]
89. celsr2 ENSDARG00000019726, ENSDARG00000094388 4002 1.78 - - - - - - 0.783 - 0.997 cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
90. FP016176.1 FP016176.1 7030 1.774 - - - - - 0.876 0.898 - -
91. fynb ENSDARG00000025319 1175 1.77 - 0.994 - - - - 0.776 - - FYN proto-oncogene, Src family tyrosine kinase b [Source:ZFIN;Acc:ZDB-GENE-050706-89]
92. si:dkeyp-44a8.2 ENSDARG00000092493 8308 1.769 - 0.995 - - - - 0.774 - - si:dkeyp-44a8.2 [Source:ZFIN;Acc:ZDB-GENE-070705-542]
93. larp7 ENSDARG00000017315 1194 1.766 - 0.993 - - - 0.773 - - - La ribonucleoprotein domain family, member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-6896]
94. FP085405.1 FP085405.1 5189 1.765 - 0.956 - - 0.809 - - - -
95. gfra1b ENSDARG00000102564 821 1.764 - - - - - 0.881 0.883 - - gdnf family receptor alpha 1b [Source:ZFIN;Acc:ZDB-GENE-010226-3]
96. epha4b ENSDARG00000011600 3110 1.752 0.821 - - - - - 0.931 - - eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
97. CBFA2T3 ENSDARG00000079012 6799 1.746 - - - - - 0.839 0.907 - - core-binding factor, runt domain, alpha subunit 2; translocated to, 3 [Source:ZFIN;Acc:ZDB-GENE-070209-2]
98. calm3a ENSDARG00000015050, ENSDARG00000100825 1817 1.728 - - - - - 0.848 0.880 - - calmodulin 3a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030131-5590]
99. tuba1c ENSDARG00000055216 8384 1.726 0.795 - - - - - 0.931 - - tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
100. hoxb9a ENSDARG00000056023 11856 1.719 0.780 - - - - - 0.939 - - homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]

There are 1982 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA