Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for caprin1a

Gene Name Gene ID Reads Annotation
caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]










Genes with expression patterns similar to caprin1a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
2. ANKRD11 ENSDARG00000051886 10024 3.904 0.779 0.705 0.802 0.875 - 0.743 - - - ankyrin repeat domain 11 [Source:ZFIN;Acc:ZDB-GENE-030131-3932]
3. hdac1 ENSDARG00000015427 19804 3.361 - - 0.821 0.888 - 0.809 - 0.843 - histone deacetylase 1 [Source:ZFIN;Acc:ZDB-GENE-020419-32]
4. elof1 ENSDARG00000099453 6176 3.316 0.788 - 0.783 - - 0.749 - - 0.996 ELF1 homolog, elongation factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1385]
5. tgif1 ENSDARG00000059337 4020 3.269 - 0.863 0.830 - 0.772 - - 0.804 - TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
6. smc1al ENSDARG00000058203 8838 3.248 0.702 - 0.854 - 0.921 0.771 - - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
7. hmgb1b ENSDARG00000030479 10398 3.226 0.727 - 0.851 - - 0.832 - 0.816 - high mobility group box 1b [Source:ZFIN;Acc:ZDB-GENE-030131-8480]
8. elavl1 11672 3.129 - - 0.733 - 0.778 0.806 - 0.812 - ELAV like RNA binding protein 1, transcript variant X3
9. kmt2a ENSDARG00000004537 2169 3.079 0.724 0.822 0.704 - - 0.829 - - - lysine (K)-specific methyltransferase 2A [Source:ZFIN;Acc:ZDB-GENE-080521-3]
10. snrnp70 ENSDARG00000077126 5921 3.076 - 0.724 0.744 - 0.876 0.732 - - - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
11. stmn1a ENSDARG00000004169 21169 3.022 0.729 0.726 0.718 - 0.849 - - - - stathmin 1a [Source:ZFIN;Acc:ZDB-GENE-031006-14]
12. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 2.638 - - - - - 0.791 - 0.851 0.996 brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
13. zc4h2 ENSDARG00000015314, ENSDARG00000112180 5141 2.611 - - 0.748 0.953 - 0.910 - - - zinc finger, C4H2 domain containing [Source:ZFIN;Acc:ZDB-GENE-030131-2207]
14. ptprsa ENSDARG00000059738, ENSDARG00000110940 7232 2.611 - - - - 0.857 0.754 1.000 - - protein tyrosine phosphatase, receptor type, s, a [Source:ZFIN;Acc:ZDB-GENE-020107-3]
15. nusap1 ENSDARG00000002403 6953 2.59 - - - 0.966 - 0.899 - 0.725 - nucleolar and spindle associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030827-5]
16. zgc:77262 ENSDARG00000044545 5563 2.537 - - 0.739 - - - - 0.802 0.996 zgc:77262 [Source:ZFIN;Acc:ZDB-GENE-040426-1811]
17. sepw2a 8597 2.507 0.752 - - 0.955 - 0.800 - - - selenoprotein W, 2a
18. wdr82 ENSDARG00000014083 3159 2.495 - 0.788 - - - 0.711 - - 0.996 WD repeat domain 82 [Source:ZFIN;Acc:ZDB-GENE-030131-333]
19. hmgb3a ENSDARG00000056725 15668 2.49 0.802 - - 0.830 - 0.858 - - - high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
20. bmpr2a ENSDARG00000011941 2972 2.487 - 0.804 - 0.940 - 0.743 - - - bone morphogenetic protein receptor, type II a (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-070618-1]
21. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.468 - 0.713 - - 0.851 0.904 - - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
22. ISM2 ISM2 1710 2.443 - 0.722 - - - 0.729 - - 0.992
23. CR936437.1 CR936437.1 6465 2.43 0.744 - 0.816 - - - - 0.870 -
24. ube2e1 ENSDARG00000116649 10656 2.427 - 0.858 - - 0.755 0.814 - - - ubiquitin-conjugating enzyme E2E 1 [Source:ZFIN;Acc:ZDB-GENE-071004-16]
25. CABZ01070258.1 ENSDARG00000105687 3643 2.419 0.728 - 0.731 0.960 - - - - -
26. hoxa5a ENSDARG00000102501 1667 2.415 0.718 - - - - 0.746 - - 0.951 homeobox A5a [Source:ZFIN;Acc:ZDB-GENE-000823-9]
27. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 2.41 - - 0.866 - 0.791 0.753 - - - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
28. irx5a ENSDARG00000034043 1694 2.398 - - - - 0.881 0.717 - 0.800 - iroquois homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-010716-2]
29. psenen ENSDARG00000068698 2777 2.393 - 0.793 - - - 0.840 - 0.760 - presenilin enhancer, gamma-secretase subunit [Source:ZFIN;Acc:ZDB-GENE-040218-1]
30. srsf7a ENSDARG00000035325, ENSDARG00000110705 11788 2.392 - - 0.775 - 0.728 0.889 - - - serine/arginine-rich splicing factor 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1798]
31. TNRC6C_2 TNRC6C_2 2444 2.39 - - 0.735 - - 0.831 - 0.824 -
32. fam60al 2846 2.369 0.722 - 0.817 - - 0.830 - - - family with sequence similarity 60, member A, like
33. CYTH2 ENSDARG00000028800 2349 2.367 - - 0.706 - - 0.901 - 0.760 - cytohesin 2 [Source:HGNC Symbol;Acc:HGNC:9502]
34. khsrp ENSDARG00000026489 15738 2.363 0.743 - - - - 0.877 - 0.743 - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
35. nucks1a ENSDARG00000078473 28285 2.361 - 0.745 0.851 - - 0.765 - - - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
36. h2afvb ENSDARG00000116491 35692 2.339 0.711 0.891 - - - 0.737 - - - H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
37. nkain1 ENSDARG00000006859 1961 2.338 - - 0.735 - 0.865 0.738 - - - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
38. foxp4 ENSDARG00000076120 9458 2.32 - 0.805 0.723 - - 0.792 - - - forkhead box P4 [Source:ZFIN;Acc:ZDB-GENE-101207-1]
39. srrm1 ENSDARG00000001244 4972 2.309 - 0.844 0.752 - - - - 0.713 - serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
40. dpysl5a ENSDARG00000011141 1827 2.302 0.726 - 0.756 - - 0.820 - - - dihydropyrimidinase-like 5a [Source:ZFIN;Acc:ZDB-GENE-030131-3136]
41. cd99l2 ENSDARG00000056722 5036 2.298 0.714 0.745 - - - 0.839 - - - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
42. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 2.293 0.703 0.729 - - - 0.861 - - - 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
43. tmpob ENSDARG00000022978 8121 2.291 - - 0.850 - - 0.728 - 0.713 - thymopoietin b [Source:ZFIN;Acc:ZDB-GENE-050522-8]
44. gse1 ENSDARG00000062020 2337 2.274 - 0.769 0.738 - - 0.767 - - - Gse1 coiled-coil protein [Source:ZFIN;Acc:ZDB-GENE-030131-9569]
45. kmt2bb ENSDARG00000060697 5230 2.258 - 0.725 0.778 - - 0.755 - - - lysine (K)-specific methyltransferase 2Bb [Source:ZFIN;Acc:ZDB-GENE-080521-1]
46. BX511086.1 BX511086.1 8308 2.248 - 0.747 0.710 - - 0.791 - - -
47. ubr5 ENSDARG00000018192 9267 2.246 0.736 - 0.785 - - 0.725 - - - ubiquitin protein ligase E3 component n-recognin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6559]
48. arid2 ENSDARG00000007413 4413 2.236 - - - - - 0.711 - 0.772 0.753 AT rich interactive domain 2 (ARID, RFX-like) [Source:ZFIN;Acc:ZDB-GENE-030131-6311]
49. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 2.234 0.754 - 0.720 - 0.760 - - - - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
50. sf1 ENSDARG00000008188 5142 2.23 - - 0.721 - - 0.794 - 0.715 - splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]
51. prnprs3 ENSDARG00000003705 1854 2.225 0.714 0.765 - - - 0.746 - - - prion protein, related sequence 3 [Source:ZFIN;Acc:ZDB-GENE-041221-3]
52. CREBZF ENSDARG00000089787 4261 2.194 - 0.773 - - - 0.706 - 0.715 - CREB/ATF bZIP transcription factor [Source:ZFIN;Acc:ZDB-GENE-030131-8015]
53. asnsd1 830 2.178 - 0.701 - - - 0.771 - 0.706 - asparagine synthetase domain containing 1, transcript variant X1
54. AGO1 ENSDARG00000092644 4521 2.176 0.709 - 0.767 - - 0.700 - - - argonaute RISC catalytic component 1 [Source:ZFIN;Acc:ZDB-GENE-110606-3]
55. gas1b ENSDARG00000067984 1748 2.154 0.712 - 0.709 - - 0.733 - - - growth arrest-specific 1b [Source:ZFIN;Acc:ZDB-GENE-050302-79]
56. dap3 ENSDARG00000078500 2724 1.932 - - - 0.933 - - 0.999 - - death associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-051129-2]
57. sap30l ENSDARG00000030213 5795 1.922 - - - 0.934 - - - - 0.988 sap30-like [Source:ZFIN;Acc:ZDB-GENE-030131-5287]
58. hif1ab ENSDARG00000034293 10284 1.893 - - - - 0.904 - 0.989 - - hypoxia inducible factor 1 subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-040426-706]
59. tspan7 ENSDARG00000015759 13891 1.891 - - - 0.938 - - - - 0.953 tetraspanin 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5435]
60. aplp1 ENSDARG00000098368 2317 1.884 - - - - - 0.885 0.999 - - amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
61. yy1a ENSDARG00000042796 4982 1.88 - - - - 0.888 - - - 0.992 YY1 transcription factor a [Source:ZFIN;Acc:ZDB-GENE-030131-1117]
62. CORO1C CORO1C 5554 1.866 - - - - 0.870 - - - 0.996
63. her6 ENSDARG00000006514, ENSDARG00000111099 7477 1.858 - 0.860 - - - - 0.998 - - hairy-related 6 [Source:ZFIN;Acc:ZDB-GENE-980526-144]
64. C18H12orf23 C18H12orf23 5362 1.858 - 0.859 - - - - 0.999 - -
65. zgc:77849 ENSDARG00000012458, ENSDARG00000116615 21205 1.849 - - - - 0.881 - - - 0.968 zgc:77849 [Source:ZFIN;Acc:ZDB-GENE-030131-1107]
66. azi1_1 azi1_1 1375 1.847 - - - - 0.854 - - - 0.993
67. tspan14 ENSDARG00000055938, ENSDARG00000117111 4518 1.847 - 0.899 - 0.948 - - - - - tetraspanin 14 [Source:ZFIN;Acc:ZDB-GENE-060825-329]
68. ftr82 ENSDARG00000055647 3302 1.839 - - - - 0.847 - - - 0.992 finTRIM family, member 82 [Source:ZFIN;Acc:ZDB-GENE-030219-207]
69. arpp19b ENSDARG00000039880 4823 1.811 - - - 0.958 - - - 0.853 - cAMP-regulated phosphoprotein 19b [Source:ZFIN;Acc:ZDB-GENE-040426-930]
70. PIK3CA_1 PIK3CA_1 4065 1.811 - 0.819 - - - - - - 0.992
71. fzr1 fzr1 2984 1.804 - 0.858 - 0.946 - - - - -
72. otpa ENSDARG00000014201 2290 1.798 - - - 0.945 - 0.853 - - - orthopedia homeobox a [Source:ZFIN;Acc:ZDB-GENE-070216-1]
73. celf3a ENSDARG00000034668 2432 1.791 - - - 0.948 - 0.843 - - - cugbp, Elav-like family member 3a [Source:ZFIN;Acc:ZDB-GENE-000501-2]
74. LURAP1 ENSDARG00000044406, ENSDARG00000115301 938 1.791 - - - - - 0.792 0.999 - - leucine rich adaptor protein 1 [Source:ZFIN;Acc:ZDB-GENE-070928-35]
75. psma5 ENSDARG00000003526, ENSDARG00000116794 5106 1.786 0.797 - - - - - 0.989 - - proteasome subunit alpha 5 [Source:ZFIN;Acc:ZDB-GENE-040625-96]
76. olig4 ENSDARG00000052610, ENSDARG00000116678 1704 1.78 - - - - - 0.781 0.999 - - oligodendrocyte transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-030131-3580]
77. smo ENSDARG00000002952 6411 1.78 - - - - - 0.790 - - 0.990 smoothened, frizzled class receptor [Source:ZFIN;Acc:ZDB-GENE-980526-89]
78. TNRC6C_1 TNRC6C_1 6574 1.777 - 0.792 - - - - - - 0.985
79. arl4cb ENSDARG00000032708, ENSDARG00000110274 2769 1.777 - - - - - 0.819 - - 0.958 ADP-ribosylation factor-like 4Cb [Source:ZFIN;Acc:ZDB-GENE-040426-2382]
80. HECW1 HECW1 1531 1.776 - - - - - 0.777 0.999 - -
81. ago3b ENSDARG00000063079 1441 1.772 - 0.779 - - - - - - 0.993 argonaute RISC catalytic component 3b [Source:ZFIN;Acc:ZDB-GENE-060503-452]
82. srgap2a srgap2a 7197 1.772 - 0.824 - 0.948 - - - - -
83. ubap2 ubap2 4167 1.768 - - - 0.954 - 0.814 - - -
84. zic4 ENSDARG00000031307 1228 1.764 - - - 0.945 - 0.819 - - - zic family member 4 [Source:ZFIN;Acc:ZDB-GENE-040622-4]
85. prrc2c ENSDARG00000057583, ENSDARG00000116399 1673 1.762 - 0.763 - - - - 0.999 - - proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
86. rbb4l ENSDARG00000015208 5542 1.762 - - 0.771 - - - - - 0.991 retinoblastoma binding protein 4, like [Source:ZFIN;Acc:ZDB-GENE-030131-848]
87. btg2 ENSDARG00000020298 6616 1.758 - - - - 0.921 0.837 - - - B-cell translocation gene 2 [Source:ZFIN;Acc:ZDB-GENE-000210-15]
88. prtgb ENSDARG00000040442 12365 1.752 - 0.768 - - - - 0.984 - - protogenin homolog b (Gallus gallus) [Source:ZFIN;Acc:ZDB-GENE-060302-1]
89. mdkb ENSDARG00000020708 5393 1.75 - - - - 0.911 0.839 - - - midkine b [Source:ZFIN;Acc:ZDB-GENE-010131-6]
90. PACS1_1 PACS1_1 1264 1.748 - - - 0.936 - 0.812 - - -
91. slc25a12 ENSDARG00000102362 2773 1.745 - 0.819 - 0.926 - - - - - solute carrier family 25 (aspartate/glutamate carrier), member 12 [Source:ZFIN;Acc:ZDB-GENE-031006-11]
92. mapk14b ENSDARG00000028721 1486 1.745 - 0.746 - - - - 0.999 - - mitogen-activated protein kinase 14b [Source:ZFIN;Acc:ZDB-GENE-021007-1]
93. rbb4 rbb4 15541 1.744 - - 0.842 0.902 - - - - -
94. prox1a ENSDARG00000055158 1411 1.742 - - - - 0.852 0.890 - - - prospero homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-397]
95. irf2bp2a ENSDARG00000004702 6719 1.738 - 0.781 - - - - - - 0.957 interferon regulatory factor 2 binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-030131-7809]
96. alyref ENSDARG00000077732 25934 1.732 0.742 - - - - - 0.990 - - Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
97. mapk3 ENSDARG00000070573 6842 1.731 - 0.818 - 0.913 - - - - - mitogen-activated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040121-1]
98. SRGAP3 ENSDARG00000060309 5353 1.731 - - 0.775 - - - - - 0.956 SLIT-ROBO Rho GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-060524-4]
99. sh3bp5lb 1090 1.725 - - - 0.934 - 0.791 - - - SH3-binding domain protein 5-like, b
100. SSBP4 ENSDARG00000056483 5156 1.725 - - 0.773 0.952 - - - - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]

There are 2134 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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