Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for arhgef4

Gene Name Gene ID Reads Annotation
arhgef4 ENSDARG00000012914 1464 Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]










Genes with expression patterns similar to arhgef4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. arhgef4 ENSDARG00000012914 1464 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Rho guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-575]
2. cks2 ENSDARG00000071410, ENSDARG00000116198 966 2.472 - 0.914 - - - - 0.760 - 0.798 CDC28 protein kinase regulatory subunit 2 [Source:ZFIN;Acc:ZDB-GENE-050208-508]
3. ubl3b ENSDARG00000021556 1210 2.425 - 0.788 - - - - - 0.774 0.863 ubiquitin-like 3b [Source:ZFIN;Acc:ZDB-GENE-040630-4]
4. DDX47_1 DDX47_1 453 2.408 - 0.808 - - - 0.743 - - 0.857
5. cwc22 ENSDARG00000014008 2385 2.404 - 0.801 - - - - 0.775 - 0.828 CWC22 spliceosome-associated protein homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060929-452]
6. ppm1da ENSDARG00000009273 7713 2.243 - - - - - 0.704 0.777 - 0.762 protein phosphatase, Mg2+/Mn2+ dependent, 1Da [Source:ZFIN;Acc:ZDB-GENE-040426-815]
7. pip5k1ab ENSDARG00000024642 1988 2.238 - 0.713 - - - - 0.772 0.753 - phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b [Source:ZFIN;Acc:ZDB-GENE-041111-123]
8. si:zfos-2269b6.1 si:zfos-2269b6.1 319 2.167 - 0.705 - - - 0.757 0.705 - -
9. dvl3a ENSDARG00000015707 1132 1.688 - 0.839 - - - - - - 0.849 dishevelled segment polarity protein 3a [Source:ZFIN;Acc:ZDB-GENE-010319-1]
10. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.686 - - - - - 0.786 - - 0.900 ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
11. eif4e3 ENSDARG00000005078 1624 1.668 - 0.829 - - - - - - 0.839 eukaryotic translation initiation factor 4E family member 3 [Source:ZFIN;Acc:ZDB-GENE-040912-156]
12. ptprk ENSDARG00000063416 742 1.661 - 0.815 - - - - - - 0.846 protein tyrosine phosphatase, receptor type, K [Source:ZFIN;Acc:ZDB-GENE-030131-9834]
13. mrps18b ENSDARG00000007065 2121 1.65 - 0.806 - - - - - - 0.844 mitochondrial ribosomal protein S18B [Source:ZFIN;Acc:ZDB-GENE-050417-278]
14. TRIP10 TRIP10 1079 1.644 - - - - - - 0.793 - 0.851
15. supt6h ENSDARG00000006524 3221 1.642 - 0.818 - - - - - - 0.824 SPT6 homolog, histone chaperone [Source:ZFIN;Acc:ZDB-GENE-030131-7949]
16. arid4a ENSDARG00000043873 4176 1.639 - - - - - 0.831 - - 0.808 AT rich interactive domain 4A (RBP1-like) [Source:ZFIN;Acc:ZDB-GENE-050809-105]
17. si:dkey-153k10.9 ENSDARG00000004386, ENSDARG00000109564, ENSDARG00000111507 319 1.634 - - - - - - - 0.786 0.848 si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
18. pdzrn3b ENSDARG00000073869 1566 1.626 - 0.783 - - - - - - 0.843 PDZ domain containing RING finger 3b [Source:ZFIN;Acc:ZDB-GENE-071022-4]
19. clasp1a ENSDARG00000010280 1158 1.624 - 0.850 - - - - - 0.774 - cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
20. ubald2 ENSDARG00000115335 1056 1.622 - 0.909 - - - 0.713 - - - UBA-like domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-050522-185]
21. kif26aa ENSDARG00000042368 674 1.622 - 0.857 - - - - - 0.765 - kinesin family member 26Aa [Source:ZFIN;Acc:ZDB-GENE-041001-148]
22. asb8 ENSDARG00000003383 733 1.622 - 0.823 - - - - - 0.799 - ankyrin repeat and SOCS box containing 8 [Source:ZFIN;Acc:ZDB-GENE-030131-5411]
23. TAF2 ENSDARG00000102307 1401 1.621 - 0.752 - - - - - - 0.869 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
24. igf2bp2a ENSDARG00000003421 2810 1.615 - 0.806 - - - - - - 0.809 insulin-like growth factor 2 mRNA binding protein 2a [Source:ZFIN;Acc:ZDB-GENE-070912-44]
25. camlg ENSDARG00000100409 2157 1.608 - 0.804 - - - - 0.804 - - calcium modulating ligand [Source:ZFIN;Acc:ZDB-GENE-040426-2407]
26. cdc34b ENSDARG00000012627 3879 1.608 - - - - - - 0.787 - 0.821 cell division cycle 34 homolog (S. cerevisiae) b [Source:ZFIN;Acc:ZDB-GENE-040718-439]
27. pes ENSDARG00000018902 3286 1.605 - 0.770 - - - - - - 0.835 pescadillo [Source:ZFIN;Acc:ZDB-GENE-990415-206]
28. efna5a ENSDARG00000089790 1007 1.598 - - - - - - - 0.719 0.879 ephrin-A5a [Source:ZFIN;Acc:ZDB-GENE-001128-1]
29. rbm45 ENSDARG00000063731 504 1.597 - - - - - - 0.739 - 0.858 RNA binding motif protein 45 [Source:ZFIN;Acc:ZDB-GENE-070122-4]
30. paip2b ENSDARG00000008706 4255 1.597 - 0.715 - - - - 0.882 - - poly(A) binding protein interacting protein 2B [Source:ZFIN;Acc:ZDB-GENE-040426-1736]
31. caly ENSDARG00000036008 1002 1.596 - - - - - - - 0.722 0.874 calcyon neuron-specific vesicular protein [Source:ZFIN;Acc:ZDB-GENE-090313-405]
32. hdac4 ENSDARG00000098349 1370 1.596 - 0.779 - - - - - - 0.817 histone deacetylase 4 [Source:ZFIN;Acc:ZDB-GENE-061013-95]
33. soga1 ENSDARG00000063075 1066 1.594 - - - - - 0.723 - - 0.871 suppressor of glucose, autophagy associated 1 [Source:ZFIN;Acc:ZDB-GENE-090313-188]
34. gdi1 ENSDARG00000056122 4106 1.592 - - - - - - 0.719 - 0.873 GDP dissociation inhibitor 1 [Source:ZFIN;Acc:ZDB-GENE-050522-504]
35. eps15l1a ENSDARG00000042670 1565 1.584 - - - - - - - 0.743 0.841 epidermal growth factor receptor pathway substrate 15-like 1a [Source:ZFIN;Acc:ZDB-GENE-060503-274]
36. pdcd11 ENSDARG00000052480 2791 1.584 - - - - - - - 0.736 0.848 programmed cell death 11 [Source:ZFIN;Acc:ZDB-GENE-030131-4076]
37. phactr4b ENSDARG00000032221 1389 1.583 - 0.773 - - - - - 0.810 - phosphatase and actin regulator 4b [Source:ZFIN;Acc:ZDB-GENE-040426-1131]
38. RBM12B ENSDARG00000079717 541 1.582 - 0.712 - - - - - - 0.870 RNA binding motif protein 12B [Source:ZFIN;Acc:ZDB-GENE-030131-6428]
39. u2af2b ENSDARG00000011740 6946 1.582 - - - - - 0.754 - - 0.828 U2 small nuclear RNA auxiliary factor 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1881]
40. pcnt ENSDARG00000033012 664 1.578 - 0.848 - - - - 0.730 - - pericentrin [Source:ZFIN;Acc:ZDB-GENE-030829-26]
41. sertad2a ENSDARG00000093412 503 1.575 - 0.809 - - - - - 0.766 - SERTA domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-050309-236]
42. sdad1 ENSDARG00000105117 2819 1.574 - - - - - - - 0.744 0.830 SDA1 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-021213-1]
43. RAPGEFL1 ENSDARG00000079912 1074 1.571 - - - - - - 0.723 0.848 - Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:ZFIN;Acc:ZDB-GENE-131121-404]
44. sh3rf1 ENSDARG00000070470 1463 1.568 - 0.819 - - - - 0.749 - - SH3 domain containing ring finger 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6288]
45. CASK CASK 1750 1.566 - - - - - - 0.780 - 0.786
46. ndc1 ENSDARG00000021120 2417 1.566 - - - - - 0.787 - 0.779 - NDC1 transmembrane nucleoporin [Source:ZFIN;Acc:ZDB-GENE-030131-7176]
47. rbm39b ENSDARG00000041853 1421 1.562 - - - - - 0.748 - 0.814 - RNA binding motif protein 39b [Source:ZFIN;Acc:ZDB-GENE-050327-97]
48. mcts1 ENSDARG00000025972 4662 1.562 - - - - - - 0.746 - 0.816 malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
49. mbd3a ENSDARG00000061774 4047 1.559 0.786 0.773 - - - - - - - methyl-CpG binding domain protein 3a [Source:ZFIN;Acc:ZDB-GENE-030131-9077]
50. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 1.559 - - - - - 0.743 - - 0.816 target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
51. col12a1a ENSDARG00000078322 1833 1.556 - - - - - 0.764 - - 0.792 collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
52. hug 4100 1.556 - - - - - - 0.749 - 0.807 HuG, transcript variant X2
53. bnip3la ENSDARG00000025468 3097 1.556 - - - - - 0.777 - - 0.779 BCL2 interacting protein 3 like a [Source:ZFIN;Acc:ZDB-GENE-030131-2283]
54. rgl1 ENSDARG00000005989, ENSDARG00000114367 2501 1.55 - 0.765 - - - - - - 0.785 ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
55. si:ch211-288g17.3 ENSDARG00000070959 2425 1.549 - 0.755 - - - - - - 0.794 si:ch211-288g17.3 [Source:ZFIN;Acc:ZDB-GENE-030131-461]
56. b4galt6 ENSDARG00000010301 2005 1.546 - 0.709 - - - - - - 0.837 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6 [Source:ZFIN;Acc:ZDB-GENE-040426-789]
57. tmem248 ENSDARG00000018825 1560 1.544 - 0.759 - - - - - - 0.785 transmembrane protein 248 [Source:ZFIN;Acc:ZDB-GENE-050320-103]
58. ablim1b ENSDARG00000045064, ENSDARG00000111454, ENSDARG00000112629 2672 1.543 - - - - - - 0.800 0.743 - actin binding LIM protein 1b [Source:ZFIN;Acc:ZDB-GENE-050327-91]
59. FRG1 ENSDARG00000056504 1196 1.538 - - - - - - 0.728 - 0.810 FSHD region gene 1 [Source:ZFIN;Acc:ZDB-GENE-050417-324]
60. CABZ01087568.1 CABZ01087568.1 1487 1.537 - - - - - 0.715 - - 0.822
61. lamtor3 ENSDARG00000057075 2282 1.536 - - - - - 0.741 - - 0.795 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 [Source:ZFIN;Acc:ZDB-GENE-050522-345]
62. znf598 ENSDARG00000014945 1838 1.535 - 0.796 - - - - - 0.739 - zinc finger protein 598 [Source:ZFIN;Acc:ZDB-GENE-060602-3]
63. lin37 ENSDARG00000053950 1003 1.532 - 0.784 - - - 0.748 - - - lin-37 DREAM MuvB core complex component [Source:ZFIN;Acc:ZDB-GENE-050417-446]
64. PHB2 PHB2 3755 1.526 - 0.706 - - - - - - 0.820
65. zgc:66475 ENSDARG00000099519 1348 1.523 - 0.807 - - - 0.716 - - - zgc:66475 [Source:ZFIN;Acc:ZDB-GENE-040426-1644]
66. ndufa6 ENSDARG00000038028 2653 1.522 - 0.769 - - - - - - 0.753 NADH:ubiquinone oxidoreductase subunit A6 [Source:ZFIN;Acc:ZDB-GENE-040426-1124]
67. ube2g1b ENSDARG00000069527 5376 1.522 - 0.750 - - - 0.772 - - - ubiquitin-conjugating enzyme E2G 1b (UBC7 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-040426-2939]
68. RNASEH2C ENSDARG00000089637 1673 1.522 - - - - - 0.750 - - 0.772 ribonuclease H2, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-2469]
69. ssb ENSDARG00000029252 3394 1.517 - 0.709 - - - - - - 0.808 Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
70. wdr33 ENSDARG00000018272 4076 1.515 0.755 0.760 - - - - - - - WD repeat domain 33 [Source:ZFIN;Acc:ZDB-GENE-040924-3]
71. tbc1d12a ENSDARG00000038237 698 1.515 - - - - - - 0.741 0.774 - TBC1 domain family, member 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3920]
72. tspan14 ENSDARG00000055938, ENSDARG00000117111 4518 1.511 - - - - - 0.783 0.728 - - tetraspanin 14 [Source:ZFIN;Acc:ZDB-GENE-060825-329]
73. supt5h ENSDARG00000042724, ENSDARG00000111598 6419 1.509 - - - - - 0.702 - - 0.807 SPT5 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-001207-1]
74. epb41l4a ENSDARG00000040087 1013 1.508 - - - - - 0.769 0.739 - - erythrocyte membrane protein band 4.1 like 4A [Source:ZFIN;Acc:ZDB-GENE-990415-20]
75. ccdc101 ccdc101 778 1.505 - 0.794 - - - 0.711 - - -
76. msh2 ENSDARG00000018022, ENSDARG00000115185 1301 1.503 - - - - - 0.713 - 0.790 - mutS homolog 2 (E. coli) [Source:ZFIN;Acc:ZDB-GENE-040426-2932]
77. kdm6bb ENSDARG00000056929 4807 1.502 - 0.714 - - - - 0.788 - - lysine (K)-specific demethylase 6B, b [Source:ZFIN;Acc:ZDB-GENE-040724-166]
78. cars ENSDARG00000036164 2019 1.499 - 0.760 - - - - - - 0.739 cysteinyl-tRNA synthetase [Source:ZFIN;Acc:ZDB-GENE-030328-29]
79. gstal gstal 1865 1.498 - - - - - 0.730 - - 0.768
80. kdm5c ENSDARG00000006124 4389 1.495 - - - - - - 0.771 - 0.724 lysine (K)-specific demethylase 5C [Source:ZFIN;Acc:ZDB-GENE-060810-94]
81. tomm22 ENSDARG00000045146, ENSDARG00000109761 3545 1.495 0.712 - - - - - - - 0.783 translocase of outer mitochondrial membrane 22 homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-030131-9810]
82. smc4 ENSDARG00000038882 4373 1.492 - - - - - 0.715 0.777 - - structural maintenance of chromosomes 4 [Source:ZFIN;Acc:ZDB-GENE-020419-21]
83. foxa1 ENSDARG00000102138 1797 1.487 - 0.739 - - - - - - 0.748 forkhead box A1 [Source:ZFIN;Acc:ZDB-GENE-990415-78]
84. stmn4 ENSDARG00000030106 518 1.484 - 0.705 - - - - - 0.779 - stathmin-like 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2732]
85. asxl1 ENSDARG00000036956, ENSDARG00000115751 2955 1.482 - - - - - 0.746 - - 0.736 ASXL transcriptional regulator 1 [Source:ZFIN;Acc:ZDB-GENE-091116-9]
86. grb2b ENSDARG00000038059 9050 1.481 - - - - - 0.766 0.715 - - growth factor receptor-bound protein 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1975]
87. frmd6 ENSDARG00000002332 2698 1.48 - 0.764 - - - - 0.716 - - FERM domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-050522-354]
88. si:dkey-100n23.5 ENSDARG00000086911 427 1.48 - - - - - 0.756 0.724 - - si:dkey-100n23.5 [Source:ZFIN;Acc:ZDB-GENE-070912-347]
89. slit3 ENSDARG00000034268, ENSDARG00000111488, ENSDARG00000115194 3999 1.48 - 0.725 - - - 0.755 - - - slit homolog 3 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-4]
90. hgs ENSDARG00000020960 3574 1.477 - 0.736 - - - - - - 0.741 hepatocyte growth factor-regulated tyrosine kinase substrate [Source:ZFIN;Acc:ZDB-GENE-030131-6107]
91. yy1a ENSDARG00000042796 4982 1.476 - - - - - 0.729 0.747 - - YY1 transcription factor a [Source:ZFIN;Acc:ZDB-GENE-030131-1117]
92. hsbp1a ENSDARG00000069425 1086 1.474 - 0.753 - - - - 0.721 - - heat shock factor binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-050320-136]
93. EEF1E1 ENSDARG00000071774 3806 1.471 0.718 0.753 - - - - - - - eukaryotic translation elongation factor 1 epsilon 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4949]
94. RBM26 ENSDARG00000104130 1012 1.471 0.727 0.744 - - - - - - - RNA binding motif protein 26 [Source:ZFIN;Acc:ZDB-GENE-050706-50]
95. srebf1 ENSDARG00000067607 1537 1.47 - 0.703 - - - - - - 0.767 sterol regulatory element binding transcription factor 1 [Source:ZFIN;Acc:ZDB-GENE-090812-3]
96. clpxa ENSDARG00000029063 1188 1.467 - - - - - 0.747 0.720 - - caseinolytic mitochondrial matrix peptidase chaperone subunit a [Source:ZFIN;Acc:ZDB-GENE-040912-143]
97. LEPROTL1 ENSDARG00000104871 3019 1.458 0.732 - - - - - - - 0.726 leptin receptor overlapping transcript like 1 [Source:HGNC Symbol;Acc:HGNC:6555]
98. timm50 ENSDARG00000031098, ENSDARG00000109900 988 1.457 - 0.756 - - - - 0.701 - - translocase of inner mitochondrial membrane 50 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1618]
99. mfn1b ENSDARG00000079219 1699 1.447 0.744 0.703 - - - - - - - mitofusin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1553]
100. SPEN ENSDARG00000074245, ENSDARG00000116696 1412 1.438 - - - - - 0.733 - 0.705 - spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]

There are 1455 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA