Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for cdv3

Gene Name Gene ID Reads Annotation
cdv3 ENSDARG00000023028 12380 carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]










Genes with expression patterns similar to cdv3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cdv3 ENSDARG00000023028 12380 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
2. cdkn1c cdkn1c 17427 3.154 - 0.918 0.727 - - 0.716 0.793 - -
3. ptcd3 ENSDARG00000103856 2107 2.628 - 0.960 0.922 - - - 0.746 - - pentatricopeptide repeat domain 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6849]
4. trim63 trim63 2437 2.614 - 0.984 - - - - 0.840 0.790 -
5. ipo7 ENSDARG00000035751 7095 2.559 0.763 - 0.975 - - - 0.821 - - importin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-458]
6. tbcb ENSDARG00000068404, ENSDARG00000109716 5098 2.517 - 0.810 0.978 - - - - - 0.729 tubulin folding cofactor B [Source:ZFIN;Acc:ZDB-GENE-030131-9296]
7. pebp1 ENSDARG00000042069 6651 2.423 - - - - - 0.782 0.799 0.842 - phosphatidylethanolamine binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2621]
8. rbm8a ENSDARG00000016516 8789 2.394 0.791 - 0.901 - - - 0.702 - - RNA binding motif protein 8A [Source:ZFIN;Acc:ZDB-GENE-050306-51]
9. zgc:66479 ENSDARG00000008732 3347 2.369 0.802 - - - - 0.785 0.782 - - zgc:66479 [Source:ZFIN;Acc:ZDB-GENE-031030-10]
10. si:dkey-42i9.4 ENSDARG00000008049 4752 2.314 0.760 - - - - 0.777 0.777 - - si:dkey-42i9.4 [Source:ZFIN;Acc:ZDB-GENE-030131-8398]
11. mrps24 ENSDARG00000100116 1750 2.288 0.765 - - - - 0.788 0.735 - - mitochondrial ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-050522-393]
12. srsf11 ENSDARG00000098574 12801 2.28 0.847 - - - - - - 0.711 0.722 serine/arginine-rich splicing factor 11 [Source:ZFIN;Acc:ZDB-GENE-030131-605]
13. ube2i ube2i 13024 2.27 0.717 - 0.702 - - - 0.851 - -
14. snrpb ENSDARG00000011125 11729 2.267 0.782 - - - 0.748 - 0.737 - - small nuclear ribonucleoprotein polypeptides B and B1 [Source:ZFIN;Acc:ZDB-GENE-040426-1819]
15. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 2.257 0.776 - - - - 0.758 0.723 - - EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
16. gpx4b ENSDARG00000076836 8085 2.24 0.728 - - - - - 0.706 0.806 - glutathione peroxidase 4b [Source:ZFIN;Acc:ZDB-GENE-030410-3]
17. C19H1orf85 C19H1orf85 1587 1.881 - 0.955 0.926 - - - - - -
18. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.878 - 0.970 - - - - 0.908 - - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
19. ndufa12 ENSDARG00000042469, ENSDARG00000116793 3843 1.876 - 0.940 - - - - 0.936 - - NADH:ubiquinone oxidoreductase subunit A12 [Source:ZFIN;Acc:ZDB-GENE-050828-1]
20. acadvl ENSDARG00000016687 5329 1.871 - 0.964 - - - - 0.907 - - acyl-CoA dehydrogenase very long chain [Source:ZFIN;Acc:ZDB-GENE-030131-899]
21. snoU83B snoU83B 4666 1.863 - 0.987 - - - - 0.876 - -
22. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 1.851 - 0.977 - - - - 0.874 - - proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
23. naa10 ENSDARG00000071060, ENSDARG00000111093, ENSDARG00000116173 4657 1.821 - 0.985 - - - - 0.836 - - N(alpha)-acetyltransferase 10, NatA catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2648]
24. eef1db ENSDARG00000030053 5185 1.813 - 0.962 - - - - 0.851 - - eukaryotic translation elongation factor 1 delta b (guanine nucleotide exchange protein) [Source:ZFIN;Acc:ZDB-GENE-030131-6544]
25. sgcd ENSDARG00000098573 4980 1.804 - 0.969 - - - - 0.835 - - sarcoglycan, delta (dystrophin-associated glycoprotein) [Source:ZFIN;Acc:ZDB-GENE-030131-3684]
26. gars ENSDARG00000059070 17015 1.801 - 0.947 - - - - 0.854 - - glycyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030131-9174]
27. GATAD2B ENSDARG00000005834 3855 1.789 - 0.968 - - - - 0.821 - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
28. flncb ENSDARG00000018820 5595 1.784 - 0.946 - - - - 0.838 - - filamin C, gamma b (actin binding protein 280) [Source:ZFIN;Acc:ZDB-GENE-041008-175]
29. anp32e ENSDARG00000054804 11017 1.778 - - - - - 0.983 0.795 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:ZFIN;Acc:ZDB-GENE-040426-2448]
30. COMP 2018 1.774 - 0.985 - - - - 0.789 - - cartilage oligomeric matrix protein, transcript variant X1
31. bin1 bin1 3199 1.772 - 0.971 - - - - 0.801 - -
32. abcf1 ENSDARG00000031795 8635 1.771 - 0.941 - - - - 0.830 - - ATP-binding cassette, sub-family F (GCN20), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-31]
33. pa2g4b ENSDARG00000070657 7999 1.764 - - 0.870 - - - 0.894 - - proliferation-associated 2G4, b [Source:ZFIN;Acc:ZDB-GENE-030131-2182]
34. sart3 ENSDARG00000008032 2594 1.751 - 0.960 - - - 0.791 - - - squamous cell carcinoma antigen recognized by T cells 3 [Source:ZFIN;Acc:ZDB-GENE-040724-10]
35. snrpd2 ENSDARG00000040440, ENSDARG00000110285 4301 1.747 - 0.972 - - - - 0.775 - - small nuclear ribonucleoprotein D2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-040914-10]
36. slc3a2a ENSDARG00000036427, ENSDARG00000112231 2967 1.744 - 0.956 - - - 0.788 - - - solute carrier family 3 (amino acid transporter heavy chain), member 2a [Source:ZFIN;Acc:ZDB-GENE-000831-3]
37. taf9 ENSDARG00000077870 6992 1.743 - 0.930 - - - - 0.813 - - TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-204]
38. PLEKHA6 ENSDARG00000020328 2076 1.743 - - 0.928 - - - - 0.815 - pleckstrin homology domain containing, family A member 6 [Source:ZFIN;Acc:ZDB-GENE-140106-14]
39. fmr1 ENSDARG00000037433 5132 1.739 - 0.971 - - - - 0.768 - - fragile X mental retardation 1 [Source:ZFIN;Acc:ZDB-GENE-020731-6]
40. eif3i ENSDARG00000017445 21149 1.735 - - 0.822 - - - 0.913 - - eukaryotic translation initiation factor 3, subunit I [Source:ZFIN;Acc:ZDB-GENE-040426-1922]
41. anapc16 ENSDARG00000013822 5857 1.734 - 0.962 - - - - - 0.772 - anaphase promoting complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-050417-430]
42. rtn3_1 ENSDARG00000091348 3290 1.732 - 0.953 - - - - 0.779 - - reticulon 3 [Source:ZFIN;Acc:ZDB-GENE-030710-5]
43. tmx2a ENSDARG00000079122, ENSDARG00000109756 1156 1.728 - 0.969 - - - - 0.759 - - thioredoxin-related transmembrane protein 2a [Source:ZFIN;Acc:ZDB-GENE-050208-95]
44. jph2 ENSDARG00000028625 6706 1.727 - - 0.923 - - - 0.804 - - junctophilin 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9848]
45. atp5o 10343 1.724 0.846 - - - - - 0.878 - - ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit
46. SRGAP3 ENSDARG00000060309 5353 1.723 - 0.922 - - - - - 0.801 - SLIT-ROBO Rho GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-060524-4]
47. rab5if ENSDARG00000074790 8807 1.722 - - - - - - 0.903 0.819 - RAB5 interacting factor [Source:ZFIN;Acc:ZDB-GENE-030131-5938]
48. cct3 ENSDARG00000016173 15869 1.719 - 0.888 - - - - 0.831 - - chaperonin containing TCP1, subunit 3 (gamma) [Source:ZFIN;Acc:ZDB-GENE-020419-5]
49. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.716 0.780 0.936 - - - - - - - splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
50. kifc3 ENSDARG00000054978 1220 1.716 - - 0.925 - - 0.791 - - - kinesin family member C3 [Source:ZFIN;Acc:ZDB-GENE-030131-3724]
51. nmt1a ENSDARG00000052966 5918 1.715 - - 0.911 - - - - 0.804 - N-myristoyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-050522-477]
52. txnipb ENSDARG00000070000 2365 1.714 - - 0.921 - - - 0.793 - - thioredoxin interacting protein b [Source:ZFIN;Acc:ZDB-GENE-040917-1]
53. eaf2 ENSDARG00000010432 3768 1.713 - 0.979 - - - - 0.734 - - ELL associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-040625-179]
54. pdcd10b ENSDARG00000012591 3395 1.71 - 0.937 - - - - - 0.773 - programmed cell death 10b [Source:ZFIN;Acc:ZDB-GENE-040426-2607]
55. eif4e1c ENSDARG00000012274, ENSDARG00000116158 4768 1.71 - 0.938 - - - - 0.772 - - eukaryotic translation initiation factor 4E family member 1c [Source:ZFIN;Acc:ZDB-GENE-050417-398]
56. atoh8 ENSDARG00000037555, ENSDARG00000110248 2059 1.708 - 0.964 - - - - 0.744 - - atonal bHLH transcription factor 8 [Source:ZFIN;Acc:ZDB-GENE-061215-7]
57. cox5ab ENSDARG00000099663 5689 1.707 - 0.955 - - - 0.752 - - - cytochrome c oxidase subunit 5Ab [Source:ZFIN;Acc:ZDB-GENE-030131-5162]
58. pcnp ENSDARG00000037713 2754 1.706 - - - - - - 0.874 0.832 - PEST proteolytic signal containing nuclear protein [Source:ZFIN;Acc:ZDB-GENE-041010-130]
59. C9H2orf15 C9H2orf15 1975 1.704 - 0.978 - - - - 0.726 - -
60. bcl6a ENSDARG00000070864, ENSDARG00000111395, ENSDARG00000112502, ENSDARG00000116260 657 1.703 - 0.960 - - - - 0.743 - - B-cell CLL/lymphoma 6a (zinc finger protein 51) [Source:ZFIN;Acc:ZDB-GENE-040426-1696]
61. SLC6A16_1 SLC6A16_1 1130 1.702 0.740 0.962 - - - - - - -
62. hexim1 ENSDARG00000036482 4317 1.7 - - - - - 0.997 0.703 - - hexamethylene bis-acetamide inducible 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4637]
63. rab11a ENSDARG00000041450, ENSDARG00000109465 7418 1.7 - 0.954 - - - 0.746 - - - RAB11a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-041114-53]
64. cops7a ENSDARG00000022788, ENSDARG00000112421 5302 1.698 - 0.939 - - - - 0.759 - - COP9 constitutive photomorphogenic homolog subunit 7A [Source:ZFIN;Acc:ZDB-GENE-030131-8680]
65. bcar1 ENSDARG00000056525 6563 1.694 - - 0.844 - - - - 0.850 - BCAR1, Cas family scaffold protein [Source:ZFIN;Acc:ZDB-GENE-030131-2774]
66. ube2a ENSDARG00000098466 12765 1.687 - - - - - - 0.850 0.837 - ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:ZFIN;Acc:ZDB-GENE-030616-72]
67. slc6a8 ENSDARG00000043646 1114 1.682 - 0.980 - - - - 0.702 - - solute carrier family 6 (neurotransmitter transporter), member 8 [Source:ZFIN;Acc:ZDB-GENE-071024-2]
68. ppp3r1a ENSDARG00000092659 9729 1.682 0.795 0.887 - - - - - - - protein phosphatase 3, regulatory subunit B, alpha a [Source:ZFIN;Acc:ZDB-GENE-081113-3]
69. psma3 ENSDARG00000086618 6200 1.682 - - 0.900 - - 0.782 - - - proteasome subunit alpha 3 [Source:ZFIN;Acc:ZDB-GENE-050913-120]
70. pygmb ENSDARG00000013317 5454 1.679 0.807 - - - - - 0.872 - - phosphorylase, glycogen, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-1206]
71. emc2 ENSDARG00000003308, ENSDARG00000114541 7141 1.671 - - - - 0.797 - 0.874 - - ER membrane protein complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040625-82]
72. mrps26 ENSDARG00000039719, ENSDARG00000117175 1514 1.67 - 0.967 - - - - 0.703 - - mitochondrial ribosomal protein S26 [Source:ZFIN;Acc:ZDB-GENE-040718-115]
73. cdkn3 ENSDARG00000039130 1051 1.664 - 0.964 - - - - 0.700 - - cyclin-dependent kinase inhibitor 3 [Source:ZFIN;Acc:ZDB-GENE-060427-2]
74. ck2b ck2b 781 1.662 - - 0.926 - - - 0.736 - -
75. chmp4b chmp4b 5318 1.657 - - 0.845 - - - - 0.812 -
76. ccdc47 ENSDARG00000054362 5970 1.656 0.824 - - - - - 0.832 - - coiled-coil domain containing 47 [Source:ZFIN;Acc:ZDB-GENE-040912-15]
77. chmp2bb ENSDARG00000002190 4629 1.654 0.730 0.924 - - - - - - - charged multivesicular body protein 2Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2539]
78. si:ch211-11k18.4 ENSDARG00000087869 3298 1.651 - - 0.849 - - - - 0.802 - si:ch211-11k18.4 [Source:ZFIN;Acc:ZDB-GENE-070912-22]
79. eif3ea ENSDARG00000090697 14670 1.647 - 0.840 - - - - 0.807 - - eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
80. MRPL21 ENSDARG00000003846 3244 1.645 - - 0.919 - - - 0.726 - - mitochondrial ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-061027-183]
81. fxr2 ENSDARG00000016260, ENSDARG00000116730 10030 1.644 - - 0.846 - - - 0.798 - - fragile X mental retardation, autosomal homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-943]
82. atp6v0d1 ENSDARG00000069090, ENSDARG00000115876 4797 1.642 0.722 0.920 - - - - - - - ATPase H+ transporting V0 subunit d1 [Source:ZFIN;Acc:ZDB-GENE-030131-1531]
83. mybphb ENSDARG00000003081 5208 1.642 0.815 - - - - - 0.827 - - myosin binding protein Hb [Source:ZFIN;Acc:ZDB-GENE-030131-9794]
84. fkbp7 ENSDARG00000010962 2986 1.637 - - 0.921 - - - 0.716 - - FK506 binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-030616-182]
85. TACC2 1702 1.637 - - 0.924 - - - 0.713 - - transforming, acidic coiled-coil containing protein 2, transcript variant X17
86. rcn1 ENSDARG00000070006 8455 1.633 - 0.916 - - 0.717 - - - - reticulocalbin 1, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-080225-33]
87. dhx38 ENSDARG00000100013 1854 1.632 - - 0.925 - - - 0.707 - - DEAH (Asp-Glu-Ala-His) box polypeptide 38 [Source:ZFIN;Acc:ZDB-GENE-040426-1144]
88. LRP10 ENSDARG00000054539 1895 1.627 - - - - - 0.792 - 0.835 - low density lipoprotein receptor-related protein 10 [Source:ZFIN;Acc:ZDB-GENE-140418-2]
89. uchl3 ENSDARG00000030177, ENSDARG00000109434 2843 1.625 - - 0.915 - - - 0.710 - - ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase) [Source:ZFIN;Acc:ZDB-GENE-050522-158]
90. rps18 ENSDARG00000100392 64615 1.625 - - 0.739 - - - 0.886 - - ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
91. nudt3a ENSDARG00000016256 2713 1.623 - - - - - 0.785 0.838 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
92. pir ENSDARG00000056638 722 1.623 - - - - - 0.790 - 0.833 - pirin [Source:ZFIN;Acc:ZDB-GENE-040718-288]
93. epn2 ENSDARG00000008377 5458 1.622 0.788 0.834 - - - - - - - epsin 2 [Source:ZFIN;Acc:ZDB-GENE-071212-1]
94. eif2s1b ENSDARG00000052178 11961 1.619 - 0.768 - - - - 0.851 - - eukaryotic translation initiation factor 2, subunit 1 alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-283]
95. fbp2 ENSDARG00000012366 1042 1.616 - - - - - - 0.831 0.785 - fructose-1,6-bisphosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-040822-23]
96. ddx19 ENSDARG00000005699 4602 1.614 - - - - - - 0.882 - 0.732 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-020419-30]
97. ryr1b ENSDARG00000023797 5693 1.606 0.794 - - - - - 0.812 - - ryanodine receptor 1b (skeletal) [Source:ZFIN;Acc:ZDB-GENE-070705-417]
98. msi2b ENSDARG00000032614 3095 1.606 - - - - - - 0.701 0.905 - musashi RNA-binding protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1268]
99. ddx39ab ENSDARG00000015111 11619 1.604 - - - - - - 0.837 - 0.767 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
100. tead3a ENSDARG00000074321 2240 1.602 0.763 - - - - - 0.839 - - TEA domain family member 3 a [Source:ZFIN;Acc:ZDB-GENE-031112-10]

There are 1737 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA