Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for alyref

Gene Name Gene ID Reads Annotation
alyref ENSDARG00000077732 25934 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]










Genes with expression patterns similar to alyref

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. alyref ENSDARG00000077732 25934 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
2. G3BP2 ENSDARG00000014790 9380 2.517 - - - - - 0.730 0.990 - 0.797 GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
3. bzw1a ENSDARG00000010481 28451 2.48 0.746 0.744 - - - - 0.990 - - basic leucine zipper and W2 domains 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3951]
4. si:ch211-51e12.7 ENSDARG00000045914 9598 2.458 0.773 0.984 - - - 0.701 - - - si:ch211-51e12.7 [Source:ZFIN;Acc:ZDB-GENE-030131-8279]
5. ube2v2 ENSDARG00000028198 23341 2.456 - - 0.835 - - 0.716 - - 0.905 ubiquitin-conjugating enzyme E2 variant 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2919]
6. sltm ENSDARG00000052728 6234 2.382 - 0.723 - - - 0.757 - - 0.902 SAFB-like, transcription modulator [Source:ZFIN;Acc:ZDB-GENE-040426-2647]
7. bag6 ENSDARG00000075892 3782 2.136 - 0.722 0.712 - - 0.702 - - - BCL2 associated athanogene 6 [Source:ZFIN;Acc:ZDB-GENE-010501-5]
8. eif4g2b ENSDARG00000057167 22982 1.959 - - - 0.981 - - 0.978 - - eukaryotic translation initiation factor 4, gamma 2b [Source:ZFIN;Acc:ZDB-GENE-030131-6550]
9. CABZ01034848.1 CABZ01034848.1 9936 1.926 - - - 0.944 - - 0.982 - -
10. rbmx2 ENSDARG00000044380, ENSDARG00000115698 2528 1.874 - - - - - - 0.985 - 0.889 RNA binding motif protein X-linked 2 [Source:ZFIN;Acc:ZDB-GENE-050626-88]
11. dlb ENSDARG00000004232 5120 1.801 - - 0.812 - - - 0.989 - - deltaB [Source:ZFIN;Acc:ZDB-GENE-980526-114]
12. nr2f5 ENSDARG00000033172 11808 1.784 - - - - - 0.802 0.982 - - nuclear receptor subfamily 2, group F, member 5 [Source:ZFIN;Acc:ZDB-GENE-990415-253]
13. rnps1 ENSDARG00000116743 9994 1.752 - 0.944 - - - 0.808 - - - RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
14. atp1a3a ENSDARG00000018259 5393 1.743 - - 0.756 - - - 0.987 - - ATPase Na+/K+ transporting subunit alpha 3a [Source:ZFIN;Acc:ZDB-GENE-001212-7]
15. hif1ab ENSDARG00000034293 10284 1.739 - - - - - 0.760 0.979 - - hypoxia inducible factor 1 subunit alpha b [Source:ZFIN;Acc:ZDB-GENE-040426-706]
16. caprin1a ENSDARG00000009346, ENSDARG00000112212 9675 1.732 0.742 - - - - - 0.990 - - cell cycle associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-226]
17. ssbp3b ENSDARG00000030155 7163 1.731 - - 0.773 0.958 - - - - - single stranded DNA binding protein 3b [Source:ZFIN;Acc:ZDB-GENE-040426-2801]
18. eif3i ENSDARG00000017445 21149 1.727 0.788 - - 0.939 - - - - - eukaryotic translation initiation factor 3, subunit I [Source:ZFIN;Acc:ZDB-GENE-040426-1922]
19. psma5 ENSDARG00000003526, ENSDARG00000116794 5106 1.727 0.753 - - - - - 0.974 - - proteasome subunit alpha 5 [Source:ZFIN;Acc:ZDB-GENE-040625-96]
20. MAF1 ENSDARG00000013122 6899 1.72 - - 0.729 - - - 0.991 - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
21. kpna2 ENSDARG00000038066 7954 1.701 - 0.711 - - - - 0.990 - - karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:ZFIN;Acc:ZDB-GENE-040718-22]
22. pcna ENSDARG00000054155 89521 1.698 - - - - - 0.706 0.992 - - proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
23. ACVR2B 6615 1.697 0.709 - - - - - 0.988 - - activin A receptor, type IIB
24. khdrbs1b ENSDARG00000070475 18157 1.696 0.745 - - - - - - - 0.951 KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
25. znf827 ENSDARG00000076171 6304 1.695 - - - - - 0.782 0.913 - - zinc finger protein 827 [Source:ZFIN;Acc:ZDB-GENE-080728-3]
26. eif3c ENSDARG00000016443 18003 1.673 0.742 - - - - - - - 0.931 eukaryotic translation initiation factor 3, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-6166]
27. ywhabl ENSDARG00000040287 39045 1.668 - 0.747 - 0.921 - - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide like [Source:ZFIN;Acc:ZDB-GENE-030131-448]
28. eif3s6ip ENSDARG00000101082 18515 1.658 0.741 0.917 - - - - - - - eukaryotic translation initiation factor 3, subunit 6 interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-2138]
29. kifc1 ENSDARG00000001558 6658 1.653 - 0.946 - - - 0.707 - - - kinesin family member C1 [Source:ZFIN;Acc:ZDB-GENE-000208-21]
30. tubb4b ENSDARG00000002344 30333 1.649 - 0.719 - - - - - - 0.930 tubulin, beta 4B class IVb [Source:ZFIN;Acc:ZDB-GENE-030131-8625]
31. setb ENSDARG00000003920 21788 1.631 0.706 - - - - - - - 0.925 SET nuclear proto-oncogene b [Source:ZFIN;Acc:ZDB-GENE-030131-433]
32. pmp22b ENSDARG00000060457 20406 1.628 - - - 0.837 - - - - 0.791 peripheral myelin protein 22b [Source:ZFIN;Acc:ZDB-GENE-060421-4337]
33. atf4b1 atf4b1 17316 1.624 - - - 0.923 - 0.701 - - -
34. psme4b ENSDARG00000018742, ENSDARG00000112854, ENSDARG00000114902 2916 1.617 - 0.730 - - - - - - 0.887 proteasome activator subunit 4b [Source:ZFIN;Acc:ZDB-GENE-100316-4]
35. cdkn1c cdkn1c 17427 1.609 - 0.707 - - - - - 0.902 -
36. rbx1 ENSDARG00000038030 14611 1.602 - - - - - 0.734 - - 0.868 ring-box 1, E3 ubiquitin protein ligase [Source:ZFIN;Acc:ZDB-GENE-041008-106]
37. zc3h15 ENSDARG00000015889 3861 1.601 - 0.708 - - - - - - 0.893 zinc finger CCCH-type containing 15 [Source:ZFIN;Acc:ZDB-GENE-030131-6239]
38. cirbp cirbp 88363 1.599 - - 0.725 0.874 - - - - -
39. khsrp ENSDARG00000026489 15738 1.594 0.743 - 0.851 - - - - - - KH-type splicing regulatory protein [Source:ZFIN;Acc:ZDB-GENE-030131-4357]
40. wu:fk48d07 wu:fk48d07 13245 1.588 0.752 - 0.836 - - - - - -
41. rsl24d1 ENSDARG00000040439 13537 1.574 0.735 - - - - 0.839 - - - ribosomal L24 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1925]
42. rrm2_1 ENSDARG00000020711, ENSDARG00000078069 11634 1.568 - 0.720 - - - - - 0.848 - ribonucleotide reductase M2 polypeptide [Source:ZFIN;Acc:ZDB-GENE-990415-25]
43. h2afvb ENSDARG00000116491 35692 1.556 0.796 - - - - 0.760 - - - H2A histone family, member Vb [Source:ZFIN;Acc:ZDB-GENE-050506-24]
44. smarca4 smarca4 9726 1.541 0.776 - - - - 0.765 - - -
45. uba1 ENSDARG00000037559 11579 1.532 0.773 - - - - - - 0.759 - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
46. xpo1a ENSDARG00000078041 3544 1.519 - - 0.759 - - 0.760 - - - exportin 1 (CRM1 homolog, yeast) a [Source:ZFIN;Acc:ZDB-GENE-050309-201]
47. srsf5a ENSDARG00000029818 15600 1.515 0.773 - - - - 0.742 - - - serine/arginine-rich splicing factor 5a [Source:ZFIN;Acc:ZDB-GENE-030131-7336]
48. parp1 ENSDARG00000019529 6787 1.51 0.769 - - 0.741 - - - - - poly (ADP-ribose) polymerase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3955]
49. marcksl1b ENSDARG00000035715 37390 1.507 0.803 - - - 0.704 - - - - MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
50. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.507 - 0.706 - - - 0.801 - - - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
51. sptbn2 ENSDARG00000053956 8452 1.504 - - 0.776 - - 0.728 - - - spectrin, beta, non-erythrocytic 2 [Source:ZFIN;Acc:ZDB-GENE-030131-787]
52. GATAD2B ENSDARG00000005834 3855 1.499 - 0.725 0.774 - - - - - - GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
53. gtf2f1 ENSDARG00000032129 3041 1.498 - 0.719 0.779 - - - - - - general transcription factor IIF, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4557]
54. PELP1 ENSDARG00000079313 5771 1.486 - 0.722 - - - 0.764 - - - proline, glutamate and leucine rich protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-164]
55. nop16 ENSDARG00000044402 3645 1.484 0.760 0.724 - - - - - - - NOP16 nucleolar protein homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040718-267]
56. khdrbs1a ENSDARG00000052856 53666 1.476 0.760 - 0.716 - - - - - - KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
57. TAF15 ENSDARG00000070019 5102 1.476 0.765 - - - - 0.711 - - - TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-061215-102]
58. hnrnpul1 ENSDARG00000040564 6550 1.475 0.728 - 0.747 - - - - - - heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
59. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 1.474 0.772 - 0.702 - - - - - - adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
60. cx43.4 ENSDARG00000007099 16369 1.47 0.742 - - - - 0.728 - - - connexin 43.4 [Source:ZFIN;Acc:ZDB-GENE-990415-38]
61. hnrnpr ENSDARG00000014569 3423 1.467 0.721 - - - - 0.746 - - - heterogeneous nuclear ribonucleoprotein R [Source:ZFIN;Acc:ZDB-GENE-040426-2766]
62. LIG1 ENSDARG00000060041, ENSDARG00000110159, ENSDARG00000113788 8110 1.449 0.721 - - - - 0.728 - - - ligase I, DNA, ATP-dependent [Source:ZFIN;Acc:ZDB-GENE-110404-2]
63. h1fx ENSDARG00000054058 4075 1.445 0.729 - - - - - - 0.716 - H1 histone family, member X [Source:ZFIN;Acc:ZDB-GENE-030131-1228]
64. rbm4.3 ENSDARG00000022129 28571 1.435 - - 0.724 - - 0.711 - - - RNA binding motif protein 4.3 [Source:ZFIN;Acc:ZDB-GENE-040426-1938]
65. MAP4K4 ENSDARG00000098670 4665 1.433 0.705 0.728 - - - - - - - mitogen-activated protein kinase kinase kinase kinase 4 [Source:ZFIN;Acc:ZDB-GENE-030131-6722]
66. chd7 ENSDARG00000075211 12085 1.43 0.700 - 0.730 - - - - - - chromodomain helicase DNA binding protein 7 [Source:ZFIN;Acc:ZDB-GENE-070912-179]
67. ier5l ENSDARG00000054906, ENSDARG00000110793, ENSDARG00000114072 4216 1.43 - - 0.707 - - 0.723 - - - immediate early response 5-like [Source:ZFIN;Acc:ZDB-GENE-030131-5134]
68. arih1 ENSDARG00000003616, ENSDARG00000109413 1739 1.428 - 0.720 0.708 - - - - - - ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5213]
69. arl6ip1 ENSDARG00000054578, ENSDARG00000112340 11714 1.428 - 0.720 - - - - - 0.708 - ADP-ribosylation factor-like 6 interacting protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1087]
70. znf703 ENSDARG00000035563, ENSDARG00000112912 2226 1.428 - - 0.716 - - 0.712 - - - zinc finger protein 703 [Source:ZFIN;Acc:ZDB-GENE-010717-1]
71. top1l ENSDARG00000070545 40529 1.423 - - 0.711 - 0.712 - - - - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
72. zgc:158387 zgc:158387 9147 0.989 - - - - - - 0.989 - -
73. tmed2 ENSDARG00000026908 9070 0.989 - - - - - - 0.989 - - transmembrane p24 trafficking protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-269]
74. ptprsa ENSDARG00000059738, ENSDARG00000110940 7232 0.989 - - - - - - 0.989 - - protein tyrosine phosphatase, receptor type, s, a [Source:ZFIN;Acc:ZDB-GENE-020107-3]
75. her6 ENSDARG00000006514, ENSDARG00000111099 7477 0.989 - - - - - - 0.989 - - hairy-related 6 [Source:ZFIN;Acc:ZDB-GENE-980526-144]
76. pou3f1 ENSDARG00000009823, ENSDARG00000112302 7037 0.988 - - - - - - 0.988 - - POU class 3 homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-980526-372]
77. tomm70a ENSDARG00000029639, ENSDARG00000112054 7715 0.988 - - - - - - 0.988 - - translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-8173]
78. ndufs3 ENSDARG00000015385 7790 0.988 - - - - - - 0.988 - - NADH:ubiquinone oxidoreductase core subunit S3 [Source:ZFIN;Acc:ZDB-GENE-050417-274]
79. pdha1a ENSDARG00000012387, ENSDARG00000116841 8358 0.988 - - - - - - 0.988 - - pyruvate dehydrogenase E1 alpha 1 subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-2719]
80. nkd1 ENSDARG00000020053 4450 0.988 - - - - - - 0.988 - - naked cuticle homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-061108-3]
81. BOLA2B BOLA2B 2957 0.987 - - - - - - 0.987 - -
82. anxa11a ENSDARG00000077383 4076 0.987 - - - - - - 0.987 - - annexin A11a [Source:ZFIN;Acc:ZDB-GENE-030707-4]
83. eif4a1b ENSDARG00000003032, ENSDARG00000116907 14301 0.987 - - - - - - 0.987 - - eukaryotic translation initiation factor 4A1B [Source:ZFIN;Acc:ZDB-GENE-040120-6]
84. map2k4b ENSDARG00000077177 1869 0.986 - - - - - - 0.986 - - mitogen-activated protein kinase kinase 4b [Source:ZFIN;Acc:ZDB-GENE-080721-13]
85. C18H12orf23 C18H12orf23 5362 0.986 - - - - - - 0.986 - -
86. prtgb ENSDARG00000040442 12365 0.986 - - - - - - 0.986 - - protogenin homolog b (Gallus gallus) [Source:ZFIN;Acc:ZDB-GENE-060302-1]
87. slc31a1 ENSDARG00000013961, ENSDARG00000110656 4072 0.986 - - - - - - 0.986 - - solute carrier family 31 (copper transporter), member 1 [Source:ZFIN;Acc:ZDB-GENE-040415-3]
88. shroom1 ENSDARG00000094181 2325 0.986 - - - - - - 0.986 - - shroom family member 1 [Source:ZFIN;Acc:ZDB-GENE-091204-385]
89. aplp1 ENSDARG00000098368 2317 0.986 - - - - - - 0.986 - - amyloid beta (A4) precursor-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-040319-1]
90. gid8b ENSDARG00000037589 2121 0.986 - - - - - - 0.986 - - GID complex subunit 8 homolog b (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030515-4]
91. znf740 znf740 2458 0.986 - - - - - - 0.986 - -
92. cebpg ENSDARG00000036073 3791 0.986 - - - - - - 0.986 - - CCAAT enhancer binding protein gamma [Source:ZFIN;Acc:ZDB-GENE-020111-5]
93. LURAP1 ENSDARG00000044406, ENSDARG00000115301 938 0.985 - - - - - - 0.985 - - leucine rich adaptor protein 1 [Source:ZFIN;Acc:ZDB-GENE-070928-35]
94. rbm14b ENSDARG00000103834 1597 0.985 - - - - - - 0.985 - - RNA binding motif protein 14b [Source:ZFIN;Acc:ZDB-GENE-040426-2455]
95. smcr7a smcr7a 1356 0.985 - - - - - - 0.985 - -
96. dap3 ENSDARG00000078500 2724 0.985 - - - - - - 0.985 - - death associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-051129-2]
97. zc3hc1 ENSDARG00000062651 1552 0.985 - - - - - - 0.985 - - zinc finger, C3HC-type containing 1 [Source:ZFIN;Acc:ZDB-GENE-061013-94]
98. prrc2c ENSDARG00000057583, ENSDARG00000116399 1673 0.985 - - - - - - 0.985 - - proline-rich coiled-coil 2C [Source:ZFIN;Acc:ZDB-GENE-081104-156]
99. slc38a4 ENSDARG00000018149 2344 0.985 - - - - - - 0.985 - - solute carrier family 38, member 4 [Source:ZFIN;Acc:ZDB-GENE-041010-14]
100. tp53 ENSDARG00000035559, ENSDARG00000115148 4362 0.985 - - - - - - 0.985 - - tumor protein p53 [Source:ZFIN;Acc:ZDB-GENE-990415-270]

There are 602 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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