Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for chd3

Gene Name Gene ID Reads Annotation
chd3 ENSDARG00000021405, ENSDARG00000115235 17 chromodomain helicase DNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-121031-4]










Genes with expression patterns similar to chd3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. chd3 ENSDARG00000021405, ENSDARG00000115235 17 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 chromodomain helicase DNA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-121031-4]
2. oprd1b ENSDARG00000037159 21 2.426 - 0.894 - 0.805 - - - - 0.727 opioid receptor, delta 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8473]
3. BX005106.1 BX005106.1 22 2 1.000 - - - 1.000 - - - -
4. si:dkey-109m8.1 si:dkey-109m8.1 2 2 - - - 1.000 1.000 - - - -
5. si:ch211-240l19.6 ENSDARG00000074613, ENSDARG00000115536 7 1.928 1.000 - 0.928 - - - - - - si:ch211-240l19.6 [Source:ZFIN;Acc:ZDB-GENE-041210-328]
6. si:ch211-274k16.4 si:ch211-274k16.4 6 1.894 1.000 0.894 - - - - - - -
7. si:dkey-199m13.3 si:dkey-199m13.3 2 1.894 - 0.894 1.000 - - - - - -
8. zgc:113142 ENSDARG00000038969 74 1.854 1.000 - - - - 0.854 - - - zgc:113142 [Source:ZFIN;Acc:ZDB-GENE-050220-2]
9. CCSER1 ENSDARG00000075919 16 1.82 0.820 - 1.000 - - - - - - coiled-coil serine-rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-081104-422]
10. si:ch211-224b1.4 si:ch211-224b1.4 29 1.811 0.917 0.894 - - - - - - -
11. htr5al htr5al 6 1.798 - 0.894 - - 0.904 - - - -
12. si:ch1073-162e11.2 si:ch1073-162e11.2 5 1.796 1.000 0.796 - - - - - - -
13. BX664622.3 BX664622.3 42 1.787 0.893 0.894 - - - - - - -
14. si:ch211-264e16.2 ENSDARG00000094415 4 1.773 - - 1.000 - - - 0.773 - - si:ch211-264e16.2 [Source:ZFIN;Acc:ZDB-GENE-060503-320]
15. si:dkeyp-46h3.2 ENSDARG00000092498 23 1.757 - - 0.984 - - - 0.773 - - si:dkeyp-46h3.2 [Source:ZFIN;Acc:ZDB-GENE-030131-7351]
16. WDR63 ENSDARG00000105093 13 1.756 - - 1.000 - - - - - 0.756 WD repeat domain 63 [Source:HGNC Symbol;Acc:HGNC:30711]
17. twist1b ENSDARG00000076010 88 1.751 0.805 0.946 - - - - - - - twist family bHLH transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-050417-357]
18. sebox ENSDARG00000042526 2 1.721 - - - - 1.000 - 0.721 - - SEBOX homeobox [Source:ZFIN;Acc:ZDB-GENE-021206-4]
19. desi1b ENSDARG00000089529, ENSDARG00000109374, ENSDARG00000111355 3 1.703 - 0.894 0.809 - - - - - - desumoylating isopeptidase 1b [Source:ZFIN;Acc:ZDB-GENE-040426-936]
20. KBTBD3 ENSDARG00000060512 42 1.7 0.806 0.894 - - - - - - - kelch repeat and BTB (POZ) domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-131016-5]
21. cx32.2 ENSDARG00000076789 23 1.685 - - 0.828 - 0.857 - - - - connexin 32.2 [Source:ZFIN;Acc:ZDB-GENE-050303-1]
22. pxmp2 ENSDARG00000003144 50 1.667 - 0.894 - - - - 0.773 - - peroxisomal membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-040912-184]
23. opn4.1 ENSDARG00000007553 66 1.661 0.798 - 0.863 - - - - - - opsin 4.1 [Source:ZFIN;Acc:ZDB-GENE-030314-2]
24. si:dkey-208a9.1 si:dkey-208a9.1 3 1.65 - 0.894 - - - - - - 0.756
25. nphp1 ENSDARG00000009046, ENSDARG00000113790 104 1.62 0.893 - - - - - 0.727 - - nephronophthisis 1 [Source:ZFIN;Acc:ZDB-GENE-060929-1234]
26. TDRD7B ENSDARG00000077523 124 1.597 0.790 0.807 - - - - - - - tudor domain containing 7 b [Source:ZFIN;Acc:ZDB-GENE-150109-14]
27. si:zfos-364h11.1 99 1.548 - 0.828 - 0.720 - - - - - si:zfos-364h11.1, transcript variant X4
28. TECPR1 TECPR1 173 1.538 0.805 - - - - - 0.733 - -
29. fxyd6 ENSDARG00000100971 51 1.528 - 0.743 - - - - - 0.785 - FXYD domain containing ion transport regulator 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5919]
30. nitr3a ENSDARG00000110676 13 1.528 - - - 0.825 - - - 0.703 - novel immune-type receptor 3a [Source:NCBI gene;Acc:60649]
31. si:ch73-95a24.1 si:ch73-95a24.1 11 1.518 - - 0.762 - 0.756 - - - -
32. ptrfb ptrfb 567 1.518 0.803 - - - - - 0.715 - -
33. epsti1 ENSDARG00000094578 33 1.499 - 0.726 - - - - 0.773 - - epithelial stromal interaction 1 [Source:ZFIN;Acc:ZDB-GENE-081104-172]
34. zgc:91999 ENSDARG00000105001 129 1.485 0.780 - - - - - 0.705 - - zgc:91999 [Source:ZFIN;Acc:ZDB-GENE-040801-241]
35. efna3a ENSDARG00000014675 68 1.476 0.717 - - - 0.759 - - - - ephrin-A3a [Source:ZFIN;Acc:ZDB-GENE-060503-186]
36. znf395 znf395 60 1.463 0.724 0.739 - - - - - - -
37. ROCK2_3 ROCK2_3 12 1.452 - - 0.724 - - 0.728 - - -
38. RTKN_1 RTKN_1 176 1.425 - - - - - 0.723 0.702 - -
39. si:dkeyp-110e4.11 ENSDARG00000071585 148 1.413 - 0.707 - - - - 0.706 - - si:dkeyp-110e4.11 [Source:ZFIN;Acc:ZDB-GENE-070424-267]
40. si:ch211-57m13.1 ENSDARG00000095927 1 1 - - - - 1.000 - - - - si:ch211-57m13.1 [Source:ZFIN;Acc:ZDB-GENE-090312-43]
41. igsf5 igsf5 85 1 - - - 1.000 - - - - -
42. ATG16L2 ENSDARG00000043238, ENSDARG00000109384 0 1 - - - - 1.000 - - - - ATG16 autophagy related 16-like 2 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060503-197]
43. calcr ENSDARG00000028845, ENSDARG00000109526 17 1 1.000 - - - - - - - - calcitonin receptor [Source:ZFIN;Acc:ZDB-GENE-060503-420]
44. si:dkeyp-98a7.1 100 1 - 1.000 - - - - - - - si:dkeyp-98a7.1
45. si:dkey-111e8.5 ENSDARG00000093960 28 1 1.000 - - - - - - - - si:dkey-111e8.5 [Source:ZFIN;Acc:ZDB-GENE-060526-192]
46. avp ENSDARG00000058567 4 1 - - - - 1.000 - - - - arginine vasopressin [Source:ZFIN;Acc:ZDB-GENE-030407-2]
47. si:dkey-106l3.7 ENSDARG00000093444 29 1 1.000 - - - - - - - - si:dkey-106l3.7 [Source:ZFIN;Acc:ZDB-GENE-091204-216]
48. si:ch73-223d24.4 si:ch73-223d24.4 5 1 1.000 - - - - - - - -
49. pofut2 ENSDARG00000045175 6 1 1.000 - - - - - - - - protein O-fucosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3595]
50. lgals9l1 ENSDARG00000025903 58 1 - - 1.000 - - - - - - lectin, galactoside-binding, soluble, 9 (galectin 9)-like 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9543]
51. mchr2 ENSDARG00000036117 2 1 - - - 1.000 - - - - - melanin-concentrating hormone receptor 2 [Source:ZFIN;Acc:ZDB-GENE-030502-6]
52. SYCP2L 3 1 - - - - 1.000 - - - - synaptonemal complex protein 2-like, transcript variant X3
53. si:dkey-192p21.6 ENSDARG00000091212 3 1 - - - 1.000 - - - - - si:dkey-192p21.6 [Source:ZFIN;Acc:ZDB-GENE-060503-809]
54. hbaa2 ENSDARG00000069735 10 1 1.000 - - - - - - - - hemoglobin, alpha adult 2 [Source:ZFIN;Acc:ZDB-GENE-081104-38]
55. mvb12ba ENSDARG00000091619 18 1 - - - - 1.000 - - - - multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
56. FAT1 FAT1 689 1 1.000 - - - - - - - -
57. CABZ01033130.1 CABZ01033130.1 5 1 1.000 - - - - - - - -
58. prox1b ENSDARG00000088810, ENSDARG00000113014 33 1 - 1.000 - - - - - - - prospero homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050107-3]
59. CABZ01079015.1 CABZ01079015.1 10 1 1.000 - - - - - - - -
60. CU463790.1 CU463790.1 60 1 1.000 - - - - - - - -
61. im:7151068 im:7151068 2 1 - - - - 1.000 - - - -
62. OTOG ENSDARG00000068460 60 1 1.000 - - - - - - - - otogelin [Source:ZFIN;Acc:ZDB-GENE-120228-1]
63. arl10 37 1 - - - - 1.000 - - - - ADP-ribosylation factor-like 10
64. si:ch211-53m15.1 si:ch211-53m15.1 28 1 - - - - 1.000 - - - -
65. col17a1b ENSDARG00000079011 143 1 1.000 - - - - - - - - collagen, type XVII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-7145]
66. cel.1 ENSDARG00000017490 4 1 - - - - 1.000 - - - - carboxyl ester lipase, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1201]
67. ZC3H8 ZC3H8 114 1 - - - 1.000 - - - - -
68. si:dkeyp-82h4.2 si:dkeyp-82h4.2 494 1 1.000 - - - - - - - -
69. EPM2AIP1 EPM2AIP1 4 1 - - 1.000 - - - - - -
70. cdh4_1 ENSDARG00000015002, ENSDARG00000110803, ENSDARG00000110870 13 1 1.000 - - - - - - - - cadherin 4, type 1, R-cadherin (retinal) [Source:ZFIN;Acc:ZDB-GENE-991207-1]
71. si:dkeyp-116h7.2 si:dkeyp-116h7.2 7 1 - - - 1.000 - - - - -
72. si:ch1073-181h11.2 ENSDARG00000103883 24 1 - - 1.000 - - - - - - si:ch1073-181h11.2 [Source:ZFIN;Acc:ZDB-GENE-081031-58]
73. si:dkey-222o15.3 si:dkey-222o15.3 3 1 - - - - 1.000 - - - -
74. GRAMD3 GRAMD3 4 1 - - 1.000 - - - - - -
75. iffo1a ENSDARG00000062976 5 1 1.000 - - - - - - - - intermediate filament family orphan 1a [Source:ZFIN;Acc:ZDB-GENE-060503-418]
76. gpr157 ENSDARG00000034975, ENSDARG00000115075 61 1 1.000 - - - - - - - - G protein-coupled receptor 157 [Source:ZFIN;Acc:ZDB-GENE-050809-126]
77. hsd17b7_1 ENSDARG00000088140 36 1 - 1.000 - - - - - - - hydroxysteroid (17-beta) dehydrogenase 7 [Source:ZFIN;Acc:ZDB-GENE-061013-378]
78. chtopb ENSDARG00000070430 29 1 - - 1.000 - - - - - - chromatin target of PRMT1b [Source:ZFIN;Acc:ZDB-GENE-061013-712]
79. piwil2 ENSDARG00000062601 14 1 - - 1.000 - - - - - - piwi-like RNA-mediated gene silencing 2 [Source:ZFIN;Acc:ZDB-GENE-060526-345]
80. hpse ENSDARG00000063634, ENSDARG00000112827 35 1 - - - - 1.000 - - - - heparanase [Source:ZFIN;Acc:ZDB-GENE-041111-200]
81. doc2d ENSDARG00000079962 76 1 1.000 - - - - - - - - double C2-like domains, delta [Source:ZFIN;Acc:ZDB-GENE-081104-451]
82. cyp3a65 ENSDARG00000103295 7 1 - - - 1.000 - - - - - cytochrome P450, family 3, subfamily A, polypeptide 65 [Source:ZFIN;Acc:ZDB-GENE-050604-1]
83. si:dkey-78k22.2 si:dkey-78k22.2 2 1 - - 1.000 - - - - - -
84. si:ch211-262h13.4 si:ch211-262h13.4 3 1 - - - - 1.000 - - - -
85. si:dkey-179a6.2 si:dkey-179a6.2 1 1 1.000 - - - - - - - -
86. MLF1IP MLF1IP 15 1 - - - - 1.000 - - - -
87. si:ch73-91k6.6 si:ch73-91k6.6 1 1 - - - 1.000 - - - - -
88. si:ch73-196i15.4 si:ch73-196i15.4 0 1 - - - - 1.000 - - - -
89. ankrd1b ENSDARG00000076192 204 1 1.000 - - - - - - - - ankyrin repeat domain 1b (cardiac muscle) [Source:ZFIN;Acc:ZDB-GENE-070820-13]
90. si:dkey-92j12.5 ENSDARG00000094677 5 1 - - - - 1.000 - - - - si:dkey-92j12.5 [Source:ZFIN;Acc:ZDB-GENE-090313-354]
91. mep1a.1 ENSDARG00000029747 4 1 - - - - 1.000 - - - - meprin A, alpha (PABA peptide hydrolase), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-041001-209]
92. map3k9 ENSDARG00000013491 1 1 - - - - 1.000 - - - - mitogen-activated protein kinase kinase kinase 9 [Source:ZFIN;Acc:ZDB-GENE-081113-5]
93. si:ch211-203b20.7 ENSDARG00000053036, ENSDARG00000113237 0 1 - - - - 1.000 - - - - si:ch211-203b20.7 [Source:ZFIN;Acc:ZDB-GENE-060503-302]
94. 5S_rRNA_11 5S_rRNA_11 1 1 - - - 1.000 - - - - -
95. amy2a ENSDARG00000013856 13 1 - - - - 1.000 - - - - amylase, alpha 2A (pancreatic) [Source:ZFIN;Acc:ZDB-GENE-040426-2393]
96. PIK3CA ENSDARG00000075456 39 1 1.000 - - - - - - - - phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha [Source:ZFIN;Acc:ZDB-GENE-130409-1]
97. U1_52 U1_52 1 1 - - 1.000 - - - - - -
98. adipoqa ENSDARG00000062228 7 1 - - 1.000 - - - - - - adiponectin, C1Q and collagen domain containing, a [Source:ZFIN;Acc:ZDB-GENE-080423-2]
99. hepacam 73 1 1.000 - - - - - - - - hepatic and glial cell adhesion molecule, transcript variant X2
100. TTC29 ENSDARG00000058885, ENSDARG00000112776 1 1 - - 1.000 - - - - - - tetratricopeptide repeat domain 29 [Source:ZFIN;Acc:ZDB-GENE-100922-181]

There are 1013 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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