Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for atrn

Gene Name Gene ID Reads Annotation
atrn ENSDARG00000062164, ENSDARG00000110632 668 attractin [Source:ZFIN;Acc:ZDB-GENE-090312-21]










Genes with expression patterns similar to atrn

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. atrn ENSDARG00000062164, ENSDARG00000110632 668 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 attractin [Source:ZFIN;Acc:ZDB-GENE-090312-21]
2. cwc22 ENSDARG00000014008 2385 1.61 - 0.768 - - - - 0.842 - - CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]
3. rad21a ENSDARG00000006092 393 1.56 0.728 0.832 - - - - - - - RAD21 cohesin complex component a [Source:ZFIN;Acc:ZDB-GENE-030131-994]
4. crfb6 1137 1.536 - - - - - - 0.806 - 0.730 cytokine receptor family member b6
5. fndc3bb ENSDARG00000062023 1502 1.508 - 0.771 - - - - 0.737 - - fibronectin type III domain containing 3Bb [Source:ZFIN;Acc:ZDB-GENE-070510-2]
6. snrnp200 ENSDARG00000077536, ENSDARG00000114486 4981 1.492 0.727 - - - - - - - 0.765 small nuclear ribonucleoprotein 200 (U5) [Source:ZFIN;Acc:ZDB-GENE-081105-64]
7. CR352229.2 CR352229.2 784 1.484 - 0.782 - - - - 0.702 - -
8. CR352290.2 CR352290.2 303 1.449 - 0.729 - - - - 0.720 - -
9. rnd1 rnd1 1086 1.437 - 0.716 - - - - 0.721 - -
10. prkx ENSDARG00000060716 530 0.871 - 0.871 - - - - - - - protein kinase X-linked [Source:ZFIN;Acc:ZDB-GENE-090313-408]
11. ccdc6a ENSDARG00000043334, ENSDARG00000112924 1774 0.867 - - - - - - 0.867 - - coiled-coil domain containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-7848]
12. LAMTOR4 ENSDARG00000045542 1181 0.866 - 0.866 - - - - - - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7438]
13. ABCC6_1 ABCC6_1 403 0.859 - 0.859 - - - - - - -
14. ATP6AP1L_1 ATP6AP1L_1 508 0.856 - 0.856 - - - - - - -
15. ccdc59 ENSDARG00000045755 297 0.853 - 0.853 - - - - - - - coiled-coil domain containing 59 [Source:ZFIN;Acc:ZDB-GENE-041210-91]
16. CABZ01088330.1 CABZ01088330.1 679 0.85 - 0.850 - - - - - - -
17. CABZ01038493.1 ENSDARG00000117625 983 0.85 - 0.850 - - - - - - -
18. nf1b ENSDARG00000004184 548 0.846 - 0.846 - - - - - - - neurofibromin 1b [Source:ZFIN;Acc:ZDB-GENE-091111-4]
19. COL23A1 COL23A1 461 0.845 - 0.845 - - - - - - -
20. mtif2 ENSDARG00000063213, ENSDARG00000113856 377 0.844 - 0.844 - - - - - - - mitochondrial translational initiation factor 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1092]
21. rpp25l ENSDARG00000070131 492 0.841 - 0.841 - - - - - - - ribonuclease P/MRP 25 subunit-like [Source:ZFIN;Acc:ZDB-GENE-040718-275]
22. mapkapk3 ENSDARG00000111612 370 0.838 - 0.838 - - - - - - - mitogen-activated protein kinase-activated protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-061215-124]
23. si:ch211-106h11.3 ENSDARG00000027360 154 0.837 - 0.837 - - - - - - - si:ch211-106h11.3 [Source:ZFIN;Acc:ZDB-GENE-050208-296]
24. cyp2ad3 ENSDARG00000022650 672 0.832 - 0.832 - - - - - - - cytochrome P450, family 2, subfamily AD, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-041001-156]
25. frs2b ENSDARG00000037353 544 0.832 - - - - - - 0.832 - - fibroblast growth factor receptor substrate 2b [Source:ZFIN;Acc:ZDB-GENE-040718-406]
26. mybbp1a ENSDARG00000078214 2458 0.828 - - - - - - 0.828 - - MYB binding protein (P160) 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9864]
27. sult2st3 ENSDARG00000028367 79 0.828 - 0.828 - - - - - - - sulfotransferase family 2, cytosolic sulfotransferase 3 [Source:ZFIN;Acc:ZDB-GENE-061117-4]
28. her4.1 ENSDARG00000056732 1264 0.827 - 0.827 - - - - - - - hairy-related 4, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-980526-521]
29. fem1b ENSDARG00000062636 474 0.826 - 0.826 - - - - - - - fem-1 homolog b (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-071009-3]
30. znf654 ENSDARG00000079350 978 0.826 - - - - - - 0.826 - - zinc finger protein 654 [Source:ZFIN;Acc:ZDB-GENE-030131-1423]
31. GRAMD4 GRAMD4 1967 0.823 - - - - - - 0.823 - -
32. iah1 ENSDARG00000015765 326 0.822 - 0.822 - - - - - - - isoamyl acetate hydrolyzing esterase 1 (putative) [Source:ZFIN;Acc:ZDB-GENE-041008-186]
33. CLCC1 155 0.82 - 0.820 - - - - - - - chloride channel CLIC-like 1, transcript variant X2
34. si:dkey-100n23.5 ENSDARG00000086911 427 0.82 - - - - - - 0.820 - - si:dkey-100n23.5 [Source:ZFIN;Acc:ZDB-GENE-070912-347]
35. zgc:55764 zgc:55764 645 0.819 - 0.819 - - - - - - -
36. arhgef10lb ENSDARG00000074244, ENSDARG00000117194 907 0.819 0.819 - - - - - - - - Rho guanine nucleotide exchange factor (GEF) 10-like b [Source:ZFIN;Acc:ZDB-GENE-090313-222]
37. CUL3 CUL3 1133 0.817 - - - - - - 0.817 - -
38. pou6f1 ENSDARG00000011570 1501 0.817 - 0.817 - - - - - - - POU class 6 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-530]
39. map9 ENSDARG00000037276, ENSDARG00000115648 581 0.817 - - - - - - 0.817 - - microtubule-associated protein 9 [Source:ZFIN;Acc:ZDB-GENE-080225-36]
40. flii ENSDARG00000059701 2290 0.816 - - - - - - 0.816 - - flightless I actin binding protein [Source:ZFIN;Acc:ZDB-GENE-071212-3]
41. gpatch2 1221 0.815 - - - - - - 0.815 - - G patch domain containing 2, transcript variant X1
42. ccdc51 ENSDARG00000058828 436 0.815 - - - - - - 0.815 - - coiled-coil domain containing 51 [Source:ZFIN;Acc:ZDB-GENE-060825-200]
43. PPIL3 ENSDARG00000033370 714 0.815 - 0.815 - - - - - - - peptidylprolyl isomerase (cyclophilin)-like 3 [Source:ZFIN;Acc:ZDB-GENE-040625-159]
44. RABGAP1 ENSDARG00000098967 933 0.814 - - - - - 0.814 - - - RAB GTPase activating protein 1 [Source:ZFIN;Acc:ZDB-GENE-170622-1]
45. fam98a ENSDARG00000078391, ENSDARG00000109752, ENSDARG00000110498 997 0.814 - 0.814 - - - - - - - family with sequence similarity 98, member A [Source:ZFIN;Acc:ZDB-GENE-091202-6]
46. znf143b ENSDARG00000041581, ENSDARG00000111018, ENSDARG00000112408 1140 0.812 - - - - - - 0.812 - - zinc finger protein 143b [Source:ZFIN;Acc:ZDB-GENE-040426-1586]
47. gcc1 ENSDARG00000045541 1821 0.812 - 0.812 - - - - - - - GRIP and coiled-coil domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-118]
48. RNF169 ENSDARG00000042825 727 0.812 - - - - - - 0.812 - - ring finger protein 169 [Source:ZFIN;Acc:ZDB-GENE-030131-4336]
49. CXXC5 CXXC5 1332 0.812 - - - - - - 0.812 - -
50. epb41l3b ENSDARG00000019917 9 0.811 - 0.811 - - - - - - - erythrocyte membrane protein band 4.1-like 3b [Source:ZFIN;Acc:ZDB-GENE-021106-1]
51. foxj2 ENSDARG00000057680 73 0.809 - 0.809 - - - - - - - forkhead box J2 [Source:ZFIN;Acc:ZDB-GENE-100922-240]
52. arfgap3 ENSDARG00000097583 1087 0.809 - 0.809 - - - - - - - ADP-ribosylation factor GTPase activating protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1]
53. BX649494.1 BX649494.1 195 0.808 - 0.808 - - - - - - -
54. si:ch1073-280h16.1 si:ch1073-280h16.1 229 0.807 - 0.807 - - - - - - -
55. pcf11 ENSDARG00000044625, ENSDARG00000114082 1885 0.806 - - - - - - 0.806 - - PCF11, cleavage and polyadenylation factor subunit [Source:ZFIN;Acc:ZDB-GENE-041114-175]
56. tubgcp3 ENSDARG00000029133, ENSDARG00000116225 525 0.806 - - - - - - 0.806 - - tubulin, gamma complex associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-030616-538]
57. gla ENSDARG00000036155, ENSDARG00000110713 228 0.806 - 0.806 - - - - - - - galactosidase, alpha [Source:ZFIN;Acc:ZDB-GENE-041010-207]
58. ptch1 ENSDARG00000016404, ENSDARG00000095859, ENSDARG00000116142 1113 0.805 - 0.805 - - - - - - - patched 1 [Source:ZFIN;Acc:ZDB-GENE-980526-196]
59. ccdc94 1417 0.802 - - - - - - 0.802 - - coiled-coil domain containing 94
60. smc4 ENSDARG00000038882 4373 0.801 - - - - - - 0.801 - - structural maintenance of chromosomes 4 [Source:ZFIN;Acc:ZDB-GENE-020419-21]
61. alkbh3 ENSDARG00000045606, ENSDARG00000097208 169 0.799 - 0.799 - - - - - - - alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase [Source:ZFIN;Acc:ZDB-GENE-040801-254]
62. FILIP1L 542 0.799 - - - - - - 0.799 - - filamin A interacting protein 1-like
63. hrh3 ENSDARG00000035942 32 0.799 - 0.799 - - - - - - - histamine receptor H3 [Source:ZFIN;Acc:ZDB-GENE-040724-204]
64. rgs3a ENSDARG00000099746 727 0.797 - - - - - - 0.797 - - regulator of G protein signaling 3a [Source:ZFIN;Acc:ZDB-GENE-040801-150]
65. usp37 ENSDARG00000040990 637 0.796 - 0.796 - - - - - - - ubiquitin specific peptidase 37 [Source:ZFIN;Acc:ZDB-GENE-061013-802]
66. btbd10a ENSDARG00000062674 1144 0.796 0.796 - - - - - - - - BTB (POZ) domain containing 10a [Source:ZFIN;Acc:ZDB-GENE-070410-41]
67. zgc:77486 ENSDARG00000013711, ENSDARG00000093978, ENSDARG00000111468, ENSDARG00000116962 139 0.795 - 0.795 - - - - - - - zgc:77486 [Source:ZFIN;Acc:ZDB-GENE-040426-2056]
68. akr1a1b ENSDARG00000052030, ENSDARG00000112549 2505 0.795 - - - - - - 0.795 - - aldo-keto reductase family 1, member A1b (aldehyde reductase) [Source:ZFIN;Acc:ZDB-GENE-050417-118]
69. ppp4r2b ENSDARG00000053447 2506 0.794 - - - - - - 0.794 - - protein phosphatase 4, regulatory subunit 2b [Source:ZFIN;Acc:ZDB-GENE-030131-3008]
70. fam193b ENSDARG00000102831 442 0.794 - 0.794 - - - - - - - family with sequence similarity 193, member B [Source:ZFIN;Acc:ZDB-GENE-111102-1]
71. scnm1 ENSDARG00000003027 256 0.794 - 0.794 - - - - - - - sodium channel modifier 1 [Source:ZFIN;Acc:ZDB-GENE-030131-415]
72. CAPN1 ENSDARG00000055338 683 0.793 - 0.793 - - - - - - - calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
73. DSN1 ENSDARG00000089922 269 0.792 - 0.792 - - - - - - - DSN1 homolog, MIS12 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-170110-2]
74. timm50 ENSDARG00000031098, ENSDARG00000109900 988 0.791 - - - - - - 0.791 - - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
75. pcmtl ENSDARG00000042848, ENSDARG00000110149 301 0.791 - 0.791 - - - - - - - l-isoaspartyl protein carboxyl methyltransferase, like [Source:ZFIN;Acc:ZDB-GENE-040426-1738]
76. cdt1 ENSDARG00000051854 206 0.79 - 0.790 - - - - - - - chromatin licensing and DNA replication factor 1 [Source:ZFIN;Acc:ZDB-GENE-070111-1]
77. trim13 ENSDARG00000010010, ENSDARG00000110876, ENSDARG00000114862 767 0.79 - - - - - - 0.790 - - tripartite motif containing 13 [Source:ZFIN;Acc:ZDB-GENE-050522-516]
78. ptrh1 ENSDARG00000098206, ENSDARG00000110279 1001 0.788 - 0.788 - - - - - - - peptidyl-tRNA hydrolase 1 homolog [Source:ZFIN;Acc:ZDB-GENE-050306-33]
79. SYMPK ENSDARG00000059553 1159 0.788 - 0.788 - - - - - - - symplekin [Source:ZFIN;Acc:ZDB-GENE-060526-361]
80. ARSJ ENSDARG00000077590 684 0.788 - 0.788 - - - - - - - arylsulfatase family, member J [Source:ZFIN;Acc:ZDB-GENE-111215-1]
81. tmed8 ENSDARG00000052390 469 0.788 0.788 - - - - - - - - transmembrane p24 trafficking protein 8 [Source:ZFIN;Acc:ZDB-GENE-050522-283]
82. ap3m2 ENSDARG00000016128 851 0.788 - 0.788 - - - - - - - adaptor related protein complex 3 subunit mu 2 [Source:ZFIN;Acc:ZDB-GENE-021022-2]
83. pafah1b2 ENSDARG00000035352, ENSDARG00000114404 664 0.786 - 0.786 - - - - - - - platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 [Source:ZFIN;Acc:ZDB-GENE-060526-43]
84. dcp2 ENSDARG00000104242 401 0.786 - 0.786 - - - - - - - decapping mRNA 2 [Source:ZFIN;Acc:ZDB-GENE-040426-851]
85. dennd3a ENSDARG00000078797 542 0.786 - - - - - - 0.786 - - DENN/MADD domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-091230-6]
86. tnpo3 ENSDARG00000045680 694 0.785 - 0.785 - - - - - - - transportin 3 [Source:ZFIN;Acc:ZDB-GENE-040426-708]
87. dhx8 ENSDARG00000054707 2088 0.785 - - - - - - 0.785 - - DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-050809-39]
88. cbx8a ENSDARG00000087327 361 0.784 - - - - - - 0.784 - - chromobox homolog 8a (Pc class homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040405-1]
89. FAM109B FAM109B 470 0.784 - - - - - - 0.784 - -
90. fbxo21 ENSDARG00000076611 466 0.784 - - - - - - 0.784 - - F-box protein 21 [Source:ZFIN;Acc:ZDB-GENE-100922-229]
91. trps1 ENSDARG00000104082 918 0.783 - 0.783 - - - - - - - trichorhinophalangeal syndrome I [Source:ZFIN;Acc:ZDB-GENE-030131-8404]
92. eif3d ENSDARG00000021257 1524 0.783 - - - - - - 0.783 - - eukaryotic translation initiation factor 3, subunit D [Source:ZFIN;Acc:ZDB-GENE-030131-8442]
93. ephx1l ephx1l 271 0.783 - 0.783 - - - - - - -
94. stim2 stim2 278 0.782 - 0.782 - - - - - - -
95. klf7b ENSDARG00000043821 1061 0.781 - - - - - - 0.781 - - Kruppel-like factor 7b [Source:ZFIN;Acc:ZDB-GENE-041014-171]
96. rock1 ENSDARG00000058993 2603 0.781 - - - - - 0.781 - - - Rho-associated, coiled-coil containing protein kinase 1 [Source:ZFIN;Acc:ZDB-GENE-100712-2]
97. negr1 ENSDARG00000021607 1051 0.777 - 0.777 - - - - - - - neuronal growth regulator 1 [Source:ZFIN;Acc:ZDB-GENE-040822-27]
98. cars2 ENSDARG00000078546 352 0.777 - - - - - 0.777 - - - cysteinyl-tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-5564]
99. ube3a ENSDARG00000055737 1874 0.777 - 0.777 - - - - - - - ubiquitin protein ligase E3A [Source:ZFIN;Acc:ZDB-GENE-041114-190]
100. frmd6 ENSDARG00000002332 2698 0.777 - - - - - - 0.777 - - FERM domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-354]

There are 312 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA