Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for arcn1b

Gene Name Gene ID Reads Annotation
arcn1b ENSDARG00000031214 4529 archain 1b [Source:ZFIN;Acc:ZDB-GENE-040121-7]










Genes with expression patterns similar to arcn1b

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. arcn1b ENSDARG00000031214 4529 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 archain 1b [Source:ZFIN;Acc:ZDB-GENE-040121-7]
2. SH3D21 ENSDARG00000099448 1726 3.225 0.793 0.963 - - - 0.739 0.730 - - SH3 domain containing 21 [Source:ZFIN;Acc:ZDB-GENE-051120-57]
3. stag2b ENSDARG00000053668, ENSDARG00000109728 7193 2.601 - - 0.947 - 0.930 - 0.724 - - stromal antigen 2b [Source:ZFIN;Acc:ZDB-GENE-030131-2785]
4. rnf128a ENSDARG00000016867 3146 2.601 - 0.956 - - - 0.832 0.813 - - ring finger protein 128a [Source:ZFIN;Acc:ZDB-GENE-030131-1044]
5. pdlim1 ENSDARG00000019845 5765 2.467 0.723 - - - 0.973 - 0.771 - - PDZ and LIM domain 1 (elfin) [Source:ZFIN;Acc:ZDB-GENE-030131-5227]
6. vimp 4034 2.441 - 0.972 - - - 0.760 0.709 - - VCP-interacting membrane selenoprotein
7. gart ENSDARG00000101089 6062 2.44 0.726 0.779 - - 0.935 - - - - phosphoribosylglycinamide formyltransferase [Source:ZFIN;Acc:ZDB-GENE-000616-14]
8. spcs1 ENSDARG00000059298 5327 2.419 - - - - 0.979 0.704 0.736 - - signal peptidase complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-050809-130]
9. rer1 ENSDARG00000012747 6939 2.418 0.734 - - - 0.972 0.712 - - - retention in endoplasmic reticulum sorting receptor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1494]
10. rab5c ENSDARG00000026712 4733 2.401 - 0.825 - - - 0.807 0.769 - - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
11. mgst1 mgst1 2820 2.37 0.761 - - - - 0.829 0.780 - -
12. nedd8 ENSDARG00000007989 3896 2.335 - - 0.889 - - 0.704 0.742 - - neural precursor cell expressed, developmentally down-regulated 8 [Source:ZFIN;Acc:ZDB-GENE-030616-588]
13. pef1 ENSDARG00000023989 3013 2.246 - - - 0.718 - 0.782 0.746 - - penta-EF-hand domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040801-259]
14. RBM6 ENSDARG00000077060 3521 2.149 0.704 - - - - - 0.738 - 0.707 RNA binding motif protein 6 [Source:ZFIN;Acc:ZDB-GENE-050309-79]
15. elf2b ENSDARG00000079626, ENSDARG00000117064 3057 1.965 - - 0.985 - 0.980 - - - - E74-like factor 2b (ets domain transcription factor) [Source:ZFIN;Acc:ZDB-GENE-031215-1]
16. NDUFB2 ENSDARG00000045490 9141 1.938 - - 0.986 - 0.952 - - - - NADH:ubiquinone oxidoreductase subunit B2 [Source:ZFIN;Acc:ZDB-GENE-040426-1762]
17. ap3d1 ENSDARG00000071424, ENSDARG00000114974 5373 1.928 - 0.973 0.955 - - - - - - adaptor related protein complex 3 subunit delta 1 [Source:ZFIN;Acc:ZDB-GENE-050208-437]
18. sdhb ENSDARG00000075768 5493 1.912 - 0.930 0.982 - - - - - - succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Source:ZFIN;Acc:ZDB-GENE-030131-8005]
19. gmppb ENSDARG00000017658 3484 1.912 - 0.944 0.968 - - - - - - GDP-mannose pyrophosphorylase B [Source:ZFIN;Acc:ZDB-GENE-040801-234]
20. tp53 ENSDARG00000035559, ENSDARG00000115148 4362 1.887 - 0.964 0.923 - - - - - - tumor protein p53 [Source:ZFIN;Acc:ZDB-GENE-990415-270]
21. si:dkey-193b15.6 si:dkey-193b15.6 1340 1.86 - 0.975 - - - 0.885 - - -
22. fryl ENSDARG00000040001 3256 1.859 - - 0.988 - - 0.871 - - - furry homolog, like [Source:ZFIN;Acc:ZDB-GENE-040914-58]
23. vps29 ENSDARG00000069521 5599 1.844 - - 0.872 - 0.972 - - - - vacuolar protein sorting 29 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8764]
24. C6H2orf40 C6H2orf40 4224 1.844 - - - - 0.980 0.864 - - -
25. hnrnpk ENSDARG00000018914 8841 1.835 - 0.925 - - 0.910 - - - - heterogeneous nuclear ribonucleoprotein K [Source:ZFIN;Acc:ZDB-GENE-040426-1926]
26. lamtor5 ENSDARG00000090194, ENSDARG00000115255 2539 1.826 - - - - 0.983 0.843 - - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 [Source:ZFIN;Acc:ZDB-GENE-110411-193]
27. mthfd1l ENSDARG00000042221, ENSDARG00000110473 19571 1.826 - 0.911 - - 0.915 - - - - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like [Source:ZFIN;Acc:ZDB-GENE-041001-133]
28. ube2e2 ENSDARG00000034670 5918 1.825 - 0.949 0.876 - - - - - - ubiquitin-conjugating enzyme E2E 2 [Source:ZFIN;Acc:ZDB-GENE-040801-237]
29. eppk1 ENSDARG00000096359 4315 1.804 - - 0.980 - - 0.824 - - - epiplakin 1 [Source:ZFIN;Acc:ZDB-GENE-030416-1]
30. rp9 ENSDARG00000098942 3172 1.797 - 0.959 - - 0.838 - - - - RP9, pre-mRNA splicing factor [Source:ZFIN;Acc:ZDB-GENE-041114-42]
31. cldn7b ENSDARG00000014047, ENSDARG00000114912 2960 1.781 - 0.943 - - - 0.838 - - - claudin 7b [Source:ZFIN;Acc:ZDB-GENE-001103-5]
32. ovol1 1037 1.78 - 0.955 - - - 0.825 - - - ovo-like zinc finger 1, transcript variant X1
33. CABZ01055343.2 CABZ01055343.2 10312 1.774 - - - - 0.979 - 0.795 - -
34. sult1st4 ENSDARG00000003181 540 1.773 - 0.932 - - - 0.841 - - - sulfotransferase family 1, cytosolic sulfotransferase 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2054]
35. sdf4 ENSDARG00000070682, ENSDARG00000109313 1623 1.767 - 0.958 - - - - 0.809 - - stromal cell derived factor 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2061]
36. gabarapl2 ENSDARG00000027200 5120 1.756 - - 0.974 - - 0.782 - - - GABA(A) receptor-associated protein like 2 [Source:ZFIN;Acc:ZDB-GENE-040718-336]
37. CABZ01027552.1 CABZ01027552.1 760 1.755 - - - - 0.989 0.766 - - -
38. rbl1 ENSDARG00000008141 1217 1.753 - - 0.984 0.769 - - - - - retinoblastoma-like 1 (p107) [Source:ZFIN;Acc:ZDB-GENE-030131-8179]
39. gstt1b ENSDARG00000017388, ENSDARG00000112401 2107 1.752 - - 0.988 - - - 0.764 - - glutathione S-transferase theta 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1491]
40. rab11ba ENSDARG00000041878 4651 1.75 - 0.961 - - - - - - 0.789 RAB11B, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-040426-2860]
41. pdap1a ENSDARG00000092546, ENSDARG00000116115 7617 1.746 - - - - 0.955 0.791 - - - pdgfa associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-1693]
42. CABZ01013938.1 CABZ01013938.1 4497 1.744 - - - - 0.945 - 0.799 - -
43. aqp3a ENSDARG00000003808 9044 1.743 - 0.968 - - - - 0.775 - - aquaporin 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2826]
44. si:dkey-240e12.6 ENSDARG00000110137 674 1.731 - - 0.987 - - 0.744 - - - si:dkey-240e12.6 [Source:ZFIN;Acc:ZDB-GENE-050208-367]
45. lsm14aa ENSDARG00000006600 2298 1.731 - - 0.987 - - 0.744 - - - LSM14A mRNA processing body assembly factor a [Source:ZFIN;Acc:ZDB-GENE-040426-1567]
46. f11r f11r 16668 1.725 - - 0.968 - - - - 0.757 -
47. esrp1 ENSDARG00000011245 2097 1.722 - 0.959 - - - - 0.763 - - epithelial splicing regulatory protein 1 [Source:ZFIN;Acc:ZDB-GENE-070112-1732]
48. nfkbiaa ENSDARG00000005481 948 1.721 - - - - - 0.856 0.865 - - nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a [Source:ZFIN;Acc:ZDB-GENE-040426-2227]
49. pitx2 ENSDARG00000036194 2279 1.72 - - - - 0.978 - 0.742 - - paired-like homeodomain 2 [Source:ZFIN;Acc:ZDB-GENE-990714-27]
50. SIK1 ENSDARG00000058606 1982 1.719 - - 0.985 0.734 - - - - - salt-inducible kinase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9446]
51. brip1 ENSDARG00000074410, ENSDARG00000113993 501 1.715 - - 0.987 - - - 0.728 - - BRCA1 interacting protein C-terminal helicase 1 [Source:ZFIN;Acc:ZDB-GENE-081107-11]
52. gm2a ENSDARG00000088439 5387 1.715 0.742 - 0.973 - - - - - - GM2 ganglioside activator [Source:ZFIN;Acc:ZDB-GENE-050417-373]
53. copg2 ENSDARG00000034823 4162 1.715 - 0.960 - - - - 0.755 - - coatomer protein complex, subunit gamma 2 [Source:ZFIN;Acc:ZDB-GENE-000208-8]
54. armc9 ENSDARG00000087299 459 1.711 - - - 0.722 0.989 - - - - armadillo repeat containing 9 [Source:ZFIN;Acc:ZDB-GENE-100922-67]
55. MYO1D ENSDARG00000036863 768 1.71 - - 0.988 - - - 0.722 - - myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
56. gtf2e2 ENSDARG00000012672, ENSDARG00000109689, ENSDARG00000115211 1677 1.703 - - 0.991 - - 0.712 - - - general transcription factor IIE, polypeptide 2, beta [Source:ZFIN;Acc:ZDB-GENE-030131-6794]
57. tmed1a ENSDARG00000031325 1936 1.701 - 0.955 - - - - 0.746 - - transmembrane p24 trafficking protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-229]
58. laptm4a ENSDARG00000006397 1698 1.7 - - 0.988 - - 0.712 - - - lysosomal protein transmembrane 4 alpha [Source:ZFIN;Acc:ZDB-GENE-030131-1024]
59. exosc3 ENSDARG00000098334, ENSDARG00000104246 1287 1.699 - - - 0.741 0.958 - - - - exosome component 3 [Source:ZFIN;Acc:ZDB-GENE-050706-140]
60. vps4b ENSDARG00000069175 1922 1.699 - 0.964 - - - - 0.735 - - vacuolar protein sorting 4b homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-040426-1235]
61. erlin1 ENSDARG00000021991 5664 1.698 - 0.970 - - - - 0.728 - - ER lipid raft associated 1 [Source:ZFIN;Acc:ZDB-GENE-050327-13]
62. zgc:92066 ENSDARG00000031776, ENSDARG00000116586 12826 1.694 - - 0.878 - 0.816 - - - - zgc:92066 [Source:ZFIN;Acc:ZDB-GENE-040718-72]
63. im:7136729 im:7136729 1625 1.693 - 0.952 - - - - 0.741 - -
64. mtmr3 ENSDARG00000093364, ENSDARG00000098201 1541 1.687 - 0.938 - - - 0.749 - - - myotubularin related protein 3 [Source:ZFIN;Acc:ZDB-GENE-091204-465]
65. rps6ka3a ENSDARG00000035556, ENSDARG00000116641 3608 1.686 - - 0.981 - - - 0.705 - - ribosomal protein S6 kinase a, polypeptide 3a [Source:ZFIN;Acc:ZDB-GENE-030219-119]
66. hectd1 ENSDARG00000054213 3501 1.684 - - 0.978 - - 0.706 - - - HECT domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030616-153]
67. chmp5b ENSDARG00000103718 1608 1.684 - - - - - 0.852 0.832 - - charged multivesicular body protein 5b [Source:ZFIN;Acc:ZDB-GENE-040426-1374]
68. itgb4 ENSDARG00000028507 2568 1.678 - - - 0.776 - 0.902 - - - integrin, beta 4 [Source:ZFIN;Acc:ZDB-GENE-030131-7209]
69. sec31a ENSDARG00000021082, ENSDARG00000111434, ENSDARG00000114514 6991 1.676 - - - - 0.948 0.728 - - - SEC31 homolog A, COPII coat complex component [Source:ZFIN;Acc:ZDB-GENE-020919-2]
70. si:dkey-9i23.11 si:dkey-9i23.11 3818 1.668 - 0.949 - - - - 0.719 - -
71. ptpn4b ENSDARG00000000183 425 1.659 - 0.943 - 0.716 - - - - - protein tyrosine phosphatase, non-receptor type 4b [Source:ZFIN;Acc:ZDB-GENE-030131-6259]
72. notch2 ENSDARG00000043130 4430 1.656 - - - - - 0.876 0.780 - - notch 2 [Source:ZFIN;Acc:ZDB-GENE-000329-4]
73. timp2a ENSDARG00000061226, ENSDARG00000114336 1756 1.652 - - 0.883 - - - 0.769 - - TIMP metallopeptidase inhibitor 2a [Source:ZFIN;Acc:ZDB-GENE-030612-1]
74. atrx ENSDARG00000042236, ENSDARG00000112921, ENSDARG00000116878 7922 1.651 - - - - 0.949 0.702 - - - alpha thalassemia/mental retardation syndrome X-linked homolog (human) [Source:ZFIN;Acc:ZDB-GENE-030912-11]
75. FP102272.1 FP102272.1 9473 1.646 - 0.945 - - - 0.701 - - -
76. rpe ENSDARG00000005251, ENSDARG00000117024 3865 1.638 - 0.907 - - - - 0.731 - - ribulose-5-phosphate-3-epimerase [Source:ZFIN;Acc:ZDB-GENE-030131-6837]
77. tjp3 ENSDARG00000002909 1978 1.636 0.756 - 0.880 - - - - - - tight junction protein 3 [Source:ZFIN;Acc:ZDB-GENE-030828-10]
78. nr2f5 ENSDARG00000033172 11808 1.632 - 0.833 - - 0.799 - - - - nuclear receptor subfamily 2, group F, member 5 [Source:ZFIN;Acc:ZDB-GENE-990415-253]
79. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 30071 1.632 - 0.746 - - 0.886 - - - - aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
80. atp6v1ba ENSDARG00000013443, ENSDARG00000111525 6645 1.625 0.719 0.906 - - - - - - - ATPase, H+ transporting, lysosomal, V1 subunit B, member a [Source:ZFIN;Acc:ZDB-GENE-030711-3]
81. pafah1b3 ENSDARG00000058047, ENSDARG00000105336, ENSDARG00000116495 8019 1.615 - - 0.893 - - - 0.722 - - platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit [Source:ZFIN;Acc:ZDB-GENE-040426-1026]
82. efhd2 ENSDARG00000055759 7777 1.615 0.732 - - - - 0.883 - - - EF-hand domain family, member D2 [Source:ZFIN;Acc:ZDB-GENE-060531-152]
83. atp6v1c1b ENSDARG00000035880, ENSDARG00000112507 1869 1.61 0.778 - - - - 0.832 - - - ATPase H+ transporting V1 subunit C1b [Source:ZFIN;Acc:ZDB-GENE-041010-104]
84. copz2 ENSDARG00000006786, ENSDARG00000112084 4375 1.607 0.821 - - - - - 0.786 - - coatomer protein complex, subunit zeta 2 [Source:ZFIN;Acc:ZDB-GENE-000406-5]
85. cldnb ENSDARG00000009544 6036 1.606 0.757 - - - - 0.849 - - - claudin b [Source:ZFIN;Acc:ZDB-GENE-010328-2]
86. tmem18 ENSDARG00000036704 1784 1.605 - - - - - 0.818 0.787 - - transmembrane protein 18 [Source:ZFIN;Acc:ZDB-GENE-040927-26]
87. sepw1 17630 1.605 - - 0.861 - - - 0.744 - - selenoprotein W, 1
88. cbx5 ENSDARG00000061187 24026 1.604 - - - - 0.830 - 0.774 - - chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
89. actr2a ENSDARG00000052438 5838 1.601 - - - - - 0.842 0.759 - - ARP2 actin related protein 2a homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2894]
90. psmb6 ENSDARG00000002240 8015 1.587 - - 0.833 - - 0.754 - - - proteasome subunit beta 6 [Source:ZFIN;Acc:ZDB-GENE-990415-216]
91. stk40 ENSDARG00000098135 2683 1.585 - - - 0.739 - - 0.846 - - serine/threonine kinase 40 [Source:ZFIN;Acc:ZDB-GENE-030131-4831]
92. xbp1 ENSDARG00000035622 18416 1.584 - 0.730 - - - - 0.854 - - X-box binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-011210-2]
93. slc25a1b ENSDARG00000076381 6213 1.575 - 0.791 - - - - 0.784 - - slc25a1 solute carrier family 25 (mitochondrial carrier; citrate transporter), member 1b [Source:ZFIN;Acc:ZDB-GENE-130114-1]
94. vta1 ENSDARG00000013732 6072 1.575 - - - - - 0.828 0.747 - - vesicle (multivesicular body) trafficking 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2154]
95. tom1 ENSDARG00000104581 1457 1.564 - - - 0.750 - 0.814 - - - target of myb1 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-060721-1]
96. si:ch211-210c8.6 ENSDARG00000017811 908 1.548 0.730 - - - - 0.818 - - - si:ch211-210c8.6 [Source:ZFIN;Acc:ZDB-GENE-030131-3630]
97. bcar1 ENSDARG00000056525 6563 1.543 - - - - - 0.841 0.702 - - BCAR1, Cas family scaffold protein [Source:ZFIN;Acc:ZDB-GENE-030131-2774]
98. afap1 ENSDARG00000055284 730 1.541 - - - - - 0.817 0.724 - - actin filament associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-100316-6]
99. trpc4apa ENSDARG00000018840 2543 1.537 - - - 0.711 - 0.826 - - - transient receptor potential cation channel, subfamily C, member 4 associated protein a [Source:ZFIN;Acc:ZDB-GENE-000330-3]
100. C17H15orf57 C17H15orf57 1366 1.525 - - - - - 0.819 0.706 - -

There are 1611 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA