Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for cdx1a

Gene Name Gene ID Reads Annotation
cdx1a ENSDARG00000114554 28 caudal type homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050510-1]










Genes with expression patterns similar to cdx1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cdx1a ENSDARG00000114554 28 6 - 1.000 1.000 1.000 1.000 - - 1.000 1.000 caudal type homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-050510-1]
2. nyx ENSDARG00000061791 2 2 - - 1.000 1.000 - - - - - nyctalopin [Source:ZFIN;Acc:ZDB-GENE-061026-3]
3. slc5a5 ENSDARG00000005392 6 1.984 - - 0.984 1.000 - - - - - solute carrier family 5 (sodium/iodide cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-060503-585]
4. klhdc8b ENSDARG00000090787 33 1.861 - 0.991 0.870 - - - - - - kelch domain containing 8B [Source:ZFIN;Acc:ZDB-GENE-090313-174]
5. elavl2 ENSDARG00000040732 44 1.803 - 0.991 - - - - - - 0.812 ELAV like neuron-specific RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-040704-9]
6. ddrgk1_1 ENSDARG00000037172 1563 1.78 - 0.977 - - 0.803 - - - - DDRGK domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1050]
7. dnajb9b ENSDARG00000016886 270 1.704 - 0.909 - - 0.795 - - - - DnaJ (Hsp40) homolog, subfamily B, member 9b [Source:ZFIN;Acc:ZDB-GENE-050522-76]
8. ZDHHC12 ZDHHC12 29 1.672 - - 0.700 0.972 - - - - -
9. nhej1 ENSDARG00000058893 172 1.671 - 0.812 - - 0.859 - - - - nonhomologous end-joining factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2515]
10. xrcc5 ENSDARG00000099298 835 1.585 - 0.767 - 0.818 - - - - - X-ray repair complementing defective repair in Chinese hamster cells 5 [Source:ZFIN;Acc:ZDB-GENE-041008-108]
11. golph3l ENSDARG00000036943 568 1.531 - 0.756 - - 0.775 - - - - golgi phosphoprotein 3-like [Source:ZFIN;Acc:ZDB-GENE-051113-168]
12. zgc:92590 ENSDARG00000040282 13 1.528 - - - 0.796 - - - 0.732 - zgc:92590 [Source:ZFIN;Acc:ZDB-GENE-041024-15]
13. rpe65b ENSDARG00000094752, ENSDARG00000113621 463 1.525 - 0.718 - - - - - - 0.807 retinal pigment epithelium-specific protein 65b [Source:ZFIN;Acc:ZDB-GENE-050410-16]
14. gtf3c2 ENSDARG00000004574 153 1.515 - - - - 0.742 - - - 0.773 general transcription factor IIIC, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-041014-349]
15. MARS2 ENSDARG00000009218, ENSDARG00000109472, ENSDARG00000114406 47 1.466 - - - - 0.739 - - - 0.727 methionyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-111201-1]
16. TDRD7B ENSDARG00000077523 124 1.436 - - - 0.724 - - - - 0.712 tudor domain containing 7 b [Source:ZFIN;Acc:ZDB-GENE-150109-14]
17. si:dkey-47k20.6 si:dkey-47k20.6 2 1 - - 1.000 - - - - - -
18. ssh1a ENSDARG00000056780 3 1 - - 1.000 - - - - - - slingshot protein phosphatase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-201]
19. CR318624.1 ENSDARG00000094618 5 1 - - - 1.000 - - - - -
20. si:dkey-4m13.3 6 1 - - - 1.000 - - - - - si:dkey-4m13.3
21. si:dkey-254e13.13 si:dkey-254e13.13 6 1 - - - 1.000 - - - - -
22. CU367845.1_1 CU367845.1_1 43 1 - - - 1.000 - - - - -
23. si:dkeyp-100a5.2 si:dkeyp-100a5.2 1 1 - - 1.000 - - - - - -
24. CABZ01072037.1 CABZ01072037.1 2 1 - - 1.000 - - - - - -
25. ZBED1_3 ZBED1_3 7 1 - - - - 1.000 - - - -
26. ENSDARG00000091313 ENSDARG00000091313 6 1 - - 1.000 - - - - - -
27. si:ch211-278f21.5 si:ch211-278f21.5 1 1 - - - 1.000 - - - - -
28. si:dkey-71h2.4 si:dkey-71h2.4 6 1 - - 1.000 - - - - - -
29. rfc4 ENSDARG00000042458 2 1 - - - 1.000 - - - - - replication factor C (activator 1) 4 [Source:ZFIN;Acc:ZDB-GENE-040824-3]
30. irbp 2 1 - - - 1.000 - - - - - interphotoreceptor retinoid-binding protein, transcript variant X2
31. PGS1 ENSDARG00000075857 5 1 - - - - 1.000 - - - - phosphatidylglycerophosphate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-170216-1]
32. si:ch211-152c8.4 ENSDARG00000101110 6 1 - - 1.000 - - - - - - si:ch211-152c8.4 [Source:ZFIN;Acc:ZDB-GENE-091204-235]
33. si:ch211-128b10.5 si:ch211-128b10.5 3 1 - - - 1.000 - - - - -
34. wnt3a ENSDARG00000058822 5 1 - - 1.000 - - - - - - wingless-type MMTV integration site family, member 3A [Source:ZFIN;Acc:ZDB-GENE-001106-1]
35. slc26a6l ENSDARG00000054127 8 1 - - 1.000 - - - - - - solute carrier family 26, member 6, like [Source:ZFIN;Acc:ZDB-GENE-080220-10]
36. PLB1 PLB1 20 1 - - 1.000 - - - - - -
37. gucy2f ENSDARG00000025504 6 1 - - - 1.000 - - - - - guanylate cyclase 2F, retinal [Source:ZFIN;Acc:ZDB-GENE-011128-7]
38. HRH2 HRH2 3 1 - - 1.000 - - - - - -
39. si:ch211-224l10.5 si:ch211-224l10.5 1 1 - - - 1.000 - - - - -
40. trpc2 trpc2 10 1 - - - 1.000 - - - - -
41. PLCH2 PLCH2 3 1 - - - 1.000 - - - - -
42. si:ch211-276k2.2 4 1 - - - 1.000 - - - - - si:ch211-276k2.2
43. rxfp3.3a3 ENSDARG00000069246 5 1 - - 1.000 - - - - - - relaxin family peptide receptor 3.3a3 [Source:ZFIN;Acc:ZDB-GENE-050419-246]
44. si:ch211-81g2.1 si:ch211-81g2.1 5 1 - - - 1.000 - - - - -
45. AL935186.1 ENSDARG00000025046 6 1 - - - - 1.000 - - - -
46. CT737190.1 ENSDARG00000091514 1 1 - - - 1.000 - - - - - si:dkey-286h2.5 [Source:NCBI gene;Acc:100536662]
47. zgc:193682 zgc:193682 15 1 - - 1.000 - - - - - -
48. si:dkey-121j17.5 ENSDARG00000014232 18 1 - - 1.000 - - - - - - si:dkey-121j17.5 [Source:ZFIN;Acc:ZDB-GENE-030131-4745]
49. CUZD1 CUZD1 2 1 - - - 1.000 - - - - -
50. tacr3a ENSDARG00000075112 1 1 - - - 1.000 - - - - - tachykinin receptor 3a [Source:ZFIN;Acc:ZDB-GENE-090312-106]
51. rtn4rl2b ENSDARG00000037495 11 1 - - 1.000 - - - - - - reticulon 4 receptor-like 2b [Source:ZFIN;Acc:ZDB-GENE-040310-2]
52. si:ch211-281k12.1 si:ch211-281k12.1 1 1 - - 1.000 - - - - - -
53. CRYGM4 ENSDARG00000008219 1 1 - - - 1.000 - - - - - crystallin, gamma M4 [Source:ZFIN;Acc:ZDB-GENE-120312-2]
54. mei4 ENSDARG00000043912 10 1 - - 1.000 - - - - - - meiosis-specific, MEI4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040724-211]
55. BX901974.1 ENSDARG00000067592 2 1 - - - 1.000 - - - - -
56. ms4a17a.1 ENSDARG00000043798 7 1 - - - 1.000 - - - - - membrane-spanning 4-domains, subfamily A, member 17A.1 [Source:ZFIN;Acc:ZDB-GENE-050417-307]
57. aqp8a.2 ENSDARG00000071592, ENSDARG00000113224 7 1 - - - 1.000 - - - - - aquaporin 8a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1802]
58. si:ch211-210m1.3 si:ch211-210m1.3 2 1 - - - 1.000 - - - - -
59. mamdc2b ENSDARG00000073695 26 1 - - 1.000 - - - - - - MAM domain containing 2b [Source:ZFIN;Acc:ZDB-GENE-091117-16]
60. tlr4bb ENSDARG00000022048, ENSDARG00000110914 2 1 - - - 1.000 - - - - - toll-like receptor 4b, duplicate b [Source:ZFIN;Acc:ZDB-GENE-040219-9]
61. kcnf1b ENSDARG00000027285 2 1 - - - 1.000 - - - - - potassium voltage-gated channel, subfamily F, member 1b [Source:ZFIN;Acc:ZDB-GENE-090312-39]
62. TMCC1_1 TMCC1_1 1 1 - - - 1.000 - - - - -
63. si:ch211-160d14.9 8 0.999 - - - - 0.999 - - - - si:ch211-160d14.9, transcript variant X1
64. CEACAM7 CEACAM7 46 0.999 - - - - 0.999 - - - -
65. ttc22 ENSDARG00000077836 21 0.998 - - - - 0.998 - - - - tetratricopeptide repeat domain 22 [Source:ZFIN;Acc:ZDB-GENE-050208-292]
66. wdyhv1 ENSDARG00000070403 42 0.996 - 0.996 - - - - - - - WDYHV motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-848]
67. CABZ01081748.1 ENSDARG00000102139 31 0.996 - - - - 0.996 - - - - gastrula zinc finger protein XlCGF8.2DB-like [Source:NCBI gene;Acc:100007471]
68. BX465841.1 BX465841.1 47 0.996 - - - - 0.996 - - - -
69. si:ch211-260b17.6 32 0.995 - - 0.995 - - - - - - si:ch211-260b17.6
70. KRT18_1 KRT18_1 17 0.994 - - 0.994 - - - - - -
71. GFRAL ENSDARG00000089709 167 0.994 - 0.994 - - - - - - - GDNF family receptor alpha like [Source:ZFIN;Acc:ZDB-GENE-110607-2]
72. si:ch1073-228j22.1 ENSDARG00000095799 98 0.994 - 0.994 - - - - - - - si:ch1073-228j22.1 [Source:ZFIN;Acc:ZDB-GENE-110411-219]
73. si:dkey-233e3.1 si:dkey-233e3.1 7 0.993 - - - 0.993 - - - - -
74. si:ch211-250g4.3 ENSDARG00000092945 150 0.993 - - - - 0.993 - - - - si:ch211-250g4.3 [Source:ZFIN;Acc:ZDB-GENE-060503-506]
75. arf3a ENSDARG00000070539 29 0.993 - - - 0.993 - - - - - ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]
76. il13 ENSDARG00000077809 8 0.993 - - - - 0.993 - - - - interleukin 13 [Source:ZFIN;Acc:ZDB-GENE-100727-2]
77. btbd9 ENSDARG00000068983 356 0.992 - 0.992 - - - - - - - BTB (POZ) domain containing 9 [Source:ZFIN;Acc:ZDB-GENE-040704-39]
78. si:ch211-255g12.8 ENSDARG00000069627 22 0.992 - 0.992 - - - - - - - si:ch211-255g12.8 [Source:ZFIN;Acc:ZDB-GENE-081104-39]
79. gng8 ENSDARG00000042970 117 0.992 - 0.992 - - - - - - - guanine nucleotide binding protein (G protein), gamma 8 [Source:ZFIN;Acc:ZDB-GENE-050522-312]
80. si:ch211-236p5.2 ENSDARG00000086256 8 0.992 - 0.992 - - - - - - - si:ch211-236p5.2 [Source:ZFIN;Acc:ZDB-GENE-081028-33]
81. grip2b ENSDARG00000027618 9 0.991 - 0.991 - - - - - - - glutamate receptor interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-070705-172]
82. TC2N ENSDARG00000095067 146 0.991 - 0.991 - - - - - - - tandem C2 domains, nuclear [Source:HGNC Symbol;Acc:HGNC:19859]
83. dio2 ENSDARG00000094857 17 0.991 - 0.991 - - - - - - - iodothyronine deiodinase 2 [Source:ZFIN;Acc:ZDB-GENE-030327-4]
84. BX004816.4 BX004816.4 33 0.991 - 0.991 - - - - - - -
85. zgc:112234_2 ENSDARG00000099514, ENSDARG00000102806, ENSDARG00000104588, ENSDARG00000105340, ENSDARG00000105393, ENSDARG00000105414, ENSDARG00000105468, ENSDARG00000105483, ENSDARG00000105507, ENSDARG00000111934 33 0.991 - 0.991 - - - - - - - zgc:112234 [Source:NCBI gene;Acc:554097]
86. dpt ENSDARG00000056178 7 0.991 - 0.991 - - - - - - - dermatopontin [Source:ZFIN;Acc:ZDB-GENE-060312-9]
87. slc43a3b ENSDARG00000057949 194 0.991 - 0.991 - - - - - - - solute carrier family 43, member 3b [Source:ZFIN;Acc:ZDB-GENE-060312-28]
88. SNORA53 SNORA53 10 0.991 - 0.991 - - - - - - -
89. GPR97 GPR97 9 0.991 - 0.991 - - - - - - -
90. tmprss13a ENSDARG00000100969 84 0.991 - 0.991 - - - - - - - transmembrane serine protease 13a [Source:ZFIN;Acc:ZDB-GENE-090309-3]
91. zgc:92326 zgc:92326 94 0.991 - 0.991 - - - - - - -
92. tirap ENSDARG00000074371 10 0.991 - 0.991 - - - - - - - toll-interleukin 1 receptor (TIR) domain containing adaptor protein [Source:ZFIN;Acc:ZDB-GENE-040219-4]
93. CU929163.1 CU929163.1 11 0.991 - 0.991 - - - - - - -
94. si:ch211-227e10.1 ENSDARG00000103197, ENSDARG00000104968 6 0.991 - 0.991 - - - - - - - si:ch211-227e10.1 [Source:ZFIN;Acc:ZDB-GENE-050420-221]
95. zgc:112966_1 ENSDARG00000095369, ENSDARG00000099057, ENSDARG00000101612 16 0.991 - 0.991 - - - - - - - zgc:112966 [Source:ZFIN;Acc:ZDB-GENE-050320-137]
96. CABZ01081656.1 CABZ01081656.1 14 0.991 - 0.991 - - - - - - -
97. si:dkey-173l11.3 si:dkey-173l11.3 14 0.991 - 0.991 - - - - - - -
98. si:ch211-284e13.4 ENSDARG00000060330 6 0.991 - 0.991 - - - - - - - si:ch211-284e13.4 [Source:ZFIN;Acc:ZDB-GENE-060526-161]
99. si:dkey-192i18.3 si:dkey-192i18.3 47 0.991 - 0.991 - - - - - - -
100. gpr173 ENSDARG00000042922 238 0.99 - 0.990 - - - - - - - G protein-coupled receptor 173 [Source:ZFIN;Acc:ZDB-GENE-000710-1]

There are 802 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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