Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for chd3

Gene Name Gene ID Reads Annotation
chd3 ENSDARG00000021405, ENSDARG00000115235 17 chromodomain helicase DNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-121031-4]










Genes with expression patterns similar to chd3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chd3 ENSDARG00000021405, ENSDARG00000115235 17 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-121031-4]
2. oprd1b ENSDARG00000037159 21 2.426 - 0.894 - 0.805 - - - - 0.727 opioid receptor, delta 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8473]
3. BX005106.1 BX005106.1 22 2 1.000 - - - 1.000 - - - -
4. si:dkey-109m8.1 si:dkey-109m8.1 2 2 - - - 1.000 1.000 - - - -
5. si:ch211-240l19.6 ENSDARG00000074613, ENSDARG00000115536 7 1.928 1.000 - 0.928 - - - - - - si:ch211-240l19.6 [Source:ZFIN;Acc:ZDB-GENE-041210-328]
6. si:dkey-199m13.3 si:dkey-199m13.3 2 1.894 - 0.894 1.000 - - - - - -
7. si:ch211-274k16.4 si:ch211-274k16.4 6 1.894 1.000 0.894 - - - - - - -
8. zgc:113142 ENSDARG00000038969 74 1.854 1.000 - - - - 0.854 - - - zgc:113142 [Source:ZFIN;Acc:ZDB-GENE-050220-2]
9. CCSER1 ENSDARG00000075919 16 1.82 0.820 - 1.000 - - - - - - coiled-coil serine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-422]
10. si:ch211-224b1.4 si:ch211-224b1.4 29 1.811 0.917 0.894 - - - - - - -
11. htr5al htr5al 6 1.798 - 0.894 - - 0.904 - - - -
12. si:ch1073-162e11.2 si:ch1073-162e11.2 5 1.796 1.000 0.796 - - - - - - -
13. BX664622.3 BX664622.3 42 1.787 0.893 0.894 - - - - - - -
14. si:ch211-264e16.2 ENSDARG00000094415 4 1.773 - - 1.000 - - - 0.773 - - si:ch211-264e16.2 [Source:ZFIN;Acc:ZDB-GENE-060503-320]
15. si:dkeyp-46h3.2 ENSDARG00000092498 23 1.757 - - 0.984 - - - 0.773 - - si:dkeyp-46h3.2 [Source:ZFIN;Acc:ZDB-GENE-030131-7351]
16. WDR63 ENSDARG00000105093 13 1.756 - - 1.000 - - - - - 0.756 WD repeat domain 63 [Source:HGNC Symbol;Acc:HGNC:30711]
17. twist1b ENSDARG00000076010 88 1.751 0.805 0.946 - - - - - - - twist family bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-050417-357]
18. sebox ENSDARG00000042526 2 1.721 - - - - 1.000 - 0.721 - - SEBOX homeobox [Source:ZFIN;Acc:ZDB-GENE-021206-4]
19. desi1b ENSDARG00000089529, ENSDARG00000109374, ENSDARG00000111355 3 1.703 - 0.894 0.809 - - - - - - desumoylating isopeptidase 1b [Source:ZFIN;Acc:ZDB-GENE-040426-936]
20. KBTBD3 ENSDARG00000060512 42 1.7 0.806 0.894 - - - - - - - kelch repeat and BTB (POZ) domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-131016-5]
21. cx32.2 ENSDARG00000076789 23 1.685 - - 0.828 - 0.857 - - - - connexin 32.2 [Source:ZFIN;Acc:ZDB-GENE-050303-1]
22. pxmp2 ENSDARG00000003144 50 1.667 - 0.894 - - - - 0.773 - - peroxisomal membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-184]
23. opn4.1 ENSDARG00000007553 66 1.661 0.798 - 0.863 - - - - - - opsin 4.1 [Source:ZFIN;Acc:ZDB-GENE-030314-2]
24. si:dkey-208a9.1 si:dkey-208a9.1 3 1.65 - 0.894 - - - - - - 0.756
25. nphp1 ENSDARG00000009046, ENSDARG00000113790 104 1.62 0.893 - - - - - 0.727 - - nephronophthisis 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1234]
26. TDRD7B ENSDARG00000077523 124 1.597 0.790 0.807 - - - - - - - tudor domain containing 7 b [Source:ZFIN;Acc:ZDB-GENE-150109-14]
27. si:zfos-364h11.1 99 1.548 - 0.828 - 0.720 - - - - - si:zfos-364h11.1, transcript variant X4
28. TECPR1 TECPR1 173 1.538 0.805 - - - - - 0.733 - -
29. fxyd6 ENSDARG00000100971 51 1.528 - 0.743 - - - - - 0.785 - FXYD domain containing ion transport regulator 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5919]
30. nitr3a ENSDARG00000110676 13 1.528 - - - 0.825 - - - 0.703 - novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
31. si:ch73-95a24.1 si:ch73-95a24.1 11 1.518 - - 0.762 - 0.756 - - - -
32. ptrfb ptrfb 567 1.518 0.803 - - - - - 0.715 - -
33. epsti1 ENSDARG00000094578 33 1.499 - 0.726 - - - - 0.773 - - epithelial stromal interaction 1 [Source:ZFIN;Acc:ZDB-GENE-081104-172]
34. zgc:91999 ENSDARG00000105001 129 1.485 0.780 - - - - - 0.705 - - zgc:91999 [Source:ZFIN;Acc:ZDB-GENE-040801-241]
35. efna3a ENSDARG00000014675 68 1.476 0.717 - - - 0.759 - - - - ephrin-A3a [Source:ZFIN;Acc:ZDB-GENE-060503-186]
36. znf395 znf395 60 1.463 0.724 0.739 - - - - - - -
37. ROCK2_3 ROCK2_3 12 1.452 - - 0.724 - - 0.728 - - -
38. RTKN_1 RTKN_1 176 1.425 - - - - - 0.723 0.702 - -
39. si:dkeyp-110e4.11 ENSDARG00000071585 148 1.413 - 0.707 - - - - 0.706 - - si:dkeyp-110e4.11 [Source:ZFIN;Acc:ZDB-GENE-070424-267]
40. C5HXorf57 C5HXorf57 4 1 1.000 - - - - - - - -
41. si:ch211-57m13.1 ENSDARG00000095927 1 1 - - - - 1.000 - - - - si:ch211-57m13.1 [Source:ZFIN;Acc:ZDB-GENE-090312-43]
42. si:ch211-250m6.4 ENSDARG00000068869, ENSDARG00000116106 1 1 - - - - 1.000 - - - - si:ch211-250m6.4 [Source:ZFIN;Acc:ZDB-GENE-061009-21]
43. si:rp71-36n21.1 93 1 - - - - - - 1.000 - - si:rp71-36n21.1
44. fgl2 fgl2 9 1 - - - - 1.000 - - - -
45. CABZ01057940.1 CABZ01057940.1 4 1 1.000 - - - - - - - -
46. hsd17b7_1 ENSDARG00000088140 36 1 - 1.000 - - - - - - - hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
47. BX005294.5 BX005294.5 5 1 1.000 - - - - - - - -
48. AC024175.11 AC024175.11 12 1 1.000 - - - - - - - -
49. BX465205.1 ENSDARG00000097139 64 1 1.000 - - - - - - - -
50. cacng8a ENSDARG00000020450 32 1 - - 1.000 - - - - - - calcium channel, voltage-dependent, gamma subunit 8a [Source:ZFIN;Acc:ZDB-GENE-050417-239]
51. si:ch1073-181h11.2 ENSDARG00000103883 24 1 - - 1.000 - - - - - - si:ch1073-181h11.2 [Source:ZFIN;Acc:ZDB-GENE-081031-58]
52. BX927253.1 ENSDARG00000096072 1 1 - - - - 1.000 - - - -
53. abca4a ENSDARG00000057169 27 1 1.000 - - - - - - - - ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
54. si:ch211-262h13.4 si:ch211-262h13.4 3 1 - - - - 1.000 - - - -
55. si:dkey-111e8.5 ENSDARG00000093960 28 1 1.000 - - - - - - - - si:dkey-111e8.5 [Source:ZFIN;Acc:ZDB-GENE-060526-192]
56. CABZ01079979.1 CABZ01079979.1 1 1 - - - - 1.000 - - - -
57. si:dkey-192p21.6 ENSDARG00000091212 3 1 - - - 1.000 - - - - - si:dkey-192p21.6 [Source:ZFIN;Acc:ZDB-GENE-060503-809]
58. CTRL ENSDARG00000068680 1 1 - - - - 1.000 - - - - chymotrypsin-like [Source:ZFIN;Acc:ZDB-GENE-040912-147]
59. CR751224.1 ENSDARG00000106298 8 1 1.000 - - - - - - - - kelch-like protein 12 [Source:NCBI gene;Acc:101884662]
60. irf1a ENSDARG00000043492 5 1 - - 1.000 - - - - - - interferon regulatory factor 1a [Source:ZFIN;Acc:ZDB-GENE-060421-4031]
61. si:ch211-229l10.11 ENSDARG00000101223 3 1 - - - - 1.000 - - - - si:ch211-229l10.11 [Source:ZFIN;Acc:ZDB-GENE-110913-131]
62. CR854942.1 ENSDARG00000110092 1 1 - - 1.000 - - - - - -
63. si:ch1073-111a5.3 si:ch1073-111a5.3 0 1 - - - - 1.000 - - - -
64. wee2 ENSDARG00000012718, ENSDARG00000112246 2 1 - - 1.000 - - - - - - WEE1 homolog 2 (S. pombe) [Source:ZFIN;Acc:ZDB-GENE-030131-5682]
65. si:dkey-47k16.4_1 ENSDARG00000113005 5 1 1.000 - - - - - - - - si:dkey-47k16.4 [Source:ZFIN;Acc:ZDB-GENE-110914-131]
66. drd4a ENSDARG00000038363 82 1 - 1.000 - - - - - - - dopamine receptor D4a [Source:ZFIN;Acc:ZDB-GENE-070112-996]
67. si:dkey-92j12.5 ENSDARG00000094677 5 1 - - - - 1.000 - - - - si:dkey-92j12.5 [Source:ZFIN;Acc:ZDB-GENE-090313-354]
68. DNAI1 DNAI1 11 1 - - - - 1.000 - - - -
69. CR790388.1_1 ENSDARG00000078922 1 1 1.000 - - - - - - - -
70. si:dkey-106l3.7 ENSDARG00000093444 29 1 1.000 - - - - - - - - si:dkey-106l3.7 [Source:ZFIN;Acc:ZDB-GENE-091204-216]
71. si:ch211-113a14.14_1 si:ch211-113a14.14_1 7 1 - - - 1.000 - - - - -
72. PLA2G4C_2 PLA2G4C_2 10 1 - - - - 1.000 - - - -
73. si:ch211-199m9.3 50 1 - - - - 1.000 - - - - si:ch211-199m9.3, transcript variant X3
74. NOD1 ENSDARG00000036308 1 1 - - 1.000 - - - - - - nucleotide-binding oligomerization domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-071116-9]
75. BX547934.1 ENSDARG00000097061 35 1 1.000 - - - - - - - -
76. ankrd1b ENSDARG00000076192 204 1 1.000 - - - - - - - - ankyrin repeat domain 1b (cardiac muscle) [Source:ZFIN;Acc:ZDB-GENE-070820-13]
77. FAT1 FAT1 689 1 1.000 - - - - - - - -
78. si:dkey-103k4.3 si:dkey-103k4.3 2 1 - - 1.000 - - - - - -
79. si:dkey-88j15.3 ENSDARG00000076573 1 1 1.000 - - - - - - - - si:dkey-88j15.3 [Source:ZFIN;Acc:ZDB-GENE-100922-28]
80. si:ch73-91k6.6 si:ch73-91k6.6 1 1 - - - 1.000 - - - - -
81. CR354540.1 ENSDARG00000004051 10 1 - - 1.000 - - - - - - cytochrome P450, family 7, subfamily A, polypeptide 1b [Source:NCBI gene;Acc:559097]
82. si:dkey-188k17.2 7 1 1.000 - - - - - - - - si:dkey-188k17.2
83. TRIM35 TRIM35 100 1 - - - - 1.000 - - - -
84. BX927362.1 ENSDARG00000097469 13 1 - - 1.000 - - - - - -
85. doc2d ENSDARG00000079962 76 1 1.000 - - - - - - - - double C2-like domains, delta [Source:ZFIN;Acc:ZDB-GENE-081104-451]
86. 5S_rRNA_11 5S_rRNA_11 1 1 - - - 1.000 - - - - -
87. RBBP6_12 RBBP6_12 0 1 - - - - 1.000 - - - -
88. si:dkey-15f23.2 si:dkey-15f23.2 2 1 - - - - 1.000 - - - -
89. arl10 37 1 - - - - 1.000 - - - - ADP-ribosylation factor-like 10
90. dnaaf2 ENSDARG00000103132 24 1 1.000 - - - - - - - - dynein, axonemal, assembly factor 2 [Source:ZFIN;Acc:ZDB-GENE-050809-128]
91. gpr157 ENSDARG00000034975, ENSDARG00000115075 61 1 1.000 - - - - - - - - G protein-coupled receptor 157 [Source:ZFIN;Acc:ZDB-GENE-050809-126]
92. si:dkey-78k22.2 si:dkey-78k22.2 2 1 - - 1.000 - - - - - -
93. piwil2 ENSDARG00000062601 14 1 - - 1.000 - - - - - - piwi-like RNA-mediated gene silencing 2 [Source:ZFIN;Acc:ZDB-GENE-060526-345]
94. si:ch211-125e6.6 si:ch211-125e6.6 0 1 - - - - 1.000 - - - -
95. tbc1d20 ENSDARG00000032298 1 1 - - - - 1.000 - - - - TBC1 domain family, member 20 [Source:ZFIN;Acc:ZDB-GENE-050626-61]
96. DPYSL2 DPYSL2 4 1 1.000 - - - - - - - -
97. CR558302.1 ENSDARG00000115782 0 1 - - - - 1.000 - - - -
98. si:dkey-24l11.3 si:dkey-24l11.3 9 1 1.000 - - - - - - - -
99. ttr ENSDARG00000037191 11 1 1.000 - - - - - - - - transthyretin (prealbumin, amyloidosis type I) [Source:ZFIN;Acc:ZDB-GENE-040927-14]
100. cox5aa ENSDARG00000088383 21 1 1.000 - - - - - - - - cytochrome c oxidase subunit 5Aa [Source:ZFIN;Acc:ZDB-GENE-050522-133]

There are 1013 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA