Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for arhgef1b

Gene Name Gene ID Reads Annotation
arhgef1b ENSDARG00000055837 2330 Rho guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-060616-136]










Genes with expression patterns similar to arhgef1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. arhgef1b ENSDARG00000055837 2330 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Rho guanine nucleotide exchange factor (GEF) 1b [Source:ZFIN;Acc:ZDB-GENE-060616-136]
2. cdc42se1 ENSDARG00000023724 3901 2.65 - 0.953 - - 0.938 - 0.759 - - CDC42 small effector 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9260]
3. anapc16 ENSDARG00000013822 5857 2.49 0.823 0.955 - - - - 0.712 - - anaphase promoting complex subunit 16 [Source:ZFIN;Acc:ZDB-GENE-050417-430]
4. nfil3 ENSDARG00000042977, ENSDARG00000110085 1565 2.464 0.746 0.957 - - - - 0.761 - - nuclear factor, interleukin 3 regulated [Source:ZFIN;Acc:ZDB-GENE-040822-28]
5. bcat2 ENSDARG00000054849 4317 2.191 0.733 - - - - 0.700 - - 0.758 branched chain amino-acid transaminase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-040718-425]
6. farp1 ENSDARG00000074381 406 1.936 - 0.965 - - 0.971 - - - - FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) [Source:ZFIN;Acc:ZDB-GENE-070424-163]
7. amot ENSDARG00000078335 1757 1.898 - 0.961 - - 0.937 - - - - angiomotin [Source:ZFIN;Acc:ZDB-GENE-030131-7487]
8. CNOT2 ENSDARG00000061802 1500 1.897 - 0.956 - - 0.941 - - - - CCR4-NOT transcription complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070410-70]
9. rcn1 ENSDARG00000070006 8455 1.881 - 0.950 - - 0.931 - - - - reticulocalbin 1, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-080225-33]
10. wu:fb12e11 wu:fb12e11 2332 1.845 0.879 0.966 - - - - - - -
11. nop16 ENSDARG00000044402 3645 1.793 - 0.965 - - 0.828 - - - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
12. GATAD2B ENSDARG00000005834 3855 1.766 0.804 0.962 - - - - - - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
13. rhoad rhoad 8007 1.762 - 0.946 - - 0.816 - - - -
14. suds3 ENSDARG00000073737, ENSDARG00000116918 2416 1.759 0.775 0.984 - - - - - - - SDS3 homolog, SIN3A corepressor complex component [Source:ZFIN;Acc:ZDB-GENE-040801-236]
15. arfrp1 ENSDARG00000057857 2840 1.751 0.817 - - - 0.934 - - - - ADP-ribosylation factor related protein 1 [Source:ZFIN;Acc:ZDB-GENE-050227-14]
16. rassf10a 417 1.746 0.776 - - - 0.970 - - - - Ras association (RalGDS/AF-6) domain family (N-terminal) member 10a
17. atg16l1 ENSDARG00000099430 924 1.742 0.784 0.958 - - - - - - - ATG16 autophagy related 16-like 1 (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050417-401]
18. arl4cb ENSDARG00000032708, ENSDARG00000110274 2769 1.74 0.787 - - - 0.953 - - - - ADP-ribosylation factor-like 4Cb [Source:ZFIN;Acc:ZDB-GENE-040426-2382]
19. hgs ENSDARG00000020960 3574 1.736 - - - - 0.943 - 0.793 - - hepatocyte growth factor-regulated tyrosine kinase substrate [Source:ZFIN;Acc:ZDB-GENE-030131-6107]
20. klf3 ENSDARG00000015495, ENSDARG00000114143 1640 1.734 0.744 0.990 - - - - - - - Kruppel-like factor 3 (basic) [Source:ZFIN;Acc:ZDB-GENE-011116-1]
21. utp3 ENSDARG00000056720 922 1.728 0.769 - - - 0.959 - - - - UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040912-163]
22. gng5 ENSDARG00000039830 12102 1.723 - 0.866 - - - - 0.857 - - guanine nucleotide binding protein (G protein), gamma 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9966]
23. smc3 ENSDARG00000019000, ENSDARG00000112055 6553 1.718 - 0.954 - - 0.764 - - - - structural maintenance of chromosomes 3 [Source:ZFIN;Acc:ZDB-GENE-030131-3196]
24. eif2d ENSDARG00000012929 2624 1.716 - - - 0.750 0.966 - - - - eukaryotic translation initiation factor 2D [Source:ZFIN;Acc:ZDB-GENE-040426-1226]
25. ugt1ab 545 1.714 0.810 0.904 - - - - - - - UDP glucuronosyltransferase 1 family a, b
26. slc3a2a ENSDARG00000036427, ENSDARG00000112231 2967 1.71 0.767 0.943 - - - - - - - solute carrier family 3 (amino acid transporter heavy chain), member 2a [Source:ZFIN;Acc:ZDB-GENE-000831-3]
27. ddx49 ENSDARG00000012899 1604 1.702 0.749 - - - 0.953 - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Source:ZFIN;Acc:ZDB-GENE-031030-3]
28. snx5 ENSDARG00000020442 2463 1.701 - - - - 0.941 0.760 - - - sorting nexin 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2857]
29. dse ENSDARG00000017988 2169 1.699 - 0.982 - - - - 0.717 - - dermatan sulfate epimerase [Source:ZFIN;Acc:ZDB-GENE-041001-202]
30. mboat2a ENSDARG00000031845 1255 1.69 - - - - 0.969 - 0.721 - - membrane bound O-acyltransferase domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-041210-257]
31. chmp2bb ENSDARG00000002190 4629 1.687 - 0.916 - - - - 0.771 - - charged multivesicular body protein 2Bb [Source:ZFIN;Acc:ZDB-GENE-040426-2539]
32. tmem176l.1 ENSDARG00000099491 860 1.686 - - - - 0.960 0.726 - - - transmembrane protein 176l.1 [Source:ZFIN;Acc:ZDB-GENE-080829-11]
33. pdia5 ENSDARG00000069242 3576 1.685 - 0.956 - - - - 0.729 - - protein disulfide isomerase family A, member 5 [Source:ZFIN;Acc:ZDB-GENE-030521-5]
34. CABZ01103862.1 ENSDARG00000109235 3223 1.684 - 0.928 - - - - 0.756 - -
35. zgc:101858 ENSDARG00000035129 1393 1.68 - 0.957 - - - 0.723 - - - zgc:101858 [Source:ZFIN;Acc:ZDB-GENE-040927-13]
36. agpat4 ENSDARG00000069044 4487 1.68 - - - - 0.838 - 0.842 - - 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta) [Source:ZFIN;Acc:ZDB-GENE-040426-1924]
37. bloc1s6 ENSDARG00000042933 2978 1.677 - 0.891 - - - 0.786 - - - biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:ZFIN;Acc:ZDB-GENE-070112-1862]
38. rrp7a ENSDARG00000098934 1123 1.674 0.844 - - - 0.830 - - - - ribosomal RNA processing 7 homolog A [Source:ZFIN;Acc:ZDB-GENE-050417-38]
39. sdc2 ENSDARG00000002731 6607 1.661 - - - - 0.889 0.772 - - - syndecan 2 [Source:ZFIN;Acc:ZDB-GENE-021206-3]
40. eps8l1 1598 1.652 0.883 - - - - - 0.769 - - eps8-like1, transcript variant X3
41. nt5c2b ENSDARG00000058231 3822 1.65 - 0.870 - - - - 0.780 - - 5'-nucleotidase, cytosolic IIb [Source:ZFIN;Acc:ZDB-GENE-061013-522]
42. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.645 - 0.939 - - - - 0.706 - - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
43. zgc:110333 ENSDARG00000040628 3250 1.635 - 0.836 - - - - 0.799 - - zgc:110333 [Source:ZFIN;Acc:ZDB-GENE-050417-331]
44. ehd3 ENSDARG00000007869 3238 1.632 0.712 - - - 0.920 - - - - EH-domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-041014-352]
45. si:ch211-161h7.4 ENSDARG00000087238 4399 1.623 0.781 - - - 0.842 - - - - si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
46. wls ENSDARG00000009534 8719 1.621 - 0.908 - - - - 0.713 - - wntless Wnt ligand secretion mediator [Source:ZFIN;Acc:ZDB-GENE-040426-2161]
47. fubp1 ENSDARG00000029248 15259 1.621 - 0.849 - - 0.772 - - - - far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
48. zmpste24 ENSDARG00000044090, ENSDARG00000115387 3873 1.616 - - - - 0.896 - 0.720 - - zinc metallopeptidase, STE24 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-6312]
49. sdc4 ENSDARG00000059906 10105 1.614 - - - - 0.905 - 0.709 - - syndecan 4 [Source:ZFIN;Acc:ZDB-GENE-061111-1]
50. arrb2b ENSDARG00000011545 3126 1.61 - - - - 0.909 0.701 - - - arrestin, beta 2b [Source:ZFIN;Acc:ZDB-GENE-040426-1332]
51. SIRT5 ENSDARG00000039684 1124 1.608 0.877 - - - - - 0.731 - - sirtuin 5 [Source:ZFIN;Acc:ZDB-GENE-040718-349]
52. si:dkey-95p16.2 ENSDARG00000093484 3413 1.608 - - - - 0.835 - 0.773 - - si:dkey-95p16.2 [Source:ZFIN;Acc:ZDB-GENE-081105-65]
53. vps25 ENSDARG00000059079 3747 1.607 - 0.796 - - - - 0.811 - - vacuolar protein sorting 25 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-30]
54. CD99L2 ENSDARG00000056722 5588 1.606 - 0.852 - - - - 0.754 - - CD99 molecule-like 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1986]
55. clint1a ENSDARG00000025535 4965 1.602 - 0.864 - - - - - - 0.738 clathrin interactor 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2590]
56. itgb1b.1 ENSDARG00000053232 4721 1.597 0.840 - - - - - 0.757 - - integrin, beta 1b.1 [Source:ZFIN;Acc:ZDB-GENE-060803-3]
57. p4ha1b ENSDARG00000071082, ENSDARG00000112774 3198 1.596 0.842 - - - - 0.754 - - - prolyl 4-hydroxylase, alpha polypeptide I b [Source:ZFIN;Acc:ZDB-GENE-030131-4089]
58. pmela ENSDARG00000091298 5179 1.59 0.751 - - - 0.839 - - - - premelanosome protein a [Source:ZFIN;Acc:ZDB-GENE-030131-9818]
59. copz1 ENSDARG00000017844 7277 1.586 0.838 - - - - 0.748 - - - coatomer protein complex, subunit zeta 1 [Source:ZFIN;Acc:ZDB-GENE-000406-6]
60. itgb4 ENSDARG00000028507 2568 1.582 0.868 - - - - - 0.714 - - integrin, beta 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7209]
61. ube2h ENSDARG00000000019 9900 1.58 - 0.856 - - - - 0.724 - - ubiquitin-conjugating enzyme E2H (UBC8 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-030616-67]
62. ggnbp2 ENSDARG00000055086 1419 1.578 0.797 - - - - - 0.781 - - gametogenetin binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-060929-52]
63. OMG OMG 1202 1.573 0.816 - - - - - 0.757 - -
64. OTTDARG00000032278 OTTDARG00000032278 1016 1.572 0.812 - - - - - 0.760 - -
65. degs2 ENSDARG00000042544 1912 1.57 0.869 - - - - - 0.701 - - delta(4)-desaturase, sphingolipid 2 [Source:ZFIN;Acc:ZDB-GENE-080228-1]
66. PHLDB2 PHLDB2 1164 1.57 0.868 - - - - 0.702 - - -
67. EPHA2 EPHA2 867 1.563 0.842 - - - - - 0.721 - -
68. ACTN4_1 ACTN4_1 8550 1.561 - - - - 0.840 0.721 - - -
69. emilin1b ENSDARG00000026166 1530 1.556 0.820 - - - - 0.736 - - - elastin microfibril interfacer 1b [Source:ZFIN;Acc:ZDB-GENE-060818-36]
70. sqstm1 ENSDARG00000075014 2392 1.552 0.831 - - - - - 0.721 - - sequestosome 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2204]
71. aldh4a1 ENSDARG00000038207 4639 1.551 - 0.851 - - - 0.700 - - - aldehyde dehydrogenase 4 family, member A1 [Source:ZFIN;Acc:ZDB-GENE-040426-1179]
72. ube2kb ENSDARG00000013505, ENSDARG00000114039 3968 1.551 - - - - - 0.724 0.827 - - ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-980605-9]
73. shc1 ENSDARG00000075437 3278 1.536 0.786 - - - - - 0.750 - - SHC (Src homology 2 domain containing) transforming protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2538]
74. gpx8 ENSDARG00000013302 1427 1.522 0.811 - - - - - - - 0.711 glutathione peroxidase 8 (putative) [Source:ZFIN;Acc:ZDB-GENE-040426-965]
75. pgd ENSDARG00000015343, ENSDARG00000117150 2512 1.513 - - - - - 0.724 0.789 - - phosphogluconate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-040426-2807]
76. fbl ENSDARG00000053912 5891 1.512 0.770 - - - 0.742 - - - - fibrillarin [Source:ZFIN;Acc:ZDB-GENE-040426-1936]
77. arcn1a ENSDARG00000002792 2847 1.507 0.807 - - - - - 0.700 - - archain 1a [Source:ZFIN;Acc:ZDB-GENE-021031-2]
78. zgc:92360 ENSDARG00000038151 2161 1.505 - - - - - - 0.777 - 0.728 zgc:92360 [Source:ZFIN;Acc:ZDB-GENE-040718-470]
79. huwe1 ENSDARG00000016782 6493 1.502 0.715 - - - - 0.787 - - - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
80. agpat5 ENSDARG00000063187 1315 1.501 0.772 - - - - - 0.729 - - 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon) [Source:ZFIN;Acc:ZDB-GENE-060929-914]
81. exosc1 ENSDARG00000059841 6895 1.499 - - - - - 0.763 0.736 - - exosome component 1 [Source:ZFIN;Acc:ZDB-GENE-080926-3]
82. twist1a ENSDARG00000030402 3748 1.491 - - - - - 0.778 0.713 - - twist family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-000210-6]
83. col6a2 ENSDARG00000061436 5063 1.486 - - - - - 0.716 0.770 - - collagen, type VI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-070501-7]
84. ctsz ENSDARG00000043081 1073 1.483 0.704 - - - - 0.779 - - - cathepsin Z [Source:ZFIN;Acc:ZDB-GENE-041010-139]
85. pls3 ENSDARG00000037655 5175 1.481 0.771 - - - - - 0.710 - - plastin 3 (T isoform) [Source:ZFIN;Acc:ZDB-GENE-040718-10]
86. ube2c ENSDARG00000101618, ENSDARG00000114670 5271 1.47 0.713 - - - - - 0.757 - - ubiquitin-conjugating enzyme E2C [Source:ZFIN;Acc:ZDB-GENE-051030-48]
87. tram1 ENSDARG00000019137, ENSDARG00000109629 8309 1.468 - - - 0.738 - - - - 0.730 translocation associated membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-021011-1]
88. HECTD4 ENSDARG00000101079 952 1.466 - - - - - 0.751 0.715 - - HECT domain E3 ubiquitin protein ligase 4 [Source:HGNC Symbol;Acc:HGNC:26611]
89. srpk1a ENSDARG00000073997, ENSDARG00000116973 2424 1.462 0.710 - - - - - - - 0.752 SRSF protein kinase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2399]
90. spata13 ENSDARG00000062837 5330 1.46 - - - - - 0.743 0.717 - - spermatogenesis associated 13 [Source:ZFIN;Acc:ZDB-GENE-091116-25]
91. tax1bp1b ENSDARG00000056856 4526 1.459 - - - - - - 0.757 - 0.702 Tax1 (human T-cell leukemia virus type I) binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2872]
92. gmppb ENSDARG00000017658 3484 1.459 0.733 - - - - - 0.726 - - GDP-mannose pyrophosphorylase B [Source:ZFIN;Acc:ZDB-GENE-040801-234]
93. elovl7b ENSDARG00000100185 2032 1.456 0.706 - - - - - 0.750 - - ELOVL fatty acid elongase 7b [Source:ZFIN;Acc:ZDB-GENE-030131-5485]
94. zgc:158309 zgc:158309 2696 1.455 0.704 - - - - - - - 0.751
95. C19H18orf21_1 C19H18orf21_1 1657 1.448 - - - 0.728 - - 0.720 - -
96. dkc1 ENSDARG00000016484 7088 1.435 - - - - 0.723 - 0.712 - - dyskeratosis congenita 1, dyskerin [Source:ZFIN;Acc:ZDB-GENE-031118-120]
97. si:ch211-87l2.1 si:ch211-87l2.1 2403 1.434 - - - - - - 0.730 - 0.704
98. arf1 ENSDARG00000009484 5034 1.427 0.703 - - - - - 0.724 - - ADP-ribosylation factor 1 [Source:ZFIN;Acc:ZDB-GENE-010724-5]
99. suclg2 ENSDARG00000044914 7950 1.424 - - - - - 0.709 0.715 - - succinate-CoA ligase, GDP-forming, beta subunit [Source:ZFIN;Acc:ZDB-GENE-030114-3]
100. sh3glb1 sh3glb1 1335 0.989 - 0.989 - - - - - - -

There are 1206 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA