Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for arid3b

Gene Name Gene ID Reads Annotation
arid3b ENSDARG00000104034 16303 AT rich interactive domain 3B (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-070209-182]










Genes with expression patterns similar to arid3b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. arid3b ENSDARG00000104034 16303 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 AT rich interactive domain 3B (BRIGHT-like) [Source:ZFIN;Acc:ZDB-GENE-070209-182]
2. bcam ENSDARG00000090190 39912 3.412 - - 0.879 0.790 - - 0.819 - 0.924 basal cell adhesion molecule (Lutheran blood group) [Source:ZFIN;Acc:ZDB-GENE-060929-620]
3. txnipa ENSDARG00000036107 8863 2.32 - - 0.853 - - - 0.713 0.754 - thioredoxin interacting protein a [Source:ZFIN;Acc:ZDB-GENE-030804-10]
4. mob4 ENSDARG00000056085 17978 1.885 - - 0.886 - - - - - 0.999 MOB family member 4, phocein [Source:ZFIN;Acc:ZDB-GENE-040801-174]
5. kdelr2a ENSDARG00000005254 13871 1.778 - - 0.862 - - - 0.916 - - KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2a [Source:ZFIN;Acc:ZDB-GENE-030826-32]
6. tbc1d23 ENSDARG00000044357, ENSDARG00000109696 6272 1.751 - 0.752 - - - - - - 0.999 TBC1 domain family, member 23 [Source:ZFIN;Acc:ZDB-GENE-040426-1253]
7. lasp1 ENSDARG00000057867 18721 1.722 - - 0.884 - - - 0.838 - - LIM and SH3 protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1936]
8. col11a1b ENSDARG00000009014 9998 1.666 - - - - 0.705 - - - 0.961 collagen, type XI, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-070912-607]
9. KRTCAP2 ENSDARG00000070386 10103 1.649 - - 0.864 - - 0.785 - - - keratinocyte associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-060825-91]
10. CABZ01074130.1 ENSDARG00000105274 26501 1.608 - - 0.866 0.742 - - - - -
11. cxcl12b ENSDARG00000055100, ENSDARG00000113088 4476 1.606 - - - 0.773 0.833 - - - - chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1) [Source:ZFIN;Acc:ZDB-GENE-030721-1]
12. grhprb ENSDARG00000019986, ENSDARG00000109547 3233 1.595 - 0.742 - - - - 0.853 - - glyoxylate reductase/hydroxypyruvate reductase b [Source:ZFIN;Acc:ZDB-GENE-040426-1847]
13. aldh2.1 ENSDARG00000089924 2883 1.582 - 0.744 - - - - 0.838 - - aldehyde dehydrogenase 2 family member, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1262]
14. NID1 NID1 6192 1.581 - 0.740 0.841 - - - - - -
15. clint1a ENSDARG00000025535 4965 1.578 - 0.747 0.831 - - - - - - clathrin interactor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2590]
16. capn12 ENSDARG00000010758, ENSDARG00000116381 3116 1.577 - - 0.825 - - - 0.752 - - calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
17. AL929434.1 AL929434.1 3294 1.568 - 0.781 0.787 - - - - - -
18. mid1ip1a ENSDARG00000041051 5425 1.566 - - - - - 0.785 0.781 - - MID1 interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-990415-81]
19. c9 ENSDARG00000016319 3917 1.563 - - - - - 0.740 0.823 - - complement component 9 [Source:ZFIN;Acc:ZDB-GENE-050522-442]
20. arf4a ENSDARG00000045989, ENSDARG00000103858 2545 1.542 - 0.752 - - - 0.790 - - - ADP-ribosylation factor 4a [Source:ZFIN;Acc:ZDB-GENE-040801-109]
21. arpc4l ENSDARG00000058225 10107 1.541 - - 0.812 - - - 0.729 - - actin related protein 2/3 complex, subunit 4, like [Source:ZFIN;Acc:ZDB-GENE-040808-18]
22. fndc3ba ENSDARG00000078179 2753 1.539 - 0.744 0.795 - - - - - - fibronectin type III domain containing 3Ba [Source:ZFIN;Acc:ZDB-GENE-070510-1]
23. mapk12a ENSDARG00000042021 1573 1.534 - 0.754 0.780 - - - - - - mitogen-activated protein kinase 12a [Source:ZFIN;Acc:ZDB-GENE-990415-257]
24. CABZ01103862.1 ENSDARG00000109235 3223 1.533 - 0.749 0.784 - - - - - -
25. ak3 ENSDARG00000058226 3160 1.533 - 0.753 - - - 0.780 - - - adenylate kinase 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2142]
26. tiprl ENSDARG00000032353 1045 1.528 - 0.748 0.780 - - - - - - TIP41, TOR signaling pathway regulator-like (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1611]
27. lpp ENSDARG00000023578 3581 1.526 - - 0.746 - - 0.780 - - - LIM domain containing preferred translocation partner in lipoma [Source:ZFIN;Acc:ZDB-GENE-040426-918]
28. nr2f6a ENSDARG00000003607 4779 1.52 - 0.742 - - - 0.778 - - - nuclear receptor subfamily 2, group F, member 6a [Source:ZFIN;Acc:ZDB-GENE-030131-4362]
29. epn2 ENSDARG00000008377 5458 1.518 - 0.716 0.802 - - - - - - epsin 2 [Source:ZFIN;Acc:ZDB-GENE-071212-1]
30. TIFA TIFA 1519 1.516 - 0.738 0.778 - - - - - -
31. tfa ENSDARG00000016771 30517 1.511 - 0.755 - - - - 0.756 - - transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
32. cd9b ENSDARG00000016691 15573 1.506 - - 0.729 - - - 0.777 - - CD9 molecule b [Source:ZFIN;Acc:ZDB-GENE-040426-2768]
33. dctn3 ENSDARG00000041363 3351 1.504 - - 0.786 - 0.718 - - - - dynactin 3 (p22) [Source:ZFIN;Acc:ZDB-GENE-040704-65]
34. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 1.498 - - 0.715 - - 0.783 - - - cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
35. clcn3 ENSDARG00000003269, ENSDARG00000110064 2961 1.496 - - - - - 0.788 0.708 - - chloride channel 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1699]
36. pdap1b ENSDARG00000002967 2159 1.495 - 0.751 0.744 - - - - - - pdgfa associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-040426-942]
37. esf1 ENSDARG00000008740 1206 1.491 - - 0.787 - 0.704 - - - - ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4917]
38. eif3c ENSDARG00000016443 18003 1.488 - - - - 0.739 0.749 - - - eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
39. cldni ENSDARG00000054616, ENSDARG00000111133 16328 1.483 - - 0.761 - - - 0.722 - - claudin i [Source:ZFIN;Acc:ZDB-GENE-010328-9]
40. sdpra sdpra 4594 1.477 - - - - - 0.774 0.703 - -
41. prrc1 ENSDARG00000044304 1567 1.464 - 0.750 - - 0.714 - - - - proline-rich coiled-coil 1 [Source:ZFIN;Acc:ZDB-GENE-041024-9]
42. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.459 - 0.754 - - 0.705 - - - - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
43. MAP4K4 ENSDARG00000098670 4665 1.438 - 0.735 - - 0.703 - - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
44. celsr2 ENSDARG00000019726, ENSDARG00000094388 4002 0.999 - - - - - - - - 0.999 cadherin, EGF LAG seven-pass G-type receptor 2 [Source:ZFIN;Acc:ZDB-GENE-070122-2]
45. si:dkeyp-67e6.4 si:dkeyp-67e6.4 3680 0.999 - - - - - - - - 0.999
46. surf4 ENSDARG00000104647 4203 0.999 - - - - - - - - 0.999 surfeit gene 4 [Source:ZFIN;Acc:ZDB-GENE-040426-1426]
47. GJD2_1 GJD2_1 3045 0.999 - - - - - - - - 0.999
48. bcl7ba ENSDARG00000111877 3696 0.999 - - - - - - - - 0.999 BCL tumor suppressor 7Ba [Source:ZFIN;Acc:ZDB-GENE-040426-2193]
49. TMEM185A TMEM185A 5505 0.999 - - - - - - - - 0.999
50. KRT78 KRT78 10751 0.999 - - - - - - - - 0.999
51. si:ch211-156j22.4 ENSDARG00000094977 4350 0.999 - - - - - - - - 0.999 si:ch211-156j22.4 [Source:ZFIN;Acc:ZDB-GENE-030131-1968]
52. selt1a 9746 0.997 - - - - - - - - 0.997 selenoprotein T, 1a
53. chd7 ENSDARG00000075211 12085 0.997 - - - - - - - - 0.997 chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
54. si:ch211-218d20.13 si:ch211-218d20.13 5488 0.992 - - - - - 0.992 - - -
55. mccc2 ENSDARG00000017571 5635 0.991 - - - - - 0.991 - - - methylcrotonoyl-CoA carboxylase 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040426-2493]
56. dynll1 ENSDARG00000058454 33932 0.989 - - - - - - - - 0.989 dynein, light chain, LC8-type 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1961]
57. skib ENSDARG00000008034 6518 0.987 - - - - - - - - 0.987 v-ski avian sarcoma viral oncogene homolog b [Source:ZFIN;Acc:ZDB-GENE-990715-10]
58. chd4b ENSDARG00000025789 14299 0.986 - - - - - 0.986 - - - chromodomain helicase DNA binding protein 4b [Source:ZFIN;Acc:ZDB-GENE-030131-4532]
59. zgc:86709 ENSDARG00000110511, ENSDARG00000111417 22785 0.981 - - - - - - - - 0.981 zgc:86709 [Source:ZFIN;Acc:ZDB-GENE-040625-35]
60. ZFHX3 ENSDARG00000103057 7759 0.978 - - - - - - - - 0.978 zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
61. rps5 ENSDARG00000043453 91085 0.963 - - - - - - - - 0.963 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
62. CABZ01044814.2 CABZ01044814.2 25711 0.959 - - - - - - - - 0.959
63. rplp0 ENSDARG00000051783 88740 0.942 - - - - - - - - 0.942 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
64. faua ENSDARG00000099022 82901 0.938 - - - - - - - - 0.938 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
65. ppifb ENSDARG00000052842 3533 0.931 - - - - - - 0.931 - - peptidylprolyl isomerase Fb [Source:ZFIN;Acc:ZDB-GENE-051030-126]
66. RPL37A RPL37A 62256 0.922 - - - - - - - - 0.922
67. sec61g ENSDARG00000018637, ENSDARG00000117172 4899 0.909 - - - - - - 0.909 - - Sec61 translocon gamma subunit [Source:ZFIN;Acc:ZDB-GENE-040718-203]
68. TMEM179 ENSDARG00000013292 3452 0.902 - 0.902 - - - - - - - transmembrane protein 179 [Source:ZFIN;Acc:ZDB-GENE-040808-25]
69. ntd5 ENSDARG00000040944 4988 0.902 - - 0.902 - - - - - - ntl-dependent gene 5 [Source:ZFIN;Acc:ZDB-GENE-031030-7]
70. gskip ENSDARG00000038099 5059 0.901 - - - - - - 0.901 - - gsk3b interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2777]
71. zgc:193505 ENSDARG00000093584, ENSDARG00000109499 47304 0.901 - - - - - - - - 0.901 zgc:193505 [Source:ZFIN;Acc:ZDB-GENE-030131-7103]
72. FBXO34 ENSDARG00000071259 4707 0.9 - - - - - - 0.900 - - F-box protein 34 [Source:ZFIN;Acc:ZDB-GENE-030131-2194]
73. bri3bp ENSDARG00000010108 6295 0.9 - 0.900 - - - - - - - bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
74. nucb2a ENSDARG00000036299, ENSDARG00000112218 10499 0.899 - - - - - - 0.899 - - nucleobindin 2a [Source:ZFIN;Acc:ZDB-GENE-030826-14]
75. serpinb1l4 ENSDARG00000096888 10462 0.898 - - - - - - 0.898 - - serpin peptidase inhibitor, clade B (ovalbumin), member 1, like 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7169]
76. Sep-15 Sep-15 5644 0.894 - 0.894 - - - - - - -
77. ccng1 ENSDARG00000076667, ENSDARG00000110260 40792 0.888 - - - - - 0.888 - - - cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
78. kng1 ENSDARG00000022372, ENSDARG00000112486 2503 0.887 - - - - - - 0.887 - - kininogen 1 [Source:ZFIN;Acc:ZDB-GENE-041010-56]
79. lmna ENSDARG00000013415 1562 0.886 - - 0.886 - - - - - - lamin A [Source:ZFIN;Acc:ZDB-GENE-020424-3]
80. tram1 ENSDARG00000019137, ENSDARG00000109629 8309 0.878 - - - - - - 0.878 - - translocation associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-021011-1]
81. rab11ba ENSDARG00000041878 4651 0.873 - - - - - - 0.873 - - RAB11B, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-040426-2860]
82. hn1l hn1l 8861 0.869 - - - - - - 0.869 - -
83. tmem258 ENSDARG00000078785 9578 0.866 - - 0.866 - - - - - - transmembrane protein 258 [Source:ZFIN;Acc:ZDB-GENE-040426-1739]
84. kank1 kank1 2430 0.865 - 0.865 - - - - - - -
85. tmod2 ENSDARG00000002571 5119 0.863 - - - - - - 0.863 - - tropomodulin 2 [Source:ZFIN;Acc:ZDB-GENE-040912-185]
86. rac2 ENSDARG00000038010 5837 0.862 - - 0.862 - - - - - - Rac family small GTPase 2 [Source:ZFIN;Acc:ZDB-GENE-040625-27]
87. ecm2 ENSDARG00000071549 1527 0.861 - - 0.861 - - - - - - extracellular matrix protein 2, female organ and adipocyte specific [Source:ZFIN;Acc:ZDB-GENE-050208-651]
88. rplp1 ENSDARG00000021864 127841 0.861 - - - - - - - - 0.861 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
89. c8b ENSDARG00000039517 1731 0.861 - - - - - - 0.861 - - complement component 8, beta polypeptide [Source:ZFIN;Acc:ZDB-GENE-070912-163]
90. cast ENSDARG00000058693 15565 0.86 - - - - - - 0.860 - - calpastatin [Source:ZFIN;Acc:ZDB-GENE-050810-2]
91. nsa2 ENSDARG00000007708 6329 0.859 - - 0.859 - - - - - - NSA2 ribosome biogenesis homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-488]
92. ndufaf2 ENSDARG00000069286, ENSDARG00000114828 1563 0.858 - - 0.858 - - - - - - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:ZFIN;Acc:ZDB-GENE-040808-28]
93. psmb2 ENSDARG00000031511 4016 0.857 - - 0.857 - - - - - - proteasome subunit beta 2 [Source:ZFIN;Acc:ZDB-GENE-040718-353]
94. yif1a ENSDARG00000019636 2215 0.855 - - 0.855 - - - - - - Yip1 interacting factor homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-6922]
95. smad3a ENSDARG00000036096, ENSDARG00000117146 2668 0.851 - - 0.851 - - - - - - SMAD family member 3a [Source:ZFIN;Acc:ZDB-GENE-000509-3]
96. yap1 ENSDARG00000068401, ENSDARG00000112952 16365 0.848 - - - - - - 0.848 - - Yes-associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9710]
97. mfsd8 ENSDARG00000103235, ENSDARG00000115968 2067 0.848 - - - - - - 0.848 - - major facilitator superfamily domain containing 8 [Source:ZFIN;Acc:ZDB-GENE-060818-29]
98. oclnb ENSDARG00000003091 3729 0.845 - - - - - - 0.845 - - occludin b [Source:ZFIN;Acc:ZDB-GENE-041212-43]
99. calua ENSDARG00000045676 16674 0.845 - - 0.845 - - - - - - calumenin a [Source:ZFIN;Acc:ZDB-GENE-040625-166]
100. jupa ENSDARG00000070787, ENSDARG00000112777 20968 0.845 - - - - - - 0.845 - - junction plakoglobin a [Source:ZFIN;Acc:ZDB-GENE-991207-22]

There are 704 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA