Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for arf3a

Gene Name Gene ID Reads Annotation
arf3a ENSDARG00000070539 29 ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]










Genes with expression patterns similar to arf3a

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. arf3a ENSDARG00000070539 29 8 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ADP-ribosylation factor 3a [Source:ZFIN;Acc:ZDB-GENE-040801-176]
2. KCNAB2 KCNAB2 129 2.44 - - - - 0.886 0.732 0.822 - -
3. rgs9b ENSDARG00000045156, ENSDARG00000111650 77 1.993 - - - - - 0.993 1.000 - - regulator of G protein signaling 9b [Source:ZFIN;Acc:ZDB-GENE-040426-1708]
4. CLDN20 26 1.989 - - - - - 0.989 1.000 - - claudin 20, transcript variant X2
5. si:ch211-240g9.1 36 1.979 - - - - - 0.979 1.000 - - si:ch211-240g9.1
6. kif3cb ENSDARG00000079500 935 1.969 1.000 - - - - 0.969 - - - kinesin family member 3Cb [Source:ZFIN;Acc:ZDB-GENE-080709-4]
7. mcph1 ENSDARG00000058372 51 1.968 - - - - - 0.968 1.000 - - microcephalin 1 [Source:ZFIN;Acc:ZDB-GENE-060421-6122]
8. zdhhc12b ENSDARG00000052787 43 1.962 - - - - - 0.962 1.000 - - zinc finger, DHHC-type containing 12b [Source:ZFIN;Acc:ZDB-GENE-070705-356]
9. trhr2 ENSDARG00000093901, ENSDARG00000114177 67 1.932 - - - - - 0.932 1.000 - - thyrotropin releasing hormone receptor 2 [Source:ZFIN;Acc:ZDB-GENE-050419-193]
10. tceanc2 ENSDARG00000062919 32 1.905 0.905 - - - - - 1.000 - - transcription elongation factor A (SII) N-terminal and central domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070705-486]
11. nrn1la ENSDARG00000069368, ENSDARG00000112044, ENSDARG00000112869 16 1.905 0.905 - - - - - 1.000 - - neuritin 1-like a [Source:NCBI gene;Acc:100004307]
12. scpp5 ENSDARG00000078622 15 1.903 - - 0.907 - - 0.996 - - - secretory calcium-binding phosphoprotein 5 [Source:ZFIN;Acc:ZDB-GENE-090313-256]
13. CNTNAP1 ENSDARG00000074524 73 1.902 0.905 - - - - 0.997 - - - contactin associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-030916-2]
14. si:dkey-10f21.16 si:dkey-10f21.16 252 1.901 - - - - - 0.901 1.000 - -
15. KCNIP4 ENSDARG00000088100 86 1.89 0.905 - - - - 0.985 - - - potassium voltage-gated channel interacting protein 4 [Source:HGNC Symbol;Acc:HGNC:30083]
16. PLCXD1_3 PLCXD1_3 35 1.882 - - 0.907 - - 0.975 - - -
17. ZDHHC12 ZDHHC12 29 1.867 - - - 0.993 - - - 0.874 -
18. wars2 ENSDARG00000011801 134 1.867 - - - - - 0.950 - 0.917 - tryptophanyl tRNA synthetase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-050306-26]
19. KCNS1 KCNS1 24 1.866 - - 0.882 - - 0.984 - - -
20. nrsn1 ENSDARG00000111235 123 1.862 0.942 - - - - 0.920 - - - neurensin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7491]
21. slc4a11 ENSDARG00000075532, ENSDARG00000115789 20 1.86 - - 0.860 - - - 1.000 - - solute carrier family 4, sodium borate transporter, member 11 [Source:ZFIN;Acc:ZDB-GENE-090313-183]
22. CABZ01038313.1 CABZ01038313.1 79 1.857 - - - - - 0.929 - 0.928 -
23. eif3hb ENSDARG00000036116 203 1.841 0.912 - - - - 0.929 - - - eukaryotic translation initiation factor 3, subunit H, b [Source:ZFIN;Acc:ZDB-GENE-051030-42]
24. camkvl ENSDARG00000057000 40 1.823 - - - - - 0.945 0.878 - - CaM kinase-like vesicle-associated, like [Source:ZFIN;Acc:ZDB-GENE-090311-58]
25. zgc:158291 ENSDARG00000044375, ENSDARG00000111929 621 1.822 - - - - - 0.992 0.830 - - zgc:158291 [Source:ZFIN;Acc:ZDB-GENE-061215-70]
26. zgc:163061 ENSDARG00000075538, ENSDARG00000076766 54 1.817 - - - 0.817 - - 1.000 - - zgc:163061 [Source:ZFIN;Acc:ZDB-GENE-070410-132]
27. trim3a ENSDARG00000063711 44 1.816 0.939 - - 0.877 - - - - - tripartite motif containing 3a [Source:ZFIN;Acc:ZDB-GENE-080522-4]
28. gpr157 ENSDARG00000034975, ENSDARG00000115075 61 1.812 - - - - - 0.996 - 0.816 - G protein-coupled receptor 157 [Source:ZFIN;Acc:ZDB-GENE-050809-126]
29. mir124-3 26 1.807 - - - - 0.811 0.996 - - - microRNA 124-3
30. CT025910.1 CT025910.1 143 1.798 0.857 - - - - 0.941 - - -
31. VWA7 ENSDARG00000061462 816 1.788 - - - - - 0.941 0.847 - - von Willebrand factor A domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-060503-234]
32. tmem179b ENSDARG00000069495 17 1.785 - - - 0.785 - - 1.000 - - transmembrane protein 179B [Source:ZFIN;Acc:ZDB-GENE-091204-145]
33. scn1lab ENSDARG00000062744 155 1.772 0.929 - - - - 0.843 - - - sodium channel, voltage-gated, type I like, alpha b [Source:ZFIN;Acc:ZDB-GENE-060906-1]
34. GRIN2B GRIN2B 140 1.766 - - - - - 1.000 0.766 - -
35. DNER ENSDARG00000061031 123 1.758 0.905 - - - - - 0.853 - - delta/notch-like EGF repeat containing [Source:ZFIN;Acc:ZDB-GENE-130502-1]
36. sgms2 57 1.753 - - - - - 0.993 - 0.760 - sphingomyelin synthase 2, transcript variant X1
37. CR407547.1 ENSDARG00000117572 41 1.748 0.763 - - - - 0.985 - - -
38. CABZ01061146.1 CABZ01061146.1 28 1.744 - - - - - 0.865 - 0.879 -
39. PKN1 PKN1 42 1.739 - - - - - 0.986 - 0.753 -
40. si:dkey-22o22.2 ENSDARG00000102445 149 1.739 - - - - - 0.991 0.748 - - si:dkey-22o22.2 [Source:ZFIN;Acc:ZDB-GENE-100922-84]
41. si:dkey-163m14.10 si:dkey-163m14.10 33 1.733 0.745 - - - - 0.988 - - -
42. kcnj11l ENSDARG00000031438 369 1.712 0.748 - - - - 0.964 - - - potassium inwardly-rectifying channel, subfamily J, member 11, like [Source:ZFIN;Acc:ZDB-GENE-050222-2]
43. fam131ba ENSDARG00000070952 26 1.705 - - - 0.931 - - - 0.774 - family with sequence similarity 131, member Ba [Source:ZFIN;Acc:ZDB-GENE-060503-616]
44. nrn1b ENSDARG00000042656 44 1.705 - - - - - 0.987 0.718 - - neuritin 1b [Source:ZFIN;Acc:ZDB-GENE-041010-98]
45. si:ch211-198c19.2 si:ch211-198c19.2 165 1.697 - - - - - - 0.793 0.904 -
46. pkib ENSDARG00000053110 527 1.694 0.770 - - - - 0.924 - - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:ZFIN;Acc:ZDB-GENE-041014-312]
47. shox2 ENSDARG00000075713 104 1.689 - - - 0.863 - 0.826 - - - short stature homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1457]
48. ric8a ENSDARG00000007247 229 1.688 0.720 - - - - 0.968 - - - RIC8 guanine nucleotide exchange factor A [Source:ZFIN;Acc:ZDB-GENE-040927-18]
49. BX470131.1 BX470131.1 86 1.678 - - 0.757 - - 0.921 - - -
50. her3 ENSDARG00000076857 131 1.672 0.754 - - - - 0.918 - - - hairy-related 3 [Source:ZFIN;Acc:ZDB-GENE-980526-204]
51. f2rl2 ENSDARG00000090524 37 1.67 - - - - - 0.961 0.709 - - coagulation factor II (thrombin) receptor-like 2 [Source:ZFIN;Acc:ZDB-GENE-110127-4]
52. htr2cl1 ENSDARG00000018228, ENSDARG00000113913 131 1.67 - - - - - 0.950 - 0.720 - 5-hydroxytryptamine (serotonin) receptor 2C, G protein-coupled-like 1 [Source:ZFIN;Acc:ZDB-GENE-081104-48]
53. si:dkey-14d8.6 ENSDARG00000045835 72 1.663 0.839 - - - - - - 0.824 - si:dkey-14d8.6 [Source:ZFIN;Acc:ZDB-GENE-041210-124]
54. DTX4 ENSDARG00000076302 2642 1.653 0.776 - - - - 0.877 - - - deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
55. prph ENSDARG00000028306 242 1.645 0.918 - - - - 0.727 - - - peripherin [Source:ZFIN;Acc:ZDB-GENE-990415-207]
56. slc1a1 ENSDARG00000020212 104 1.644 - - - 0.775 - 0.869 - - - solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1 [Source:ZFIN;Acc:ZDB-GENE-040718-414]
57. SGIP1 SGIP1 236 1.643 0.716 - - - - 0.927 - - -
58. rad21b ENSDARG00000035655 87 1.643 0.732 - - - - 0.911 - - - RAD21 cohesin complex component b [Source:ZFIN;Acc:ZDB-GENE-060503-223]
59. ek1 ENSDARG00000020080 742 1.642 - - - 0.750 - 0.892 - - - eph-like kinase 1 [Source:ZFIN;Acc:ZDB-GENE-990415-58]
60. bsk146 ENSDARG00000099069 274 1.64 0.716 - - - - 0.924 - - - brain specific kinase 146 [Source:ZFIN;Acc:ZDB-GENE-060313-3]
61. CR847906.1 ENSDARG00000099493 88 1.634 - - - - - 0.856 - 0.778 - protein NLRC3-like [Source:NCBI gene;Acc:571651]
62. trim23 ENSDARG00000069420 103 1.631 - - - - - - 0.774 0.857 - tripartite motif containing 23 [Source:ZFIN;Acc:ZDB-GENE-060929-804]
63. efr3ba ENSDARG00000033516 19 1.623 0.905 - - - - - 0.718 - - EFR3 homolog Ba (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030616-64]
64. CDR2 CDR2 384 1.62 - - - - - 0.894 0.726 - -
65. RGS9BP ENSDARG00000086756 65 1.61 - - - - 0.755 0.855 - - - regulator of G protein signaling 9 binding protein [Source:HGNC Symbol;Acc:HGNC:30304]
66. trh ENSDARG00000006868 31 1.594 - - - 0.828 - - 0.766 - - thyrotropin-releasing hormone [Source:ZFIN;Acc:ZDB-GENE-020930-1]
67. fgd 377 1.589 - - - - - 0.749 0.840 - - faciogenital dysplasia
68. ccdc28b ENSDARG00000011222 528 1.584 0.858 - - - - 0.726 - - - coiled-coil domain containing 28B [Source:ZFIN;Acc:ZDB-GENE-060208-3]
69. C5H9orf172 C5H9orf172 65 1.581 - - - - - 0.809 0.772 - -
70. nme6 ENSDARG00000016138 207 1.58 - - - - - 0.814 0.766 - - NME/NM23 nucleoside diphosphate kinase 6 [Source:ZFIN;Acc:ZDB-GENE-000710-3]
71. stap2a ENSDARG00000092810 591 1.56 - - - - - 0.807 0.753 - - signal transducing adaptor family member 2a [Source:ZFIN;Acc:ZDB-GENE-030131-5383]
72. aldh2.2_1 ENSDARG00000028087 279 1.556 - - - - - 0.768 - 0.788 - aldehyde dehydrogenase 2 family member, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-030326-5]
73. fam43b ENSDARG00000070222 92 1.545 0.779 - - - - - 0.766 - - family with sequence similarity 43, member B [Source:ZFIN;Acc:ZDB-GENE-040912-11]
74. htr6 ENSDARG00000016095 9 1.533 - - - 0.793 0.740 - - - - 5-hydroxytryptamine (serotonin) receptor 6 [Source:ZFIN;Acc:ZDB-GENE-030131-7839]
75. slc17a6b ENSDARG00000041150 823 1.529 0.798 - - - - 0.731 - - - solute carrier family 17 (vesicular glutamate transporter), member 6b [Source:ZFIN;Acc:ZDB-GENE-030616-554]
76. MMP15 MMP15 88 1.523 - - - 0.727 - - - 0.796 -
77. RPH3A RPH3A 309 1.513 0.767 - - - - 0.746 - - -
78. si:dkey-79f11.1 si:dkey-79f11.1 91 1.512 0.711 - - - - 0.801 - - -
79. sh3bgrl2 ENSDARG00000036878 282 1.501 - - - - - 0.753 0.748 - - SH3 domain binding glutamate-rich protein like 2 [Source:ZFIN;Acc:ZDB-GENE-040704-38]
80. hmp19 2554 1.479 0.772 - - - - 0.707 - - - HMP19 protein
81. C18H15orf61 C18H15orf61 104 1.473 - - - - - - 0.708 0.765 -
82. gyg1b ENSDARG00000059391 389 1.463 - - - - - 0.715 - 0.748 - glycogenin 1b [Source:ZFIN;Acc:ZDB-GENE-040625-30]
83. FAM150A 14 1 - - - - - - 1.000 - - family with sequence similarity 150 member A, transcript variant X2
84. insl3 ENSDARG00000035862 1 1 - - - - - - 1.000 - - insulin-like 3 (Leydig cell) [Source:ZFIN;Acc:ZDB-GENE-050310-5]
85. ENSDARG00000086640 ENSDARG00000086640 3 1 - - - - - - 1.000 - -
86. EXD1 ENSDARG00000098669 27 1 - - - - - - 1.000 - - exonuclease 3'-5' domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060825-267]
87. ccbl2 4 1 - - - - - - 1.000 - - cysteine conjugate-beta lyase 2, transcript variant X4
88. baiap2l2 baiap2l2 30 1 - - - - - - 1.000 - -
89. si:dkey-27c15.3 ENSDARG00000056847 37 1 - - - - - - 1.000 - - si:dkey-27c15.3 [Source:ZFIN;Acc:ZDB-GENE-060503-728]
90. CR318653.1 ENSDARG00000104557 29 1 - - - - - - 1.000 - -
91. CR382327.1 ENSDARG00000088739 56 1 - - - - - - 1.000 - -
92. KIF21B ENSDARG00000009733 53 1 - - - - - - 1.000 - - kinesin family member 21B [Source:ZFIN;Acc:ZDB-GENE-130530-537]
93. numbl ENSDARG00000101949, ENSDARG00000112946 87 1 - - - - - - 1.000 - - numb homolog (Drosophila)-like [Source:ZFIN;Acc:ZDB-GENE-051113-340]
94. st8sia3 ENSDARG00000045301 3 1 - - - - - - 1.000 - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 [Source:ZFIN;Acc:ZDB-GENE-060228-4]
95. cd74b ENSDARG00000036628 8 1 - - - - - - 1.000 - - CD74 molecule, major histocompatibility complex, class II invariant chain b [Source:ZFIN;Acc:ZDB-GENE-990910-10]
96. si:dkey-162b3.5 si:dkey-162b3.5 24 1 - - - - - - 1.000 - -
97. CR854829.1 ENSDARG00000101518 17 1 - - - - - - 1.000 - -
98. URB1 ENSDARG00000060308 78 1 - - - - - - 1.000 - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-5181]
99. CR339051.1 CR339051.1 9 1 - - - - - - 1.000 - -
100. EGR4_1 EGR4_1 14 1 - - - - - - 1.000 - -

There are 1903 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA