Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for bdnf

Gene Name Gene ID Reads Annotation
bdnf ENSDARG00000018817 193 brain-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-000412-1]










Genes with expression patterns similar to bdnf

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. bdnf ENSDARG00000018817 193 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 brain-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-000412-1]
2. si:ch211-152f6.6 si:ch211-152f6.6 278 2.437 - 0.946 - - - 0.711 - 0.780 -
3. capn1b ENSDARG00000052748, ENSDARG00000117045 320 2.343 - 0.837 - - - 0.797 0.709 - - calpain 1, (mu/I) large subunit b [Source:ZFIN;Acc:ZDB-GENE-060503-491]
4. pdia2 ENSDARG00000018263 74 1.936 - 1.000 - - - - - 0.936 - protein disulfide isomerase family A, member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-705]
5. KCNAB2 KCNAB2 129 1.91 - 1.000 - - - - - 0.910 -
6. NTRK3 NTRK3 163 1.876 - 1.000 - - - - - 0.876 -
7. uckl1a ENSDARG00000001686 21 1.861 - 1.000 - - - 0.861 - - - uridine-cytidine kinase 1-like 1a [Source:ZFIN;Acc:ZDB-GENE-040724-238]
8. dusp3a ENSDARG00000061255, ENSDARG00000113934 328 1.848 - 0.909 - - - - - 0.939 - dual specificity phosphatase 3a [Source:ZFIN;Acc:ZDB-GENE-111207-3]
9. prdm14 ENSDARG00000045371 106 1.842 - 1.000 - - - 0.842 - - - PR domain containing 14 [Source:ZFIN;Acc:ZDB-GENE-030131-2709]
10. nebl ENSDARG00000021200 40 1.84 - 1.000 - - - 0.840 - - - nebulette [Source:ZFIN;Acc:ZDB-GENE-050320-151]
11. atxn1b ENSDARG00000060862 345 1.831 - 1.000 - - - - - 0.831 - ataxin 1b [Source:ZFIN;Acc:ZDB-GENE-061218-2]
12. SNORD27 SNORD27 181 1.82 - - - 0.881 - - - 0.939 -
13. naglu ENSDARG00000030156 378 1.801 - - - 0.911 - - - 0.890 - N-acetylglucosaminidase, alpha [Source:ZFIN;Acc:ZDB-GENE-100726-2]
14. ksr2 ENSDARG00000094526 134 1.8 - 0.901 - - - - - 0.899 - kinase suppressor of ras 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8047]
15. b3gat3 ENSDARG00000001939 58 1.795 - 0.816 - 0.979 - - - - - beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) [Source:ZFIN;Acc:ZDB-GENE-020419-3]
16. ptf1a ENSDARG00000014479 349 1.792 - 1.000 - - - 0.792 - - - pancreas associated transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-030616-579]
17. alkbh6 ENSDARG00000077253 117 1.769 - - - - - 0.839 - 0.930 - alkB homolog 6 [Source:ZFIN;Acc:ZDB-GENE-060407-1]
18. mark4a ENSDARG00000023914, ENSDARG00000112220 445 1.757 - - - 0.893 - - - 0.864 - MAP/microtubule affinity-regulating kinase 4a [Source:ZFIN;Acc:ZDB-GENE-060531-156]
19. porcn ENSDARG00000052558, ENSDARG00000111556 110 1.742 - 1.000 - - - 0.742 - - - porcupine O-acyltransferase [Source:ZFIN;Acc:ZDB-GENE-081105-87]
20. scn2b ENSDARG00000101713 796 1.731 - 0.909 - - - 0.822 - - - sodium channel, voltage-gated, type II, beta [Source:ZFIN;Acc:ZDB-GENE-070920-1]
21. GALNT9 ENSDARG00000006832 120 1.726 - - - - - 0.790 - 0.936 - polypeptide N-acetylgalactosaminyltransferase 9 [Source:ZFIN;Acc:ZDB-GENE-060526-21]
22. ELFN1 ELFN1 59 1.726 - - - - - 0.812 - 0.914 -
23. GPR156 ENSDARG00000086215 126 1.712 - 0.746 - - - - - 0.966 - G protein-coupled receptor 156 [Source:ZFIN;Acc:ZDB-GENE-060201-2]
24. gria4b ENSDARG00000059368, ENSDARG00000114212, ENSDARG00000115594 255 1.711 - 1.000 - - - 0.711 - - - glutamate receptor, ionotropic, AMPA 4b [Source:ZFIN;Acc:ZDB-GENE-030131-8013]
25. si:dkey-272j9.2 si:dkey-272j9.2 91 1.707 - 1.000 - - - 0.707 - - -
26. syt9b ENSDARG00000029239 31 1.707 - 1.000 - - - 0.707 - - - synaptotagmin IXb [Source:ZFIN;Acc:ZDB-GENE-040822-6]
27. si:dkey-122c11.4 si:dkey-122c11.4 13 1.707 - 1.000 - - - 0.707 - - -
28. gng3 ENSDARG00000009553 2530 1.706 - 0.929 - - - 0.777 - - - guanine nucleotide binding protein (G protein), gamma 3 [Source:ZFIN;Acc:ZDB-GENE-010705-1]
29. calb1 ENSDARG00000031598 252 1.705 - 1.000 - - - 0.705 - - - calbindin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8107]
30. lhx1a ENSDARG00000014018 958 1.685 - 0.903 - - - 0.782 - - - LIM homeobox 1a [Source:ZFIN;Acc:ZDB-GENE-980526-347]
31. CR293532.1 ENSDARG00000115628 204 1.681 - - - 0.764 - - - 0.917 -
32. FP102311.1 FP102311.1 118 1.679 0.894 - - - - - 0.785 - -
33. btbd2 btbd2 1296 1.677 - - - - - 0.795 - 0.882 -
34. tbx16 ENSDARG00000007329 255 1.672 - - - - - 0.778 - 0.894 - T-box 16 [Source:ZFIN;Acc:ZDB-GENE-990615-5]
35. ccdc82 ENSDARG00000014966 563 1.654 - - - 0.940 - - - 0.714 - coiled-coil domain containing 82 [Source:ZFIN;Acc:ZDB-GENE-030131-5749]
36. zgc:194210 ENSDARG00000073799, ENSDARG00000115078 100 1.653 0.946 - - - - 0.707 - - - zgc:194210 [Source:ZFIN;Acc:ZDB-GENE-030131-2476]
37. phactr3a ENSDARG00000058243 150 1.651 - - - - - 0.749 - 0.902 - phosphatase and actin regulator 3a [Source:ZFIN;Acc:ZDB-GENE-080220-4]
38. ATP6AP1L ATP6AP1L 164 1.649 - - - - - 0.713 - 0.936 -
39. usp25 ENSDARG00000012314 734 1.649 - - - 0.820 - - - 0.829 - ubiquitin specific peptidase 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2847]
40. secisbp2 ENSDARG00000073892 79 1.642 - 0.704 - - - - - 0.938 - SECIS binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-050208-263]
41. ZNF337_2 ZNF337_2 260 1.637 - - - 0.896 - 0.741 - - -
42. dcun1d4 ENSDARG00000092394 258 1.625 0.758 - - - - 0.867 - - - DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-041014-248]
43. lbx1b ENSDARG00000018611 399 1.62 - 0.789 - - - 0.831 - - - ladybird homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050309-27]
44. map1aa ENSDARG00000059601 599 1.62 - - - 0.866 - 0.754 - - - microtubule-associated protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-100426-2]
45. KCNB2 ENSDARG00000088842 35 1.618 - 0.806 - - - 0.812 - - - potassium voltage-gated channel subfamily B member 2 [Source:HGNC Symbol;Acc:HGNC:6232]
46. LO018102.1 ENSDARG00000079790 234 1.6 - - - - - 0.702 - 0.898 - phospholipid phosphatase 1-like [Source:NCBI gene;Acc:794598]
47. rxrga ENSDARG00000005593 342 1.597 - - - 0.763 - - - 0.834 - retinoid x receptor, gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-36]
48. raly ENSDARG00000059972 481 1.592 - - - - - 0.808 - 0.784 - RALY heterogeneous nuclear ribonucleoprotein [Source:ZFIN;Acc:ZDB-GENE-041010-127]
49. mff ENSDARG00000053753 905 1.591 - - - 0.808 - - - 0.783 - mitochondrial fission factor [Source:ZFIN;Acc:ZDB-GENE-040426-1510]
50. syt4 ENSDARG00000036505 421 1.578 - 0.815 - - - 0.763 - - - synaptotagmin IV [Source:ZFIN;Acc:ZDB-GENE-030131-7297]
51. ATP6AP1L_1 ATP6AP1L_1 508 1.56 - - - - - 0.792 - 0.768 -
52. st3gal2 ENSDARG00000112898 370 1.559 - 0.742 - - - - - 0.817 - ST3 beta-galactoside alpha-2,3-sialyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-050419-181]
53. rbfox3 rbfox3 1443 1.549 - 0.833 - - - 0.716 - - -
54. scn8aa ENSDARG00000005775 792 1.548 - 0.754 - 0.794 - - - - - sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
55. PRR12 PRR12 38 1.534 - - 0.722 - - 0.812 - - -
56. syngr3a ENSDARG00000014871 405 1.52 - 0.806 - - - 0.714 - - - synaptogyrin 3a [Source:ZFIN;Acc:ZDB-GENE-050522-541]
57. MAP1B ENSDARG00000060434, ENSDARG00000113782 1983 1.504 - - - - - 0.707 - 0.797 - microtubule-associated protein 1B [Source:ZFIN;Acc:ZDB-GENE-130530-690]
58. b3gat2 ENSDARG00000030733 348 1.5 - - - - - 0.705 - 0.795 - beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S) [Source:ZFIN;Acc:ZDB-GENE-040801-191]
59. gpr85 ENSDARG00000068701, ENSDARG00000116501 372 1.499 - 0.788 - - - - - 0.711 - G protein-coupled receptor 85 [Source:ZFIN;Acc:ZDB-GENE-000710-2]
60. entpd5b ENSDARG00000093659 450 1.491 - - - 0.779 - - - 0.712 - ectonucleoside triphosphate diphosphohydrolase 5b [Source:ZFIN;Acc:ZDB-GENE-091118-88]
61. lgi2a ENSDARG00000111069 965 1.474 - 0.743 - - - 0.731 - - - leucine-rich repeat LGI family, member 2a [Source:ZFIN;Acc:ZDB-GENE-060217-2]
62. spsb4a ENSDARG00000016084, ENSDARG00000116235 544 1.461 - - - 0.760 - 0.701 - - - splA/ryanodine receptor domain and SOCS box containing 4a [Source:ZFIN;Acc:ZDB-GENE-070911-3]
63. CR391997.1 CR391997.1 62 1.433 - - 0.723 - - 0.710 - - -
64. mthfd2l ENSDARG00000054199 25 1 - 1.000 - - - - - - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like [Source:ZFIN;Acc:ZDB-GENE-030131-5707]
65. si:ch211-141e20.2 ENSDARG00000093349 61 1 - 1.000 - - - - - - - si:ch211-141e20.2 [Source:ZFIN;Acc:ZDB-GENE-070912-75]
66. si:dkey-32n7.7 ENSDARG00000063444 4 1 - 1.000 - - - - - - - si:dkey-32n7.7 [Source:ZFIN;Acc:ZDB-GENE-121214-179]
67. si:ch211-113a14.19_4 ENSDARG00000109926, ENSDARG00000111536, ENSDARG00000113481, ENSDARG00000113707, ENSDARG00000115875 18 1 - 1.000 - - - - - - - si:ch211-113a14.19 [Source:ZFIN;Acc:ZDB-GENE-121214-198]
68. foxq1a ENSDARG00000030896 121 1 - 1.000 - - - - - - - forkhead box Q1a [Source:ZFIN;Acc:ZDB-GENE-070424-74]
69. tap1 ENSDARG00000079766 75 1 - 1.000 - - - - - - - transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) [Source:ZFIN;Acc:ZDB-GENE-050517-43]
70. CABZ01041769.1 CABZ01041769.1 17 1 - 1.000 - - - - - - -
71. htr2cl1 ENSDARG00000018228, ENSDARG00000113913 131 1 - 1.000 - - - - - - - 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1 [Source:ZFIN;Acc:ZDB-GENE-081104-48]
72. zgc:113426 ENSDARG00000051793 37 1 - 1.000 - - - - - - - zgc:113426 [Source:ZFIN;Acc:ZDB-GENE-050913-149]
73. adrb1_1 ENSDARG00000007490, ENSDARG00000115574 9 1 - 1.000 - - - - - - - adrenoceptor beta 1 [Source:ZFIN;Acc:ZDB-GENE-081022-145]
74. lingo1a ENSDARG00000034165 179 1 - 1.000 - - - - - - - leucine rich repeat and Ig domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-080327-16]
75. spata20 ENSDARG00000013880 46 1 - 1.000 - - - - - - - spermatogenesis associated 20 [Source:ZFIN;Acc:ZDB-GENE-030131-7269]
76. her3 ENSDARG00000076857 131 1 - 1.000 - - - - - - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
77. BX469915.2 BX469915.2 48 1 - 1.000 - - - - - - -
78. CR391967.1 CR391967.1 135 1 - 1.000 - - - - - - -
79. trim46b ENSDARG00000058649 54 1 - 1.000 - - - - - - - tripartite motif containing 46b [Source:ZFIN;Acc:ZDB-GENE-060503-466]
80. AL935186.3 ENSDARG00000109223 19 1 - 1.000 - - - - - - -
81. si:ch211-265m20.8 120 1 - 1.000 - - - - - - - si:ch211-265m20.8, transcript variant X1
82. CU914780.1 ENSDARG00000114023 105 1 - 1.000 - - - - - - -
83. TMC2 TMC2 5 1 - 1.000 - - - - - - -
84. igfbp5a ENSDARG00000039264, ENSDARG00000111203 117 1 - 1.000 - - - - - - - insulin-like growth factor binding protein 5a [Source:ZFIN;Acc:ZDB-GENE-070620-8]
85. htr3a ENSDARG00000089212 51 1 - 1.000 - - - - - - - 5-hydroxytryptamine (serotonin) receptor 3A [Source:ZFIN;Acc:ZDB-GENE-071012-5]
86. SRCIN1 SRCIN1 5 1 - 1.000 - - - - - - -
87. TGM1 ENSDARG00000017799 3 1 - 1.000 - - - - - - - transglutaminase 1, K polypeptide [Source:ZFIN;Acc:ZDB-GENE-030131-9032]
88. si:dkeyp-35e5.1 si:dkeyp-35e5.1 12 1 - 1.000 - - - - - - -
89. CR391998.1 ENSDARG00000091817 15 1 - 1.000 - - - - - - - putative protein TPRXL [Source:NCBI gene;Acc:101882255]
90. si:ch73-127m5.1 ENSDARG00000060680 253 1 - 1.000 - - - - - - - si:ch73-127m5.1 [Source:ZFIN;Acc:ZDB-GENE-130531-25]
91. nfixa ENSDARG00000043226 14 1 - 1.000 - - - - - - - nuclear factor I/Xa [Source:ZFIN;Acc:ZDB-GENE-080722-15]
92. si:dkey-57l19.1 ENSDARG00000098143 1 1 - 1.000 - - - - - - - si:dkey-57l19.1 [Source:ZFIN;Acc:ZDB-GENE-060503-171]
93. si:ch211-13k12.1 si:ch211-13k12.1 25 1 - 1.000 - - - - - - -
94. TESPA1 ENSDARG00000053311 29 1 - 1.000 - - - - - - - thymocyte expressed, positive selection associated 1 [Source:ZFIN;Acc:ZDB-GENE-120727-10]
95. si:dkeyp-46h3.3 ENSDARG00000092887 11 1 - 1.000 - - - - - - - si:dkeyp-46h3.3 [Source:ZFIN;Acc:ZDB-GENE-060503-748]
96. jph3 ENSDARG00000102204 175 1 - 1.000 - - - - - - - junctophilin 3 [Source:ZFIN;Acc:ZDB-GENE-060503-415]
97. si:dkey-220a11.9 si:dkey-220a11.9 10 1 - 1.000 - - - - - - -
98. taar16f ENSDARG00000116273 0 1 - 1.000 - - - - - - - trace amine associated receptor 16f [Source:ZFIN;Acc:ZDB-GENE-060413-20]
99. tmigd1 ENSDARG00000007040 19 1 - 1.000 - - - - - - - transmembrane and immunoglobulin domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-080303-6]
100. FUT9 FUT9 91 1 - 1.000 - - - - - - -

There are 1463 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA