Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for ccs

Gene Name Gene ID Reads Annotation
ccs ENSDARG00000092003, ENSDARG00000116246 227 copper chaperone for superoxide dismutase [Source:ZFIN;Acc:ZDB-GENE-050417-322]










Genes with expression patterns similar to ccs

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. ccs ENSDARG00000092003, ENSDARG00000116246 227 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 copper chaperone for superoxide dismutase [Source:ZFIN;Acc:ZDB-GENE-050417-322]
2. usf1 ENSDARG00000041689 1619 1.52 - 0.730 - - - - 0.790 - - upstream transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1072]
3. si:dkey-163m14.2 274 1.497 - - - - 0.787 - 0.710 - - si:dkey-163m14.2
4. emp1 ENSDARG00000069632 251 1.485 - 0.735 - - 0.750 - - - - epithelial membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-070822-2]
5. si:ch211-155e24.3 ENSDARG00000105127 972 1.477 - - - - - 0.715 0.762 - - si:ch211-155e24.3 [Source:ZFIN;Acc:ZDB-GENE-070912-116]
6. chsy1 ENSDARG00000079027 455 1.474 - 0.749 - - - - 0.725 - - chondroitin sulfate synthase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3127]
7. arhgap27 ENSDARG00000104255 439 1.469 - 0.728 - - - - 0.741 - - Rho GTPase activating protein 27 [Source:ZFIN;Acc:ZDB-GENE-030131-3922]
8. zgc:112083 ENSDARG00000037405 306 1.449 - 0.717 - - - - 0.732 - - zgc:112083 [Source:ZFIN;Acc:ZDB-GENE-050417-284]
9. rab11fip4a ENSDARG00000090170 839 1.449 - 0.738 - - - - 0.711 - - RAB11 family interacting protein 4 (class II) a [Source:ZFIN;Acc:ZDB-GENE-040718-266]
10. NANS NANS 270 1.436 - 0.715 - - - - 0.721 - -
11. CABZ01083862.1 ENSDARG00000106989 779 0.971 - 0.971 - - - - - - - zinc finger protein 821 [Source:NCBI gene;Acc:571740]
12. SMPD2 SMPD2 197 0.945 - 0.945 - - - - - - -
13. rabl3 ENSDARG00000040959 271 0.941 - - - - - - 0.941 - - RAB, member of RAS oncogene family-like 3 [Source:ZFIN;Acc:ZDB-GENE-040808-11]
14. prdm16 prdm16 1346 0.922 - - - - - 0.922 - - -
15. CARD11 ENSDARG00000052741 249 0.92 - - - - - - 0.920 - - caspase recruitment domain family, member 11 [Source:ZFIN;Acc:ZDB-GENE-100219-1]
16. RPTOR ENSDARG00000098726, ENSDARG00000116019 420 0.912 - - - - - - 0.912 - - regulatory associated protein of MTOR, complex 1 [Source:ZFIN;Acc:ZDB-GENE-130530-685]
17. tmem204 ENSDARG00000045273 42 0.908 - - - - - - 0.908 - - transmembrane protein 204 [Source:ZFIN;Acc:ZDB-GENE-040724-12]
18. ATP6AP1L_1 ATP6AP1L_1 508 0.903 - - - - - - 0.903 - -
19. rab9a ENSDARG00000045027 201 0.902 - - - - - - 0.902 - - RAB9A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-060825-293]
20. ryroxd1 227 0.9 - - - - - - 0.900 - - pyridine nucleotide-disulphide oxidoreductase domain 1, transcript variant X1
21. smarcc1b ENSDARG00000098919 770 0.899 - - - - - - 0.899 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1b [Source:ZFIN;Acc:ZDB-GENE-060503-273]
22. itih5 ENSDARG00000045517 374 0.889 - - - - - - 0.889 - - inter-alpha-trypsin inhibitor heavy chain family, member 5 [Source:ZFIN;Acc:ZDB-GENE-041210-193]
23. zfyve27 ENSDARG00000059835 604 0.889 - - - - - - 0.889 - - zinc finger, FYVE domain containing 27 [Source:ZFIN;Acc:ZDB-GENE-061013-502]
24. tmem110 497 0.886 - - - - - - 0.886 - - transmembrane protein 110
25. phactr2 ENSDARG00000027172 306 0.883 - - - - - - 0.883 - - phosphatase and actin regulator 2 [Source:ZFIN;Acc:ZDB-GENE-040724-11]
26. pdxdc1 ENSDARG00000101886 1958 0.88 - - - - - - 0.880 - - pyridoxal-dependent decarboxylase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040912-16]
27. stk16 ENSDARG00000037777 255 0.879 - - - - - - 0.879 - - serine/threonine kinase 16 [Source:ZFIN;Acc:ZDB-GENE-050417-102]
28. fbxo44 ENSDARG00000022623, ENSDARG00000114432 406 0.879 - - - - - - 0.879 - - F-box protein 44 [Source:ZFIN;Acc:ZDB-GENE-041212-85]
29. ANKS3 ENSDARG00000038557 235 0.878 - - - - - - 0.878 - - ankyrin repeat and sterile alpha motif domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-080204-51]
30. gak ENSDARG00000090654 695 0.876 - 0.876 - - - - - - - cyclin G associated kinase [Source:ZFIN;Acc:ZDB-GENE-041210-358]
31. C21HXorf40A C21HXorf40A 216 0.874 - - - - - - 0.874 - -
32. spint1b ENSDARG00000012467 97 0.873 - - - - - - 0.873 - - serine peptidase inhibitor, Kunitz type 1 b [Source:ZFIN;Acc:ZDB-GENE-071218-1]
33. mier1b ENSDARG00000001447 1680 0.869 - - - - - - 0.869 - - mesoderm induction early response 1b, transcriptional regulator [Source:ZFIN;Acc:ZDB-GENE-070705-170]
34. tgfbrap1 ENSDARG00000061508 504 0.866 - 0.866 - - - - - - - transforming growth factor, beta receptor associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070410-66]
35. scamp3 ENSDARG00000016765 540 0.866 - - - - - - 0.866 - - secretory carrier membrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-041114-33]
36. cmasb 499 0.864 - - - - - - 0.864 - - cytidine monophosphate N-acetylneuraminic acid synthetase b
37. trim33l ENSDARG00000086126 241 0.863 - 0.863 - - - - - - - tripartite motif containing 33, like [Source:ZFIN;Acc:ZDB-GENE-030131-5695]
38. grk4_1 ENSDARG00000070448 511 0.858 - - - - - - 0.858 - - G protein-coupled receptor kinase 4 [Source:ZFIN;Acc:ZDB-GENE-060929-1198]
39. cryzl1 ENSDARG00000026902 401 0.858 - - - - - - 0.858 - - crystallin, zeta (quinone reductase)-like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-378]
40. yaf2 ENSDARG00000015966 1905 0.858 - - - - - - 0.858 - - YY1 associated factor 2 [Source:ZFIN;Acc:ZDB-GENE-041210-115]
41. itpk1 itpk1 425 0.858 - - - - - - 0.858 - -
42. stmn4l ENSDARG00000043932 654 0.858 - 0.858 - - - - - - - stathmin-like 4, like [Source:ZFIN;Acc:ZDB-GENE-040718-301]
43. qrich1 ENSDARG00000019797, ENSDARG00000111720, ENSDARG00000113429 1177 0.855 - - - - - - 0.855 - - glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
44. irf2a ENSDARG00000007387 915 0.855 - - - - - - 0.855 - - interferon regulatory factor 2a [Source:ZFIN;Acc:ZDB-GENE-030131-4135]
45. roraa ENSDARG00000031768 278 0.853 - - - - - 0.853 - - - RAR-related orphan receptor A, paralog a [Source:ZFIN;Acc:ZDB-GENE-060306-2]
46. APLF APLF 691 0.852 - 0.852 - - - - - - -
47. GANAB_2 GANAB_2 3210 0.851 - - - - - - 0.851 - -
48. zgc:110434_1 30 0.849 - - - - - - 0.849 - - zgc:110434
49. srpx2 ENSDARG00000034559 452 0.847 - - - - - - 0.847 - - sushi-repeat containing protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-110411-231]
50. nsmaf ENSDARG00000051920 474 0.846 - - - - - - 0.846 - - neutral sphingomyelinase (N-SMase) activation associated factor [Source:ZFIN;Acc:ZDB-GENE-050417-342]
51. kctd2 ENSDARG00000025875, ENSDARG00000114216 802 0.845 - - - - - - 0.845 - - potassium channel tetramerization domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060825-85]
52. cdadc1 ENSDARG00000036650 16 0.843 - - - - - - 0.843 - - cytidine and dCMP deaminase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-163]
53. SLC44A2 ENSDARG00000037059 88 0.842 - - - - - - 0.842 - - solute carrier family 44 (choline transporter), member 2 [Source:ZFIN;Acc:ZDB-GENE-030131-3065]
54. zgc:111974 zgc:111974 1386 0.842 - - - - - - 0.842 - -
55. rxrbb ENSDARG00000002006, ENSDARG00000117079 1975 0.842 - - - - - - 0.842 - - retinoid x receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-990415-242]
56. cx44.2 ENSDARG00000034207, ENSDARG00000113651 431 0.84 - - - - - - 0.840 - - connexin 44.2 [Source:ZFIN;Acc:ZDB-GENE-010619-1]
57. ELMSAN1_1 ELMSAN1_1 1337 0.84 - - - - - - 0.840 - -
58. CU655970.1 CU655970.1 2123 0.84 - - - - - - 0.840 - -
59. tfap4 ENSDARG00000103923 2203 0.84 - - - - - 0.840 - - - transcription factor AP-4 (activating enhancer binding protein 4) [Source:ZFIN;Acc:ZDB-GENE-090810-1]
60. ccdc85cb ENSDARG00000079555 63 0.839 - - - - - - 0.839 - - coiled-coil domain containing 85C, b [Source:ZFIN;Acc:ZDB-GENE-040718-373]
61. CABZ01048373.1 CABZ01048373.1 81 0.838 - - - - - - 0.838 - -
62. ca8 ENSDARG00000039098 401 0.837 - - - - - - 0.837 - - carbonic anhydrase VIII [Source:ZFIN;Acc:ZDB-GENE-050417-26]
63. nckipsd ENSDARG00000079475 777 0.836 - - - - - 0.836 - - - NCK interacting protein with SH3 domain [Source:ZFIN;Acc:ZDB-GENE-130326-2]
64. icmt ENSDARG00000020241, ENSDARG00000110063 598 0.835 - - - - - - 0.835 - - isoprenylcysteine carboxyl methyltransferase [Source:ZFIN;Acc:ZDB-GENE-050417-90]
65. ajuba ENSDARG00000077842 1152 0.835 - - - - - - 0.835 - - ajuba LIM protein [Source:ZFIN;Acc:ZDB-GENE-030131-9341]
66. rusc2 ENSDARG00000095288 649 0.835 - - - - - - 0.835 - - RUN and SH3 domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-060526-131]
67. ctnnd2a ENSDARG00000062415, ENSDARG00000111725 262 0.834 - 0.834 - - - - - - - catenin (cadherin-associated protein), delta 2a [Source:ZFIN;Acc:ZDB-GENE-030616-60]
68. cdk13 ENSDARG00000076791 828 0.832 - - - - - - 0.832 - - cyclin-dependent kinase 13 [Source:ZFIN;Acc:ZDB-GENE-030131-4975]
69. si:dkeyp-86h10.3 ENSDARG00000095615 253 0.831 - - - - - - 0.831 - - si:dkeyp-86h10.3 [Source:ZFIN;Acc:ZDB-GENE-100922-65]
70. zgc:174906 ENSDARG00000075314 2187 0.83 - - - - - 0.830 - - - zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
71. U3 U3 287 0.829 - - - - - - 0.829 - -
72. riok1 ENSDARG00000016399 936 0.829 - - - - - - 0.829 - - RIO kinase 1 (yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-1927]
73. TTBK1 TTBK1 120 0.829 - - - - - - 0.829 - -
74. zwilch ENSDARG00000057100 408 0.829 - - - - - - 0.829 - - zwilch kinetochore protein [Source:ZFIN;Acc:ZDB-GENE-050420-101]
75. mtm1 ENSDARG00000037560 1086 0.829 - - - - - - 0.829 - - myotubularin 1 [Source:ZFIN;Acc:ZDB-GENE-051113-128]
76. CT030012.1 ENSDARG00000105611 154 0.829 - - - - - - 0.829 - -
77. zgc:136439 ENSDARG00000009267 720 0.828 - - - - - - 0.828 - - zgc:136439 [Source:ZFIN;Acc:ZDB-GENE-060421-2858]
78. tmem68 ENSDARG00000086737 209 0.828 - - - - - - 0.828 - - transmembrane protein 68 [Source:ZFIN;Acc:ZDB-GENE-040426-1267]
79. tnfaip6 ENSDARG00000093440, ENSDARG00000111060 91 0.827 - - - - - - 0.827 - - tumor necrosis factor, alpha-induced protein 6 [Source:ZFIN;Acc:ZDB-GENE-060421-2654]
80. eif4enif1 ENSDARG00000016177 238 0.827 - - - - - - 0.827 - - eukaryotic translation initiation factor 4E nuclear import factor 1 [Source:ZFIN;Acc:ZDB-GENE-050320-113]
81. si:ch211-113a14.12 ENSDARG00000077456 1004 0.827 - - - - - - 0.827 - - si:ch211-113a14.12 [Source:ZFIN;Acc:ZDB-GENE-121214-99]
82. phf17 phf17 790 0.826 - - - - - - 0.826 - -
83. si:ch211-117l17.4 ENSDARG00000103534 24 0.825 - - - - - - 0.825 - - si:ch211-117l17.4 [Source:ZFIN;Acc:ZDB-GENE-110913-102]
84. SAYSD1 SAYSD1 149 0.825 - - - - - - 0.825 - -
85. si:rp71-3c13.3 si:rp71-3c13.3 128 0.825 - - - - - - 0.825 - -
86. si:dkey-16n15.3 223 0.825 - - - - - - 0.825 - - si:dkey-16n15.3
87. fntb ENSDARG00000027916 736 0.825 - - - - - - 0.825 - - farnesyltransferase, CAAX box, beta [Source:ZFIN;Acc:ZDB-GENE-030131-2220]
88. extl2 ENSDARG00000063191 118 0.825 - - - - - - 0.825 - - exostosin-like glycosyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-060929-1122]
89. tmem127 ENSDARG00000030981 1389 0.824 - - - - - - 0.824 - - transmembrane protein 127 [Source:ZFIN;Acc:ZDB-GENE-050522-97]
90. CABZ01005649.2 CABZ01005649.2 715 0.824 - 0.824 - - - - - - -
91. zgc:136254 ENSDARG00000068465 27 0.822 - - - - - - 0.822 - - zgc:136254 [Source:ZFIN;Acc:ZDB-GENE-060421-3062]
92. ttr ENSDARG00000037191 11 0.822 - - - - - - 0.822 - - transthyretin (prealbumin, amyloidosis type I) [Source:ZFIN;Acc:ZDB-GENE-040927-14]
93. si:busm1-180g5.7 si:busm1-180g5.7 15 0.822 - - - - - - 0.822 - -
94. VWA5A_1 VWA5A_1 6 0.822 - - - - - - 0.822 - -
95. BICD2_1 BICD2_1 18 0.822 - - - - - - 0.822 - -
96. guca1c ENSDARG00000030758 9 0.822 - - - - - - 0.822 - - guanylate cyclase activator 1C [Source:ZFIN;Acc:ZDB-GENE-030829-1]
97. CU681846.1 CU681846.1 86 0.822 - - - - - - 0.822 - -
98. si:dkey-177p2.15p si:dkey-177p2.15p 20 0.822 - - - - - - 0.822 - -
99. ctgfb ENSDARG00000104292 69 0.822 - - - - - - 0.822 - - connective tissue growth factor b [Source:ZFIN;Acc:ZDB-GENE-070705-82]
100. MPPED1 ENSDARG00000088181 117 0.822 - - - - - - 0.822 - - metallophosphoesterase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-111104-1]

There are 651 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA