Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for capn1b

Gene Name Gene ID Reads Annotation
capn1b ENSDARG00000052748, ENSDARG00000117045 320 calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]










Genes with expression patterns similar to capn1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. capn1b ENSDARG00000052748, ENSDARG00000117045 320 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
2. csf1b ENSDARG00000068263 248 2.57 0.933 0.883 - - - 0.754 - - - colony stimulating factor 1b (macrophage) [Source:ZFIN;Acc:ZDB-GENE-061215-106]
3. CU179656.1 ENSDARG00000107086 270 2.531 0.826 0.804 - - - 0.901 - - -
4. si:dkey-122c11.4 si:dkey-122c11.4 13 2.513 0.738 0.837 - - - 0.938 - - -
5. ptf1a ENSDARG00000014479 349 2.494 0.738 0.837 - - - 0.919 - - - pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
6. CT573433.2 CT573433.2 115 2.484 0.710 0.837 - - - 0.937 - - -
7. tagln3a ENSDARG00000079805 123 2.48 0.750 0.837 - - - 0.893 - - - transgelin 3a [Source:ZFIN;Acc:ZDB-GENE-060531-53]
8. rbfox3 rbfox3 1443 2.376 0.724 0.817 - - - 0.835 - - -
9. gng3 ENSDARG00000009553 2530 2.357 0.786 0.759 - - - 0.812 - - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
10. bdnf ENSDARG00000018817 193 2.343 - 0.837 - - - 0.797 0.709 - - brain-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-000412-1]
11. syngr3a ENSDARG00000014871 405 2.26 0.716 0.810 - - - 0.734 - - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
12. PDZD4 ENSDARG00000090564 131 1.903 0.939 - - - - 0.964 - - - PDZ domain containing 4 [Source:HGNC Symbol;Acc:HGNC:21167]
13. nmu ENSDARG00000043299 67 1.896 0.958 - - - - 0.938 - - - neuromedin U [Source:ZFIN;Acc:ZDB-GENE-041001-111]
14. ncam1a ENSDARG00000056181 193 1.818 0.892 0.926 - - - - - - - neural cell adhesion molecule 1a [Source:ZFIN;Acc:ZDB-GENE-990415-31]
15. wnt10b ENSDARG00000040925 162 1.807 0.869 - - - - 0.938 - - - wingless-type MMTV integration site family, member 10b [Source:ZFIN;Acc:ZDB-GENE-980526-524]
16. MAN1B1 MAN1B1 47 1.805 0.929 - - - - 0.876 - - -
17. KCNG2 ENSDARG00000035961 58 1.795 0.958 0.837 - - - - - - - potassium voltage-gated channel, subfamily G, member 2 [Source:ZFIN;Acc:ZDB-GENE-100701-1]
18. entpd3 ENSDARG00000035309 263 1.793 0.927 0.866 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6186]
19. porcn ENSDARG00000052558, ENSDARG00000111556 110 1.785 - 0.837 - - - 0.948 - - - porcupine O-acyltransferase [Source:ZFIN;Acc:ZDB-GENE-081105-87]
20. nlgn3b ENSDARG00000062376 171 1.783 0.958 - - - - 0.825 - - - neuroligin 3b [Source:ZFIN;Acc:ZDB-GENE-060526-197]
21. prdm13 ENSDARG00000078701 205 1.781 0.824 - - - - 0.957 - - - PR domain containing 13 [Source:ZFIN;Acc:ZDB-GENE-080616-1]
22. si:dkey-272j9.2 si:dkey-272j9.2 91 1.775 - 0.837 - - - 0.938 - - -
23. syt9b ENSDARG00000029239 31 1.775 - 0.837 - - - 0.938 - - - synaptotagmin IXb [Source:ZFIN;Acc:ZDB-GENE-040822-6]
24. gnb5b ENSDARG00000055377 98 1.77 0.903 0.867 - - - - - - - guanine nucleotide binding protein (G protein), beta 5b [Source:ZFIN;Acc:ZDB-GENE-040426-1712]
25. NPAS3 ENSDARG00000109820 362 1.761 0.924 0.837 - - - - - - - neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
26. C9H3orf17 C9H3orf17 69 1.759 0.849 0.910 - - - - - - -
27. lbx1a ENSDARG00000018321 634 1.743 0.924 - - - - 0.819 - - - ladybird homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-040724-40]
28. CT027778.1 CT027778.1 265 1.725 0.958 0.767 - - - - - - -
29. hpca ENSDARG00000018397, ENSDARG00000110115 3866 1.721 0.808 0.913 - - - - - - - hippocalcin [Source:ZFIN;Acc:ZDB-GENE-040426-1683]
30. pou4f1 ENSDARG00000005559 821 1.718 0.815 - - - - 0.903 - - - POU class 4 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-000523-2]
31. sox12 ENSDARG00000025847 681 1.706 0.869 0.837 - - - - - - - SRY (sex determining region Y)-box 12 [Source:ZFIN;Acc:ZDB-GENE-040724-33]
32. SCAMP5 SCAMP5 19 1.702 - 0.837 - - - 0.865 - - -
33. sez6l ENSDARG00000100594 35 1.699 0.738 - - - - 0.961 - - - seizure related 6 homolog (mouse)-like [Source:ZFIN;Acc:ZDB-GENE-091204-162]
34. cspg5a ENSDARG00000069981 1699 1.689 0.911 - - - - 0.778 - - - chondroitin sulfate proteoglycan 5a [Source:ZFIN;Acc:ZDB-GENE-080425-4]
35. scube2 ENSDARG00000037362 2833 1.689 0.939 - - - - 0.750 - - - signal peptide, CUB domain, EGF-like 2 [Source:ZFIN;Acc:ZDB-GENE-050302-80]
36. slc17a6b ENSDARG00000041150 823 1.684 0.847 0.837 - - - - - - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
37. khdrbs2 ENSDARG00000069469 160 1.681 - 0.837 - - - 0.844 - - - KH domain containing, RNA binding, signal transduction associated 2 [Source:ZFIN;Acc:ZDB-GENE-061013-497]
38. NTRK3 NTRK3 163 1.68 0.843 0.837 - - - - - - -
39. si:dkey-253a1.2 si:dkey-253a1.2 52 1.673 0.734 - - - - 0.939 - - -
40. zgc:165582 ENSDARG00000074362 198 1.67 - - - - - 0.938 0.732 - - zgc:165582 [Source:ZFIN;Acc:ZDB-GENE-070820-9]
41. fgf13b ENSDARG00000056633 455 1.666 0.955 - - - - 0.711 - - - fibroblast growth factor 13b [Source:ZFIN;Acc:ZDB-GENE-040426-1793]
42. prdm14 ENSDARG00000045371 106 1.663 - 0.837 - - - 0.826 - - - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
43. CABZ01044048.1 ENSDARG00000011463 20 1.661 - - - - - 0.938 0.723 - - coagulation factor IX-like [Source:NCBI gene;Acc:100004411]
44. Mar-09 Mar-09 126 1.654 0.922 - - - - 0.732 - - -
45. adam11 ENSDARG00000079204 298 1.652 0.819 - - - - 0.833 - - - ADAM metallopeptidase domain 11 [Source:ZFIN;Acc:ZDB-GENE-070808-3]
46. scrt2 ENSDARG00000056175 4331 1.644 0.914 0.730 - - - - - - - scratch family zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-030131-4097]
47. scn2b ENSDARG00000101713 796 1.64 - 0.745 - - - 0.895 - - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
48. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 1.639 0.894 0.745 - - - - - - - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
49. mettl5 ENSDARG00000068893 159 1.638 - 0.832 - - - 0.806 - - - methyltransferase like 5 [Source:ZFIN;Acc:ZDB-GENE-041010-21]
50. pou4f2 ENSDARG00000069737 451 1.636 - 0.820 - - - 0.816 - - - POU class 4 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040401-1]
51. jph3 ENSDARG00000102204 175 1.634 0.797 0.837 - - - - - - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
52. TRPC4_1 TRPC4_1 212 1.63 0.793 0.837 - - - - - - -
53. uckl1a ENSDARG00000001686 21 1.622 - 0.837 - - - 0.785 - - - uridine-cytidine kinase 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040724-238]
54. b3gat2 ENSDARG00000030733 348 1.617 0.750 - - - - 0.867 - - - beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:ZFIN;Acc:ZDB-GENE-040801-191]
55. cadpsb ENSDARG00000070567 458 1.604 0.736 - - - - 0.868 - - - Ca2+-dependent activator protein for secretion b [Source:ZFIN;Acc:ZDB-GENE-110621-2]
56. IGLON5 ENSDARG00000022176 1353 1.601 0.709 - - - - 0.892 - - - IgLON family member 5 [Source:HGNC Symbol;Acc:HGNC:34550]
57. PPP2R5B ENSDARG00000054931 213 1.599 0.749 - - - - 0.850 - - - protein phosphatase 2, regulatory subunit B', beta [Source:ZFIN;Acc:ZDB-GENE-101208-1]
58. bhlhe22 ENSDARG00000058039 1673 1.598 0.844 - - - - 0.754 - - - basic helix-loop-helix family, member e22 [Source:ZFIN;Acc:ZDB-GENE-040426-1411]
59. necab2 ENSDARG00000056745, ENSDARG00000110976 304 1.596 0.725 - - - - 0.871 - - - N-terminal EF-hand calcium binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050706-167]
60. dbx2 2971 1.595 0.779 - - - - 0.816 - - - developing brain homeobox 2
61. cacng3b ENSDARG00000076401 91 1.595 - 0.837 - - - 0.758 - - - calcium channel, voltage-dependent, gamma subunit 3b [Source:ZFIN;Acc:ZDB-GENE-090828-1]
62. snap25b ENSDARG00000058117 469 1.583 0.741 - - - - 0.842 - - - synaptosomal-associated protein, 25b [Source:ZFIN;Acc:ZDB-GENE-980526-392]
63. MCTP1 MCTP1 219 1.582 0.861 0.721 - - - - - - -
64. pcdh2ab7 7 1.575 0.738 0.837 - - - - - - - protocadherin 2 alpha b 7
65. HIST1H2BA ENSDARG00000116654 10 1.575 0.738 0.837 - - - - - - - histone cluster 1 H2B family member a [Source:HGNC Symbol;Acc:HGNC:18730]
66. ABCA7 ABCA7 12 1.575 0.738 0.837 - - - - - - -
67. atxn1b ENSDARG00000060862 345 1.575 0.738 0.837 - - - - - - - ataxin 1b [Source:ZFIN;Acc:ZDB-GENE-061218-2]
68. si:ch73-103b2.1 ENSDARG00000095944, ENSDARG00000099867 40 1.575 0.738 0.837 - - - - - - - si:ch73-103b2.1 [Source:ZFIN;Acc:ZDB-GENE-110408-42]
69. tecrl2 tecrl2 11 1.575 0.738 0.837 - - - - - - -
70. PHYH ENSDARG00000086740 15 1.574 - 0.837 - - - 0.737 - - - phytanoyl-CoA 2-hydroxylase [Source:ZFIN;Acc:ZDB-GENE-050417-361]
71. CU914780.1 ENSDARG00000114023 105 1.571 0.734 0.837 - - - - - - -
72. drgx ENSDARG00000069329 610 1.569 0.739 - - - - 0.830 - - - dorsal root ganglia homeobox [Source:ZFIN;Acc:ZDB-GENE-070330-1]
73. rgs11 ENSDARG00000037646 24 1.565 0.738 - - - - 0.827 - - - regulator of G protein signaling 11 [Source:ZFIN;Acc:ZDB-GENE-080220-46]
74. ARHGAP22 ENSDARG00000076434 1406 1.563 0.821 - - - - 0.742 - - - Rho GTPase activating protein 22 [Source:HGNC Symbol;Acc:HGNC:30320]
75. lmx1a ENSDARG00000020354 111 1.563 - 0.837 - 0.726 - - - - - LIM homeobox transcription factor 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041014-332]
76. AL935029.1 AL935029.1 514 1.561 - 0.817 - - - 0.744 - - -
77. basp1 ENSDARG00000053358, ENSDARG00000110677 2590 1.558 0.848 - - - - 0.710 - - - brain abundant, membrane attached signal protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-158]
78. tspan3b ENSDARG00000053559, ENSDARG00000112641 118 1.557 - 0.837 - - - 0.720 - - - tetraspanin 3b [Source:ZFIN;Acc:ZDB-GENE-070424-42]
79. rnf220b ENSDARG00000075183 53 1.553 - 0.748 - - - - 0.805 - - ring finger protein 220b [Source:ZFIN;Acc:ZDB-GENE-081104-195]
80. SPOCK1 ENSDARG00000074644 794 1.553 0.757 - - - - 0.796 - - - SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 [Source:ZFIN;Acc:ZDB-GENE-110428-1]
81. zgc:113210 ENSDARG00000002872 99 1.55 - 0.837 - - - 0.713 - - - zgc:113210 [Source:ZFIN;Acc:ZDB-GENE-050320-83]
82. CABZ01039301.1 CABZ01039301.1 189 1.546 - - - 0.720 - - 0.826 - -
83. amph ENSDARG00000007663 599 1.545 0.800 0.745 - - - - - - - amphiphysin [Source:ZFIN;Acc:ZDB-GENE-040426-1711]
84. slc8a2b ENSDARG00000100592 598 1.542 0.740 - - - - 0.802 - - - solute carrier family 8 (sodium/calcium exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-050419-209]
85. MYO1C MYO1C 140 1.538 - - - 0.796 - - 0.742 - -
86. trim46b ENSDARG00000058649 54 1.538 0.701 0.837 - - - - - - - tripartite motif containing 46b [Source:ZFIN;Acc:ZDB-GENE-060503-466]
87. foxb1b ENSDARG00000053650, ENSDARG00000110408, ENSDARG00000113373 51 1.535 - - - 0.801 - 0.734 - - - forkhead box B1b [Source:ZFIN;Acc:ZDB-GENE-990415-77]
88. tlx2 ENSDARG00000011273 870 1.534 0.726 - - - - 0.808 - - - T cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-020208-1]
89. si:ch211-152f6.6 si:ch211-152f6.6 278 1.53 0.747 0.783 - - - - - - -
90. PCDH9 ENSDARG00000063264 1309 1.523 0.806 0.717 - - - - - - - protocadherin 9 [Source:ZFIN;Acc:ZDB-GENE-091015-1]
91. gabrb2 ENSDARG00000079586 33 1.523 0.738 - - - - 0.785 - - - gamma-aminobutyric acid (GABA) A receptor, beta 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8196]
92. jag1a ENSDARG00000030289 1275 1.521 0.772 0.749 - - - - - - - jagged 1a [Source:ZFIN;Acc:ZDB-GENE-011128-2]
93. zic6 ENSDARG00000071496 402 1.519 - 0.748 - - - 0.771 - - - zic family member 6 [Source:ZFIN;Acc:ZDB-GENE-061207-1]
94. ebf1b ENSDARG00000069196 64 1.519 0.738 - - - - 0.781 - - - early B cell factor 1b [Source:ZFIN;Acc:ZDB-GENE-090814-2]
95. syt11b ENSDARG00000056105 578 1.519 - 0.809 - - - 0.710 - - - synaptotagmin XIb [Source:ZFIN;Acc:ZDB-GENE-090601-7]
96. rab42a ENSDARG00000034215 692 1.507 0.703 - - - - 0.804 - - - RAB42, member RAS oncogene family a [Source:ZFIN;Acc:ZDB-GENE-040426-1983]
97. slc1a2b ENSDARG00000102453 3136 1.505 - 0.747 - - - 0.758 - - - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
98. lhx1b ENSDARG00000007944, ENSDARG00000111635 254 1.503 0.773 - - - - 0.730 - - - LIM homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-980526-116]
99. tmem179 ENSDARG00000013292 343 1.497 - 0.783 - - - 0.714 - - - transmembrane protein 179 [Source:ZFIN;Acc:ZDB-GENE-040808-25]
100. lhx1a ENSDARG00000014018 958 1.493 - 0.745 - - - 0.748 - - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]

There are 1464 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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