Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for YTHDF3

Gene Name Gene ID Reads Annotation
YTHDF3 ENSGALG00000039774 170 YTH N6-methyladenosine RNA binding protein 3 [Source:NCBI gene;Acc:421145]











Genes with expression patterns similar to YTHDF3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. YTHDF3 ENSGALG00000039774 170 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 YTH N6-methyladenosine RNA binding protein 3 [Source:NCBI gene;Acc:421145]
2. AJAP1 ENSGALG00000027265 11 1 - - - - - - 1.000 - - - adherens junctions associated protein 1 [Source:HGNC Symbol;Acc:HGNC:30801]
3. SESN3 ENSGALG00000017204 7 1 - - - - - - 1.000 - - - sestrin 3, transcript variant X2
4. ENSGALG00000026637 ENSGALG00000026637 12 1 - - - - - - 1.000 - - -
5. ZHX1 ENSGALG00000034999 21 1 - - - - - - 1.000 - - - zinc fingers and homeoboxes 1 [Source:HGNC Symbol;Acc:HGNC:12871]
6. TIMP2 ENSGALG00000027070 33 1 - - - - - - 1.000 - - - TIMP metallopeptidase inhibitor 2 [Source:NCBI gene;Acc:374178]
7. RCOR1 ENSGALG00000011384 22 1 - - - - - - 1.000 - - - REST corepressor 1 [Source:HGNC Symbol;Acc:HGNC:17441]
8. UBAP1 ENSGALG00000021378 11 1 - - - - - - 1.000 - - - ubiquitin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:12461]
9. CAPN9 158 1 - - - - - - - 1.000 - - calpain 9
10. GLRA4 ENSGALG00000004936 23 1 - - - - - - 1.000 - - - glycine receptor alpha 4 [Source:HGNC Symbol;Acc:HGNC:31715]
11. ROS1 ENSGALG00000014913 7 1 - - - - - - 1.000 - - - ROS proto-oncogene 1, receptor tyrosine kinase [Source:NCBI gene;Acc:396192]
12. SNX13 ENSGALG00000010840 13 1 - - - - - - 1.000 - - - sorting nexin 13 [Source:NCBI gene;Acc:420598]
13. SUFU ENSGALG00000008096 307 1 - - - - - - 1.000 - - - SUFU negative regulator of hedgehog signaling [Source:NCBI gene;Acc:374118]
14. CNDP1 ENSGALG00000013697 7 1 - - - - - - 1.000 - - - carnosine dipeptidase 1 [Source:HGNC Symbol;Acc:HGNC:20675]
15. K123 ENSGALG00000041978 16 1 - - - - - - 1.000 - - - K123 protein [Source:NCBI gene;Acc:395873]
16. TNN ENSGALG00000004538 21 1 - - - - - - 1.000 - - - tenascin N [Source:HGNC Symbol;Acc:HGNC:22942]
17. CCL5 ENSGALG00000043603 10 1 - - - - - - 1.000 - - - chemokine (C-C motif) ligand 5 [Source:NCBI gene;Acc:417465]
18. BCMO1 BCMO1 35 1 - - - - - - 1.000 - - -
19. NOG ENSGALG00000003114 12 1 - - - - - - 1.000 - - - noggin [Source:NCBI gene;Acc:373912]
20. LRFN2 ENSGALG00000010050 28 1 - - - - - - 1.000 - - - leucine rich repeat and fibronectin type III domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21226]
21. PKN2 ENSGALG00000006237 37 1 - - - - - - 1.000 - - - protein kinase N2 [Source:HGNC Symbol;Acc:HGNC:9406]
22. Mar-04 Mar-04 7 1 - - - - - - 1.000 - - -
23. MC5R ENSGALG00000032087 2 1 - - - - - - 1.000 - - - melanocortin 5 receptor [Source:NCBI gene;Acc:421047]
24. LPAR5 ENSGALG00000014455 10 1 - - - - - - 1.000 - - - lysophosphatidic acid receptor 5 [Source:HGNC Symbol;Acc:HGNC:13307]
25. SLCO2A1 ENSGALG00000006471 18 1 - - - - - - 1.000 - - - solute carrier organic anion transporter family member 2A1 [Source:NCBI gene;Acc:424862]
26. CLRN2 ENSGALG00000027453 3 1 - - - - - - 1.000 - - - clarin 2 [Source:HGNC Symbol;Acc:HGNC:33939]
27. NDEL1 ENSGALG00000001163 16 1 - - - - - - 1.000 - - - Gallus gallus nudE neurodevelopment protein 1-like 1 (NDEL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001030696]
28. CMBL ENSGALG00000013033 3 1 - - - - - - 1.000 - - - carboxymethylenebutenolidase homolog, transcript variant X4
29. PCYT1B 190 1 - - - - - - 1.000 - - - phosphate cytidylyltransferase 1, choline, beta, transcript variant X4
30. TMTC1 ENSGALG00000012956 160 1 - - - - - - 1.000 - - - transmembrane and tetratricopeptide repeat containing 1 [Source:HGNC Symbol;Acc:HGNC:24099]
31. CSMD3 ENSGALG00000031578 23 1 - - - - - - 1.000 - - - CUB and Sushi multiple domains 3 [Source:HGNC Symbol;Acc:HGNC:19291]
32. JDP2 ENSGALG00000010322 11 1 - - - - - - 1.000 - - - Jun dimerization protein 2 [Source:NCBI gene;Acc:423363]
33. OBSL1 ENSGALG00000011242 22 1 - - - - - - 1.000 - - - obscurin like 1 [Source:HGNC Symbol;Acc:HGNC:29092]
34. COL25A1 ENSGALG00000039411 5 1 - - - - - - 1.000 - - - collagen type XXV alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:18603]
35. ENSGALG00000027169 ENSGALG00000027169 2 1 - - - - - - 1.000 - - -
36. GAB3 ENSGALG00000008408 19 1 - - - - - - 1.000 - - - GRB2 associated binding protein 3 [Source:HGNC Symbol;Acc:HGNC:17515]
37. C1orf168 C1orf168 98 1 - - - - - - 1.000 - - -
38. SLC25A22 ENSGALG00000039335 2 1 - - - - - - 1.000 - - - solute carrier family 25 member 22 [Source:NCBI gene;Acc:429678]
39. TPO ENSGALG00000016370 98 1 - - - - - - 1.000 - - - thyroid peroxidase [Source:HGNC Symbol;Acc:HGNC:12015]
40. FAM60A FAM60A 109 1 - - - - - - 1.000 - - -
41. FPGT ENSGALG00000026958 788 1 - - - - - - - 1.000 - - fucose-1-phosphate guanylyltransferase [Source:NCBI gene;Acc:100533998]
42. ENSGALG00000006384 ENSGALG00000006384 3 1 - - - - - - 1.000 - - -
43. NUAK1 ENSGALG00000012662 411 1 - - - - - - 1.000 - - - NUAK family kinase 1 [Source:HGNC Symbol;Acc:HGNC:14311]
44. ARHGDIG ENSGALG00000036819 18 1 - - - - - - 1.000 - - - Rho GDP dissociation inhibitor gamma [Source:HGNC Symbol;Acc:HGNC:680]
45. TOR1B TOR1B 197 1 - - - - - - - 1.000 - -
46. NCS1 ENSGALG00000012710 1104 1 - - - - - - - 1.000 - - neuronal calcium sensor 1 [Source:NCBI gene;Acc:396336]
47. MMP9 ENSGALG00000006992 78 1 - - - - - - 1.000 - - - matrix metallopeptidase 9 [Source:NCBI gene;Acc:395387]
48. ENSGALG00000027796 ENSGALG00000027796 7 1 - - - - - - 1.000 - - -
49. TNFRSF9 9 1 - - - - - - 1.000 - - - tumor necrosis factor receptor superfamily member 9
50. CA8 ENSGALG00000039145 109 1 - - - - - - 1.000 - - - carbonic anhydrase 8 [Source:HGNC Symbol;Acc:HGNC:1382]
51. SLC26A8 ENSGALG00000040498 253 1 - - - - - - - 1.000 - - solute carrier family 26 member 8 [Source:HGNC Symbol;Acc:HGNC:14468]
52. FZD10 ENSGALG00000042003 11 1 - - - - - - 1.000 - - - frizzled class receptor 10 [Source:NCBI gene;Acc:373885]
53. STARD10 ENSGALG00000002577 245 1 - - - - - - 1.000 - - - StAR related lipid transfer domain containing 10
54. SORCS2 ENSGALG00000015554 7 1 - - - - - - 1.000 - - - sortilin related VPS10 domain containing receptor 2 [Source:HGNC Symbol;Acc:HGNC:16698]
55. FAM208B 24 1 - - - - - - 1.000 - - - family with sequence similarity 208 member B, transcript variant X3
56. LOC420160 ENSGALG00000004252 188 0.999 - - - - - - - 0.999 - - cathepsin L1-like, transcript variant X3
57. NKX-6.2 NKX-6.2 1370 0.999 - - - - - - - 0.999 - -
58. RASGEF1B 2014 0.999 - - - - - - - 0.999 - - RasGEF domain family member 1B, transcript variant X8
59. FTSJ2 FTSJ2 2951 0.999 - - - - - - - 0.999 - -
60. WNK2 ENSGALG00000038850 4712 0.998 - - - - - - - 0.998 - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
61. ENSGALG00000001591 ENSGALG00000001591 784 0.998 - - - - - - - 0.998 - -
62. VASH1 ENSGALG00000043036 1235 0.998 - - - - - - - 0.998 - - vasohibin 1 [Source:HGNC Symbol;Acc:HGNC:19964]
63. KPNA4 ENSGALG00000009549 3674 0.998 - - - - - - - 0.998 - - karyopherin subunit alpha 4 [Source:NCBI gene;Acc:425012]
64. NR3C2 ENSGALG00000010035 603 0.997 - - - - - - - 0.997 - - nuclear receptor subfamily 3 group C member 2 [Source:NCBI gene;Acc:374131]
65. CAPRIN2 1473 0.997 - - - - - - - 0.997 - - caprin family member 2, transcript variant X7
66. SETD2 ENSGALG00000042051 2981 0.997 - - - - - - - 0.997 - - SET domain containing 2 [Source:HGNC Symbol;Acc:HGNC:18420]
67. SLX4 ENSGALG00000031841 1208 0.996 - - - - - - - 0.996 - - SLX4 structure-specific endonuclease subunit [Source:HGNC Symbol;Acc:HGNC:23845]
68. LIPA ENSGALG00000006378 4414 0.996 - - - - - - - 0.996 - - lipase A, lysosomal acid type [Source:HGNC Symbol;Acc:HGNC:6617]
69. TBCE ENSGALG00000013950 3076 0.995 - - - - - - - 0.995 - - tubulin folding cofactor E
70. GNE ENSGALG00000015331 1577 0.995 - - - - - - - 0.995 - - glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase [Source:NCBI gene;Acc:427285]
71. SEMA3F ENSGALG00000029621 2079 0.994 - - - - - - - 0.994 - - semaphorin 3F [Source:NCBI gene;Acc:374109]
72. GNB1L ENSGALG00000001925 1981 0.993 - - - - - - - 0.993 - - G protein subunit beta 1 like [Source:NCBI gene;Acc:416781]
73. AARSD1 ENSGALG00000002880 3068 0.992 - - - - - - - 0.992 - - Gallus gallus alanyl-tRNA synthetase domain containing 1 (AARSD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001328355]
74. HIP1R ENSGALG00000031511 1981 0.992 - - - - - - - 0.992 - - huntingtin interacting protein 1 related [Source:NCBI gene;Acc:416836]
75. PLA2G7 ENSGALG00000016713 2100 0.992 - - - - - - - 0.992 - - phospholipase A2 group VII [Source:NCBI gene;Acc:395816]
76. FNTA ENSGALG00000015397 3741 0.991 - - - - - - - 0.991 - - farnesyltransferase, CAAX box, alpha [Source:HGNC Symbol;Acc:HGNC:3782]
77. HMOX1 ENSGALG00000012550 1186 0.99 - - - - - - - 0.990 - - heme oxygenase 1 [Source:NCBI gene;Acc:396287]
78. CXorf23 1582 0.99 - - - - - - - 0.990 - - chromosome X open reading frame 23, transcript variant X3
79. ENSGALG00000005615 ENSGALG00000005615 4354 0.989 - - - - - - - 0.989 - -
80. FGD5 ENSGALG00000008546 4031 0.989 - - - - - - - 0.989 - - FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
81. TLN2 2295 0.989 - - - - - - - 0.989 - - talin 2, transcript variant X5
82. CHST2 ENSGALG00000034507 6172 0.988 - - - - - - - 0.988 - - carbohydrate sulfotransferase 2 [Source:HGNC Symbol;Acc:HGNC:1970]
83. BKJ ENSGALG00000030478, ENSGALG00000031115, ENSGALG00000032838, ENSGALG00000035763, ENSGALG00000038477, ENSGALG00000039526, ENSGALG00000041545 14 0.987 - - - - - 0.987 - - - - beta-keratin related protein, transcript variant X1
84. ENSGALG00000004223 ENSGALG00000004223 7 0.987 - - - - - 0.987 - - - -
85. C2CD2 ENSGALG00000016148 2734 0.986 - - - - - - - 0.986 - - C2 calcium dependent domain containing 2 [Source:HGNC Symbol;Acc:HGNC:1266]
86. PAM16 9684 0.986 - - - - - - - 0.986 - - presequence translocase associated motor 16 homolog, transcript variant X2
87. EXOSC1 ENSGALG00000039917 5259 0.986 - - - - - - - 0.986 - - exosome component 1 [Source:HGNC Symbol;Acc:HGNC:17286]
88. MAP4K5 ENSGALG00000012321 3036 0.986 - - - - - - - 0.986 - - mitogen-activated protein kinase kinase kinase kinase 5 [Source:HGNC Symbol;Acc:HGNC:6867]
89. ENSGALG00000011658 ENSGALG00000011658 1 0.985 - - - - - 0.985 - - - -
90. GJA10 ENSGALG00000015606 1 0.985 - - - - - 0.985 - - - - gap junction protein, alpha 10, 62kDa
91. gga-mir-1647 ENSGALG00000025382 4 0.985 - - - - - 0.985 - - - - gga-mir-1647 [Source:miRBase;Acc:MI0007379]
92. CCSER1 ENSGALG00000039674 14 0.985 - - - - - 0.985 - - - - coiled-coil serine rich protein 1, transcript variant X3
93. C5orf63 C5orf63 3718 0.985 - - - - - - - 0.985 - -
94. CYTH4 ENSGALG00000012454 12 0.985 - - - - - 0.985 - - - - cytohesin 4 [Source:NCBI gene;Acc:418043]
95. XG ENSGALG00000029002 17 0.985 - - - - - 0.985 - - - - Xg blood group
96. DOLK ENSGALG00000026007 6 0.985 - - - - - 0.985 - - - - dolichol kinase [Source:NCBI gene;Acc:417199]
97. GPR22 ENSGALG00000008032 5 0.985 - - - - - 0.985 - - - - G protein-coupled receptor 22, transcript variant X1
98. SLC2A1 ENSGALG00000004889 10 0.985 - - - - - 0.985 - - - - solute carrier family 2 member 1 [Source:NCBI gene;Acc:396130]
99. SNORD65 SNORD65 3 0.985 - - - - - 0.985 - - - -
100. RNF6 ENSGALG00000017105 11 0.985 - - - - - 0.985 - - - - ring finger protein 6 [Source:HGNC Symbol;Acc:HGNC:10069]

There are 207 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA