Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for cdh2

Gene Name Gene ID Reads Annotation
cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]










Genes with expression patterns similar to cdh2

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. cdh2 ENSDARG00000018693, ENSDARG00000117201 9869 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
2. hmgb2b ENSDARG00000053990 11519 2.646 0.822 - - - - 0.987 - - 0.837 high mobility group box 2b [Source:ZFIN;Acc:ZDB-GENE-040912-122]
3. srsf3b ENSDARG00000059360 14888 2.57 - - 0.972 - - - 0.836 - 0.762 serine/arginine-rich splicing factor 3b [Source:ZFIN;Acc:ZDB-GENE-071005-2]
4. wdr5 ENSDARG00000016903 4834 2.54 0.825 - - - - 0.972 - - 0.743 WD repeat domain 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2082]
5. parp1 ENSDARG00000019529 6787 2.53 0.775 - - - - 0.967 - - 0.788 poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
6. tmem134 ENSDARG00000024828 3241 2.416 0.710 - - - - 0.960 - - 0.746 transmembrane protein 134 [Source:ZFIN;Acc:ZDB-GENE-040426-1345]
7. sumo3a ENSDARG00000028119 13447 2.413 0.823 - - 0.773 - - - - 0.817 small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
8. marcksl1b ENSDARG00000035715 37390 2.305 0.825 - - 0.704 - - - - 0.776 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
9. CR936437.1 CR936437.1 6465 2.273 0.775 - - 0.739 - - - - 0.759
10. tmpob ENSDARG00000022978 8121 2.255 0.775 - - 0.723 - - - - 0.757 thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
11. baz1b ENSDARG00000102832, ENSDARG00000114866 3543 2.241 - - - 0.722 0.736 - - - 0.783 bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
12. chd7 ENSDARG00000075211 12085 2.146 0.732 - - 0.706 - - - 0.708 - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
13. skp2 ENSDARG00000004937, ENSDARG00000114929 1584 2.122 0.707 - - 0.707 0.708 - - - - S-phase kinase-associated protein 2, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-030219-158]
14. khdrbs1b ENSDARG00000070475 18157 1.845 - - 0.975 - - 0.870 - - - KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
15. wu:fc51f04 wu:fc51f04 7074 1.84 - - - - - 0.987 0.853 - -
16. rasgef1ba ENSDARG00000033614, ENSDARG00000116057 4860 1.808 - - - - - 0.979 0.829 - - RasGEF domain family, member 1Ba [Source:ZFIN;Acc:ZDB-GENE-030131-5783]
17. arhgap1 ENSDARG00000024324 6904 1.792 - - 0.978 - - - - - 0.814 Rho GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-305]
18. hoxa3a ENSDARG00000103862 2239 1.771 0.821 - - - - 0.950 - - - homeobox A3a [Source:ZFIN;Acc:ZDB-GENE-000823-3]
19. sf3a1 ENSDARG00000041887 6702 1.764 - - 0.947 - - - - - 0.817 splicing factor 3a, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030616-156]
20. plagx ENSDARG00000036855 3768 1.763 0.798 - - - - 0.965 - - - pleiomorphic adenoma gene X [Source:ZFIN;Acc:ZDB-GENE-030131-839]
21. hnrpdl 14288 1.763 - - - - - 0.886 0.877 - - heterogeneous nuclear ribonucleoprotein D-like, transcript variant X2
22. eif4ebp1 ENSDARG00000043608, ENSDARG00000113927 9982 1.762 - - 0.973 - - - 0.789 - - eukaryotic translation initiation factor 4E binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2332]
23. zgc:92107 ENSDARG00000044874, ENSDARG00000115497 5938 1.761 0.829 - - - - - 0.932 - - zgc:92107 [Source:ZFIN;Acc:ZDB-GENE-041114-4]
24. erh ENSDARG00000032866 20633 1.758 - - 0.949 - - - 0.809 - - enhancer of rudimentary homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-990415-57]
25. mrpl12 ENSDARG00000038768 5539 1.753 - - 0.975 - - - 0.778 - - mitochondrial ribosomal protein L12 [Source:ZFIN;Acc:ZDB-GENE-050417-187]
26. cdc42 ENSDARG00000044573 11795 1.743 - - - - - 0.949 0.794 - - cell division cycle 42 [Source:ZFIN;Acc:ZDB-GENE-030131-8783]
27. tmem35 ENSDARG00000052567 5685 1.742 0.922 - - - - - - - 0.820 transmembrane protein 35 [Source:ZFIN;Acc:ZDB-GENE-030815-1]
28. ik ENSDARG00000004161 3132 1.739 - - 0.977 - - - 0.762 - - IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
29. PSIP1 PSIP1 5252 1.736 0.769 - - - - 0.967 - - -
30. akr1b1 ENSDARG00000006215 2511 1.731 0.760 - - - - 0.971 - - - aldo-keto reductase family 1, member B1 (aldose reductase) [Source:ZFIN;Acc:ZDB-GENE-040625-7]
31. ube2e1 ENSDARG00000116649 10656 1.731 - - 0.977 - - - 0.754 - - ubiquitin-conjugating enzyme E2E 1 [Source:ZFIN;Acc:ZDB-GENE-071004-16]
32. dnajb12b ENSDARG00000087473 3811 1.731 - - - - - 0.954 - - 0.777 DnaJ (Hsp40) homolog, subfamily B, member 12b [Source:ZFIN;Acc:ZDB-GENE-070410-128]
33. snrpc ENSDARG00000009871 9567 1.724 - - - - - 0.944 - - 0.780 small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
34. npm1a ENSDARG00000014329, ENSDARG00000113199 31910 1.72 - 0.869 - - - - - - 0.851 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
35. FAR2 FAR2 1459 1.72 - - - - - 0.955 0.765 - -
36. srsf1a ENSDARG00000057691, ENSDARG00000111226 15525 1.719 - 0.947 - - - - - - 0.772 serine/arginine-rich splicing factor 1a [Source:ZFIN;Acc:ZDB-GENE-040426-1950]
37. safb ENSDARG00000020467 5608 1.708 - - - - - - 0.864 - 0.844 scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
38. psmb4 ENSDARG00000054696 8100 1.705 - 0.731 - - - 0.974 - - - proteasome subunit beta 4 [Source:ZFIN;Acc:ZDB-GENE-050417-333]
39. pes ENSDARG00000018902 3286 1.7 - - - - - 0.951 0.749 - - pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
40. sf3b4 ENSDARG00000018574 7470 1.696 - - - - 0.737 0.959 - - - splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]
41. parn ENSDARG00000102634 2049 1.691 - - - - - 0.965 - - 0.726 poly(A)-specific ribonuclease (deadenylation nuclease) [Source:ZFIN;Acc:ZDB-GENE-040426-880]
42. rpl31 ENSDARG00000053365 55475 1.688 - 0.882 - - - - 0.806 - - ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
43. tcf7l1a ENSDARG00000038159 2288 1.685 - - - - - 0.957 - - 0.728 transcription factor 7 like 1a [Source:ZFIN;Acc:ZDB-GENE-980605-30]
44. copb1 ENSDARG00000056557, ENSDARG00000116045 7395 1.684 - - - - - 0.945 0.739 - - coatomer protein complex, subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030219-38]
45. nr2f1a ENSDARG00000052695 5037 1.683 0.874 - - - - - - - 0.809 nuclear receptor subfamily 2, group F, member 1a [Source:ZFIN;Acc:ZDB-GENE-980526-115]
46. chd4b ENSDARG00000025789 14299 1.68 0.737 - - - - - 0.943 - - chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
47. jak1 ENSDARG00000020625, ENSDARG00000117102 5057 1.679 - - - - - 0.910 0.769 - - Janus kinase 1 [Source:ZFIN;Acc:ZDB-GENE-980526-142]
48. yap1 ENSDARG00000068401, ENSDARG00000112952 16365 1.677 - - 0.976 - - - 0.701 - - Yes-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9710]
49. hmga2 ENSDARG00000069912 20402 1.677 - - 0.965 - - - - - 0.712 high mobility group AT-hook 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3148]
50. rbfox2 ENSDARG00000052182 6621 1.676 0.717 - - - - 0.959 - - - RNA binding fox-1 homolog 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2464]
51. rtca ENSDARG00000002215 3558 1.671 - - - 0.847 - - - - 0.824 RNA 3'-terminal phosphate cyclase [Source:ZFIN;Acc:ZDB-GENE-030131-9687]
52. lfng ENSDARG00000037879 11783 1.668 0.870 - - - - - - - 0.798 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:ZFIN;Acc:ZDB-GENE-980605-16]
53. SNRPG ENSDARG00000099667 18697 1.662 - - - 0.808 - - - - 0.854 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
54. zgc:123194 zgc:123194 69174 1.659 0.852 - 0.807 - - - - - -
55. VPS37C ENSDARG00000031836 906 1.656 - - - - - 0.952 0.704 - - vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061110-126]
56. ppm1g ENSDARG00000075559 6516 1.653 0.763 - - - - - 0.890 - - protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
57. clic4 ENSDARG00000022995 6064 1.653 - - - 0.748 - - 0.905 - - chloride intracellular channel 4 [Source:ZFIN;Acc:ZDB-GENE-030326-3]
58. lsm7 ENSDARG00000058328 7191 1.645 - - - - - - 0.851 - 0.794 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:ZFIN;Acc:ZDB-GENE-030131-8284]
59. drap1 ENSDARG00000041203 6749 1.644 - - - - 0.755 - 0.889 - - DR1-associated protein 1 (negative cofactor 2 alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-400]
60. ELOVL4 ELOVL4 3026 1.639 0.882 - - - - - - - 0.757
61. sox3 ENSDARG00000053569 12016 1.634 0.827 - - - - - 0.807 - - SRY (sex determining region Y)-box 3 [Source:ZFIN;Acc:ZDB-GENE-980526-333]
62. cyfip2 ENSDARG00000036375, ENSDARG00000110155, ENSDARG00000114426 2788 1.633 0.815 - - - - - - - 0.818 cytoplasmic FMR1 interacting protein 2 [Source:ZFIN;Acc:ZDB-GENE-080724-2]
63. ywhaqb ENSDARG00000023323 28138 1.629 - 0.879 - - - - - 0.750 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide b [Source:ZFIN;Acc:ZDB-GENE-030131-7135]
64. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 1.627 0.830 - - - - - 0.797 - - brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
65. dld ENSDARG00000020219 4928 1.626 0.822 - - - - - - - 0.804 deltaD [Source:ZFIN;Acc:ZDB-GENE-990415-47]
66. hnrnpub ENSDARG00000004735 16496 1.626 0.795 - - - - - - - 0.831 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
67. gap43 ENSDARG00000099744 4114 1.62 0.819 - - - - - - - 0.801 growth associated protein 43 [Source:ZFIN;Acc:ZDB-GENE-990415-87]
68. u2af1 ENSDARG00000015325 3217 1.619 0.800 - - - - - - - 0.819 U2 small nuclear RNA auxiliary factor 1 [Source:ZFIN;Acc:ZDB-GENE-020419-1]
69. hoxc3a ENSDARG00000070339 3379 1.617 0.764 - - - - - 0.853 - - homeobox C3a [Source:ZFIN;Acc:ZDB-GENE-980526-532]
70. stmn1a ENSDARG00000004169 21169 1.615 0.843 - - - - - - - 0.772 stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
71. sfpq ENSDARG00000011564, ENSDARG00000115611 15626 1.614 - - - 0.739 - - - - 0.875 splicing factor proline/glutamine-rich [Source:ZFIN;Acc:ZDB-GENE-040426-2452]
72. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 1.614 - - - - - - 0.829 - 0.785 serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
73. lrrn1 ENSDARG00000060115, ENSDARG00000115960 5175 1.611 0.796 - - - - - - - 0.815 leucine rich repeat neuronal 1 [Source:ZFIN;Acc:ZDB-GENE-071126-1]
74. nrarpb ENSDARG00000018958 6225 1.607 0.739 - - - - - - - 0.868 NOTCH regulated ankyrin repeat protein b [Source:ZFIN;Acc:ZDB-GENE-030515-7]
75. tuba8l3 ENSDARG00000070155 7525 1.604 0.765 - - - - - 0.839 - - tubulin, alpha 8 like 3 [Source:ZFIN;Acc:ZDB-GENE-040801-77]
76. psmc4 ENSDARG00000027099, ENSDARG00000109415 6643 1.604 0.710 0.894 - - - - - - - proteasome 26S subunit, ATPase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-5083]
77. hdac1 ENSDARG00000015427 19804 1.601 0.808 - - - - - - - 0.793 histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
78. psat1 ENSDARG00000016733 8084 1.599 0.805 - - 0.794 - - - - - phosphoserine aminotransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-5723]
79. whsc1l1 8544 1.598 0.819 - - - - - - - 0.779 Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X2
80. vamp2 ENSDARG00000056877 2158 1.596 0.840 - - - - - - - 0.756 vesicle-associated membrane protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8225]
81. khdrbs1a ENSDARG00000052856 53666 1.595 0.858 - - - - 0.737 - - - KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
82. TAF15 ENSDARG00000070019 5102 1.595 - - - - - - - 0.721 0.874 TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
83. AGO1 ENSDARG00000092644 4521 1.594 0.887 - - - - - - - 0.707 argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
84. hmgb3a ENSDARG00000056725 15668 1.593 0.865 - - - - - - - 0.728 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
85. dpysl5a ENSDARG00000011141 1827 1.591 0.816 - - - - - - - 0.775 dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
86. tuba1c ENSDARG00000055216 8384 1.589 0.857 - - - - - - - 0.732 tubulin, alpha 1c [Source:ZFIN;Acc:ZDB-GENE-061114-1]
87. cldn5a ENSDARG00000043716 3865 1.589 0.866 - - - 0.723 - - - - claudin 5a [Source:ZFIN;Acc:ZDB-GENE-040426-2442]
88. epha4b ENSDARG00000011600 3110 1.583 0.824 - - - - - - - 0.759 eph receptor A4b [Source:ZFIN;Acc:ZDB-GENE-030826-6]
89. dla ENSDARG00000010791 9281 1.574 0.817 - - - - - - - 0.757 deltaA [Source:ZFIN;Acc:ZDB-GENE-980526-29]
90. scube2 ENSDARG00000037362 2833 1.574 0.843 - - 0.731 - - - - - signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
91. CABZ01081490.1 ENSDARG00000111653 11892 1.574 - 0.734 - - - - 0.840 - -
92. uhrf1 ENSDARG00000103409 3282 1.571 0.776 - - - - - 0.795 - - ubiquitin-like with PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2039]
93. srsf5b ENSDARG00000027734 6996 1.57 - - - - 0.708 - 0.862 - - serine/arginine-rich splicing factor 5b [Source:ZFIN;Acc:ZDB-GENE-040718-354]
94. mapta ENSDARG00000089314 2038 1.564 0.770 - - - - - 0.794 - - microtubule-associated protein tau a [Source:ZFIN;Acc:ZDB-GENE-081027-1]
95. wu:fk48d07 wu:fk48d07 13245 1.564 0.759 - - - - - - - 0.805
96. dnaja2l ENSDARG00000010745 2367 1.56 0.787 - - - - - - - 0.773 DnaJ (Hsp40) homolog, subfamily A, member 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-2884]
97. kpnb1 ENSDARG00000104889 9282 1.56 - - - 0.735 - - - - 0.825 karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
98. atp6v0cb ENSDARG00000036577 3472 1.559 0.764 - - - - - - - 0.795 ATPase H+ transporting V0 subunit cb [Source:ZFIN;Acc:ZDB-GENE-030131-4127]
99. kmt2a ENSDARG00000004537 2169 1.558 - - - - - - 0.791 - 0.767 lysine (K)-specific methyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080521-3]
100. clvs2 ENSDARG00000053122 1390 1.556 0.814 - - - - - - - 0.742 clavesin 2 [Source:ZFIN;Acc:ZDB-GENE-041014-313]

There are 1463 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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