Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for cdx4

Gene Name Gene ID Reads Annotation
cdx4 ENSDARG00000036292 1225 caudal type homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-980526-330]










Genes with expression patterns similar to cdx4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cdx4 ENSDARG00000036292 1225 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 caudal type homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-980526-330]
2. EMILIN3 1347 2.34 - - 0.732 0.701 - - - - 0.907 elastin microfibril interfacer 3
3. cbsb ENSDARG00000010946 5779 1.892 - 0.988 - - - - - - 0.904 cystathionine-beta-synthase b [Source:ZFIN;Acc:ZDB-GENE-021030-3]
4. MYL4 ENSDARG00000011519 309 1.775 - - - - - - - 0.816 0.959 myosin, light chain 4, alkali; atrial, embryonic [Source:ZFIN;Acc:ZDB-GENE-050626-112]
5. prss12 ENSDARG00000061830 593 1.763 - - - - - - - 0.858 0.905 serine protease 12 [Source:ZFIN;Acc:ZDB-GENE-090313-45]
6. glsb ENSDARG00000040705 1439 1.726 - - - - - - - 0.782 0.944 glutaminase b [Source:ZFIN;Acc:ZDB-GENE-030616-550]
7. trim33l ENSDARG00000086126 241 1.689 - - - - - - 0.743 - 0.946 tripartite motif containing 33, like [Source:ZFIN;Acc:ZDB-GENE-030131-5695]
8. hmgcra ENSDARG00000052734, ENSDARG00000109336 45 1.688 - - - - - - 0.899 0.789 - 3-hydroxy-3-methylglutaryl-CoA reductase a [Source:ZFIN;Acc:ZDB-GENE-040401-2]
9. NF1 NF1 62 1.687 - - - - - - 0.876 0.811 -
10. DNAH11 ENSDARG00000077384, ENSDARG00000094282 372 1.668 - - - 0.734 - - - - 0.934 dynein, axonemal, heavy chain 11 [Source:ZFIN;Acc:ZDB-GENE-100922-8]
11. GMIP ENSDARG00000077249 43 1.651 - - - - - - 0.757 0.894 - GEM interacting protein [Source:ZFIN;Acc:ZDB-GENE-130530-823]
12. greb1 ENSDARG00000070794 1741 1.643 - - - - - 0.710 - - 0.933 growth regulating estrogen receptor binding 1 [Source:ZFIN;Acc:ZDB-GENE-070112-332]
13. si:dkey-258p11.1 si:dkey-258p11.1 48 1.614 - - - - - 0.715 0.899 - -
14. gbp3 ENSDARG00000003244 90 1.613 - - - - - 0.797 - 0.816 - guanylate binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-070912-176]
15. zgc:158654 19 1.609 - - - - - 0.821 0.788 - - zgc:158654, transcript variant X1
16. hoxc12a ENSDARG00000070352 7409 1.608 - - - 0.831 0.777 - - - - homeobox C12a [Source:ZFIN;Acc:ZDB-GENE-000822-6]
17. nradd ENSDARG00000057143 1159 1.594 - - 0.810 - 0.784 - - - - neurotrophin receptor associated death domain [Source:ZFIN;Acc:ZDB-GENE-030131-2537]
18. sall4 ENSDARG00000044485 1694 1.591 - - 0.709 - - - - - 0.882 spalt-like transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-060328-2]
19. ntla ntla 926 1.579 - - - - - - - 0.726 0.853
20. EPT1 EPT1 1912 1.576 - - - - - 0.721 - - 0.855
21. C17H14orf1 C17H14orf1 256 1.576 - - - - - 0.702 - 0.874 -
22. fam118b ENSDARG00000078983 1822 1.575 - - - - - 0.759 - - 0.816 family with sequence similarity 118, member B [Source:ZFIN;Acc:ZDB-GENE-060810-6]
23. nme5 ENSDARG00000041617 135 1.569 - - - - - - 0.793 0.776 - NME/NM23 family member 5 [Source:ZFIN;Acc:ZDB-GENE-040718-221]
24. arnt2 ENSDARG00000103697 5731 1.546 - 0.820 - - - - 0.726 - - aryl-hydrocarbon receptor nuclear translocator 2 [Source:ZFIN;Acc:ZDB-GENE-001207-3]
25. CR387996.1 ENSDARG00000097774 3037 1.546 - 0.826 - - - - - - 0.720
26. atp1a1b ENSDARG00000019856, ENSDARG00000115121 1953 1.544 - - - - - - 0.797 - 0.747 ATPase Na+/K+ transporting subunit alpha 1b [Source:ZFIN;Acc:ZDB-GENE-001212-5]
27. HOOK3 ENSDARG00000114329 1980 1.54 - - - - - - - 0.735 0.805 hook microtubule tethering protein 3 [Source:HGNC Symbol;Acc:HGNC:23576]
28. lum ENSDARG00000045580 5395 1.535 - 0.821 - - - - - - 0.714 lumican [Source:ZFIN;Acc:ZDB-GENE-040625-24]
29. cxcl12b ENSDARG00000055100, ENSDARG00000113088 4476 1.529 - 0.824 0.705 - - - - - - chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1]
30. arhgef9a ENSDARG00000061746 58 1.526 - - - - - 0.797 - 0.729 - Cdc42 guanine nucleotide exchange factor (GEF) 9a [Source:ZFIN;Acc:ZDB-GENE-070705-271]
31. lrrc9 ENSDARG00000054352 25 1.498 - - - - - 0.788 0.710 - - leucine rich repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-080917-56]
32. gnaia ENSDARG00000044760, ENSDARG00000109225 2062 1.493 0.729 - - - - - - - 0.764 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide a [Source:ZFIN;Acc:ZDB-GENE-030131-2229]
33. hoxa10b ENSDARG00000031337 3992 1.485 - - 0.751 0.734 - - - - - homeobox A10b [Source:ZFIN;Acc:ZDB-GENE-990415-97]
34. mbpb ENSDARG00000089413 3334 1.485 - - - 0.725 - - - - 0.760 myelin basic protein b [Source:ZFIN;Acc:ZDB-GENE-030429-21]
35. si:ch73-265d7.2 ENSDARG00000116713 2142 1.481 - - 0.759 - - - 0.722 - - si:ch73-265d7.2 [Source:ZFIN;Acc:ZDB-GENE-100922-146]
36. si:dkey-193p11.2 ENSDARG00000096712 3500 1.461 - - - 0.730 0.731 - - - - si:dkey-193p11.2 [Source:ZFIN;Acc:ZDB-GENE-030131-8407]
37. BX511121.1 ENSDARG00000029997 1774 1.443 - - - - 0.706 - 0.737 - -
38. C8H9orf3 C8H9orf3 414 1.443 - - 0.726 0.717 - - - - -
39. COL13A1 1565 1.419 - - 0.707 - 0.712 - - - - collagen, type XIII, alpha 1, transcript variant X1
40. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 0.984 - 0.984 - - - - - - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
41. UBE2D2 ENSDARG00000043484 11723 0.981 - 0.981 - - - - - - - ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-120312-1]
42. hoxb13a ENSDARG00000056015 174 0.981 - - - - - - - - 0.981 homeobox B13a [Source:ZFIN;Acc:ZDB-GENE-050812-1]
43. BX004880.1 BX004880.1 638 0.974 - - - - - - - - 0.974
44. eve1 ENSDARG00000056012 144 0.965 - - - - - - - - 0.965 even-skipped-like1 [Source:ZFIN;Acc:ZDB-GENE-980526-69]
45. si:ch211-232i5.1 ENSDARG00000078072 1337 0.962 - - - - - - - - 0.962 si:ch211-232i5.1 [Source:ZFIN;Acc:ZDB-GENE-070705-127]
46. gpr1 ENSDARG00000101366 733 0.962 - - - - - - - - 0.962 G protein-coupled receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091204-457]
47. tcea2 ENSDARG00000012927 440 0.959 - - - - - - - - 0.959 transcription elongation factor A (SII), 2 [Source:ZFIN;Acc:ZDB-GENE-040426-985]
48. TIMP4 TIMP4 599 0.959 - - - - - - - - 0.959
49. PFKL_1 PFKL_1 298 0.958 - - - - - - - - 0.958
50. FP236810.2 ENSDARG00000113218 140 0.958 - - - - - - - - 0.958 UDP-glucuronosyltransferase 2B20-like [Source:NCBI gene;Acc:571561]
51. id2a ENSDARG00000055283 7428 0.956 - 0.956 - - - - - - - inhibitor of DNA binding 2a [Source:ZFIN;Acc:ZDB-GENE-020910-1]
52. cyr61 ENSDARG00000023062 1213 0.955 - - - - - - - - 0.955 cysteine-rich, angiogenic inducer, 61 [Source:ZFIN;Acc:ZDB-GENE-040426-3]
53. tp53i11b ENSDARG00000006025 569 0.955 - - - - - - - - 0.955 tumor protein p53 inducible protein 11b [Source:ZFIN;Acc:ZDB-GENE-030131-6328]
54. si:ch73-138e16.8 175 0.954 - - - - - - - - 0.954 si:ch73-138e16.8
55. FUZ ENSDARG00000079730 821 0.954 - - - - - - - - 0.954 fuzzy planar cell polarity protein [Source:ZFIN;Acc:ZDB-GENE-090609-2]
56. ecd ENSDARG00000022944, ENSDARG00000114710 273 0.954 - - - - - - - - 0.954 ecdysoneless homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6304]
57. TPMT TPMT 138 0.954 - - - - - - - - 0.954
58. ERAP1_1 ERAP1_1 64 0.953 - - - - - - - - 0.953
59. si:dkey-246e3.4 ENSDARG00000086390 50 0.953 - - - - - - - - 0.953 si:dkey-246e3.4 [Source:ZFIN;Acc:ZDB-GENE-130531-58]
60. si:ch211-89o5.1 si:ch211-89o5.1 91 0.953 - - - - - - - - 0.953
61. CABZ01063402.1 CABZ01063402.1 64 0.953 - - - - - - - - 0.953
62. CABZ01032467.1 CABZ01032467.1 400 0.953 - - - - - - - - 0.953
63. MIER3 MIER3 114 0.953 - - - - - - - - 0.953
64. dnajc12 ENSDARG00000086691 260 0.953 - - - - - - - - 0.953 DnaJ (Hsp40) homolog, subfamily C, member 12 [Source:ZFIN;Acc:ZDB-GENE-070801-3]
65. casp2 ENSDARG00000062052 559 0.952 - - - - - - - - 0.952 caspase 2, apoptosis-related cysteine peptidase [Source:ZFIN;Acc:ZDB-GENE-030825-3]
66. sub1a ENSDARG00000053446 13383 0.952 - 0.952 - - - - - - - SUB1 homolog, transcriptional regulator a [Source:ZFIN;Acc:ZDB-GENE-050522-151]
67. enpp6 ENSDARG00000040469 187 0.952 - - - - - - - - 0.952 ectonucleotide pyrophosphatase/phosphodiesterase 6 [Source:ZFIN;Acc:ZDB-GENE-031205-1]
68. arl6 ENSDARG00000032056, ENSDARG00000113281 238 0.952 - - - - - - - - 0.952 ADP-ribosylation factor-like 6 [Source:ZFIN;Acc:ZDB-GENE-041219-2]
69. cd36 ENSDARG00000032639 288 0.952 - - - - - - - - 0.952 CD36 molecule (thrombospondin receptor) [Source:ZFIN;Acc:ZDB-GENE-040718-55]
70. CT030712.1 ENSDARG00000044355 83 0.952 - - - - - - - - 0.952 uncharacterized LOC100534830 [Source:NCBI gene;Acc:100534830]
71. per1b ENSDARG00000012499 320 0.951 - - - - - - - - 0.951 period circadian clock 1b [Source:ZFIN;Acc:ZDB-GENE-040419-1]
72. myo18ab ENSDARG00000061862 124 0.951 - - - - - - - - 0.951 myosin XVIIIAb [Source:ZFIN;Acc:ZDB-GENE-080423-1]
73. CCDC167 ENSDARG00000045850 1024 0.951 - - - - - - - - 0.951 coiled-coil domain containing 167 [Source:ZFIN;Acc:ZDB-GENE-041210-79]
74. pdlim4 ENSDARG00000068973 2567 0.95 - - - - - - - - 0.950 PDZ and LIM domain 4 [Source:ZFIN;Acc:ZDB-GENE-070308-5]
75. CR388047.3 ENSDARG00000117023 89 0.95 - - - - - - - - 0.950
76. ptgs1 ENSDARG00000052148 2443 0.95 - - - - - - - - 0.950 prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
77. tbc1d12a ENSDARG00000038237 698 0.95 - - - - - - - - 0.950 TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
78. CABZ01039859.1 ENSDARG00000076361 540 0.95 - - - - - - - - 0.950 beta-1,4 N-acetylgalactosaminyltransferase 2-like [Source:NCBI gene;Acc:100333855]
79. bhlhe41 ENSDARG00000041691, ENSDARG00000112123, ENSDARG00000114358 302 0.95 - - - - - - - - 0.950 basic helix-loop-helix family, member e41 [Source:ZFIN;Acc:ZDB-GENE-050419-146]
80. cplx3b ENSDARG00000089486 315 0.949 - - - - - - - - 0.949 complexin 3b [Source:ZFIN;Acc:ZDB-GENE-091204-403]
81. ACBD3 ENSDARG00000042623 159 0.949 - - - - - - - - 0.949 acyl-Coenzyme A binding domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1930]
82. prkcbb ENSDARG00000022254 319 0.949 - - - - - - - - 0.949 protein kinase C, beta b [Source:ZFIN;Acc:ZDB-GENE-040426-1178]
83. FAM83H FAM83H 190 0.948 - - - - - - - - 0.948
84. calhm2 ENSDARG00000039482 138 0.948 - - - - - - - - 0.948 calcium homeostasis modulator 2 [Source:ZFIN;Acc:ZDB-GENE-030616-561]
85. nrg1 ENSDARG00000104314 1081 0.947 - - - - - - - - 0.947 neuregulin 1 [Source:ZFIN;Acc:ZDB-GENE-050302-113]
86. C25H12orf4 C25H12orf4 317 0.947 - - - - - - - - 0.947
87. lrp1bb ENSDARG00000061517 172 0.947 - - - - - - - - 0.947 low density lipoprotein receptor-related protein 1Bb [Source:ZFIN;Acc:ZDB-GENE-070912-401]
88. rnf165a ENSDARG00000077906 133 0.947 - - - - - - - - 0.947 ring finger protein 165a [Source:ZFIN;Acc:ZDB-GENE-091118-64]
89. nudt15 ENSDARG00000113961 381 0.946 - - - - - - - - 0.946 nudix (nucleoside diphosphate linked moiety X)-type motif 15 [Source:ZFIN;Acc:ZDB-GENE-040625-95]
90. MAP1S MAP1S 123 0.946 - - - - - - - - 0.946
91. plch1 ENSDARG00000079253 1216 0.946 - - - - - - - - 0.946 phospholipase C, eta 1 [Source:ZFIN;Acc:ZDB-GENE-060503-398]
92. si:ch211-129c21.1 ENSDARG00000024775 371 0.945 - - - - - - - - 0.945 si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
93. si:ch211-195h23.3 ENSDARG00000068431 322 0.945 - - - - - - - - 0.945 si:ch211-195h23.3 [Source:ZFIN;Acc:ZDB-GENE-070912-174]
94. mto1 ENSDARG00000055679 859 0.944 - - - - - - - - 0.944 mitochondrial tRNA translation optimization 1 [Source:ZFIN;Acc:ZDB-GENE-070209-253]
95. erbb3a ENSDARG00000006202 903 0.944 - - - - - - - - 0.944 erb-b2 receptor tyrosine kinase 3a [Source:ZFIN;Acc:ZDB-GENE-030916-3]
96. ttc38 ENSDARG00000042188, ENSDARG00000113493 307 0.944 - - - - - - - - 0.944 tetratricopeptide repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050522-318]
97. chid1 ENSDARG00000069673 675 0.943 - - - - - - - - 0.943 chitinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9169]
98. nfu1 ENSDARG00000068125 1743 0.943 - - - - - - - - 0.943 NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-365]
99. prmt10 prmt10 312 0.943 - - - - - - - - 0.943
100. kti12 ENSDARG00000054301, ENSDARG00000112513, ENSDARG00000114091 382 0.943 - - - - - - - - 0.943 KTI12 chromatin associated homolog [Source:ZFIN;Acc:ZDB-GENE-060825-174]

There are 1369 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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