Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for YBX3

Gene Name Gene ID Reads Annotation
YBX3 ENSGALG00000031890 819 Y-box binding protein 3 [Source:NCBI gene;Acc:396371]











Genes with expression patterns similar to YBX3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. YBX3 ENSGALG00000031890 819 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Y-box binding protein 3 [Source:NCBI gene;Acc:396371]
2. MIB1 ENSGALG00000014974 3583 2.681 - - 0.923 - - - - - 0.889 0.869 mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
3. DCP1B 1306 1.853 - - 0.928 - - - - - 0.925 - decapping mRNA 1B
4. ZDHHC7 ENSGALG00000042522 1774 1.847 - - 0.923 - - - - - 0.924 - zinc finger DHHC-type containing 7 [Source:HGNC Symbol;Acc:HGNC:18459]
5. SLC37A3 ENSGALG00000012849 836 1.791 - - 0.946 - - - - - 0.845 - solute carrier family 37 member 3 [Source:NCBI gene;Acc:418112]
6. RBBP8 ENSGALG00000014982 3255 1.786 - - 0.893 - - - - - 0.893 - RB binding protein 8, endonuclease [Source:HGNC Symbol;Acc:HGNC:9891]
7. KDM6A ENSGALG00000016217 2302 1.756 - - 0.925 - - - - - - 0.831 lysine demethylase 6A, transcript variant X14
8. APTX ENSGALG00000001954 692 1.755 - - 0.923 - - - - 0.832 - - aprataxin [Source:NCBI gene;Acc:395173]
9. CHAMP1 ENSGALG00000016813 508 1.748 - - 0.957 - - - - - 0.791 - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
10. RALGAPA2 240 1.744 - - 0.927 - - - - - 0.817 - Ral GTPase activating protein, alpha subunit 2 (catalytic), transcript variant X6
11. PGS1 ENSGALG00000007181 3187 1.733 - - 0.823 - - - - - 0.910 - phosphatidylglycerophosphate synthase 1 [Source:NCBI gene;Acc:422087]
12. TTPAL ENSGALG00000004244 2734 1.714 - - 0.955 - - - - - 0.759 - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
13. WDR92 ENSGALG00000008760 3934 1.708 - - 0.937 - - - - - 0.771 - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
14. LRRC71 ENSGALG00000027351 695 1.706 - - 0.954 - - - - - 0.752 - leucine rich repeat containing 71 [Source:HGNC Symbol;Acc:HGNC:26556]
15. SESN1 ENSGALG00000015286 2387 1.699 - - 0.906 - - - - - - 0.793 sestrin 1 [Source:HGNC Symbol;Acc:HGNC:21595]
16. ACOX1 ENSGALG00000002159 2953 1.687 - - 0.859 - - - - - - 0.828 acyl-CoA oxidase 1 [Source:NCBI gene;Acc:417366]
17. UHRF2 ENSGALG00000015052 1268 1.685 - - 0.892 - - - - - 0.793 - ubiquitin like with PHD and ring finger domains 2 [Source:HGNC Symbol;Acc:HGNC:12557]
18. WTAP ENSGALG00000011660 10811 1.685 - - 0.824 - - - - - 0.861 - WT1 associated protein [Source:HGNC Symbol;Acc:HGNC:16846]
19. ZNF639 ENSGALG00000005944 6387 1.684 - - 0.931 - - - - - - 0.753 zinc finger protein 639 [Source:NCBI gene;Acc:425280]
20. SNN ENSGALG00000028876 1687 1.683 - - 0.913 - - - - - - 0.770 stannin [Source:NCBI gene;Acc:416429]
21. CHGA ENSGALG00000010820 1028 1.683 - - 0.955 - - - - - 0.728 - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
22. POGZ ENSGALG00000036365 4056 1.678 - - 0.893 - - - - - 0.785 - pogo transposable element with ZNF domain, transcript variant X2
23. STAU1 ENSGALG00000004736 3828 1.666 - - 0.891 - - - - - - 0.775 staufen double-stranded RNA binding protein 1 [Source:NCBI gene;Acc:419213]
24. MBSP MBSP 5634 1.656 - - 0.896 - - - - - 0.760 -
25. ELL2 ENSGALG00000014678 1111 1.652 - - - - - - - - 0.869 0.783 elongation factor for RNA polymerase II 2 [Source:HGNC Symbol;Acc:HGNC:17064]
26. HOXB5 ENSGALG00000034907 3646 1.622 - - 0.882 - - - - - 0.740 - homeobox B5 [Source:NCBI gene;Acc:425096]
27. TAF1D ENSGALG00000017220 3012 1.62 - - 0.740 - - - - - 0.880 - TATA-box binding protein associated factor, RNA polymerase I subunit D [Source:HGNC Symbol;Acc:HGNC:28759]
28. OGFOD2 ENSGALG00000003687 1200 1.613 - - 0.874 - - - - - 0.739 - 2-oxoglutarate and iron dependent oxygenase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25823]
29. WSB2 ENSGALG00000008151 13246 1.611 - - 0.852 - - - - - - 0.759 WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
30. TPM4 ENSGALG00000002563 15621 1.606 - - 0.765 - - - - - 0.841 - tropomyosin 4 [Source:HGNC Symbol;Acc:HGNC:12013]
31. TRIM3 ENSGALG00000034004 110 1.596 - - - - - - - - 0.782 0.814 tripartite motif containing 3 [Source:HGNC Symbol;Acc:HGNC:10064]
32. DHFR ENSGALG00000026757 18478 1.595 - - 0.838 - - - - - - 0.757 dihydrofolate reductase [Source:NCBI gene;Acc:427317]
33. IWS1 ENSGALG00000001803 2305 1.585 - - 0.794 - - - - - - 0.791 IWS1, SUPT6H interacting protein [Source:HGNC Symbol;Acc:HGNC:25467]
34. AAMP ENSGALG00000011445 2528 1.581 - - 0.816 - - - - - 0.765 - angio associated migratory cell protein [Source:NCBI gene;Acc:769880]
35. NNT ENSGALG00000014869 8496 1.57 - - - - - - - - 0.773 0.797 nicotinamide nucleotide transhydrogenase [Source:HGNC Symbol;Acc:HGNC:7863]
36. NAB1 ENSGALG00000037778 3467 1.569 - - 0.795 - - - - - 0.774 - NGFI-A binding protein 1 [Source:NCBI gene;Acc:374126]
37. CEPT1 ENSGALG00000000142 4219 1.565 - - 0.814 - - - - - - 0.751 choline/ethanolamine phosphotransferase 1 [Source:NCBI gene;Acc:421152]
38. BZFP1 ENSGALG00000027546 632 1.536 - - - - - - - - 0.760 0.776 B-locus zinc finger protein 1 [Source:NCBI gene;Acc:396247]
39. ZNRF1 ENSGALG00000029017 1429 1.53 - - 0.827 - - - - - 0.703 - zinc and ring finger 1 [Source:HGNC Symbol;Acc:HGNC:18452]
40. TATDN1 ENSGALG00000041072 1585 1.524 - - - - - - - - 0.702 0.822 TatD DNase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24220]
41. ORC3 ENSGALG00000015800 4316 1.517 - - 0.792 - - - - - - 0.725 origin recognition complex subunit 3 [Source:NCBI gene;Acc:421822]
42. MRPS5 ENSGALG00000008550 1707 1.507 - - 0.746 - - - - - - 0.761 mitochondrial ribosomal protein S5 [Source:NCBI gene;Acc:416706]
43. NBN ENSGALG00000037686 648 1.502 - - - - - - - - 0.733 0.769 nibrin [Source:NCBI gene;Acc:374246]
44. SBNO1 ENSGALG00000003392 6731 1.499 - - 0.738 - - - - - - 0.761 strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
45. SCHIP1 ENSGALG00000039468 5912 1.488 - - 0.742 - - - - - 0.746 - schwannomin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:15678]
46. NR2C1 ENSGALG00000011327 5109 1.483 - - 0.763 - - - - - 0.720 - nuclear receptor subfamily 2, group C, member 1 [Source:NCBI gene;Acc:373913]
47. THOC1 ENSGALG00000014915 5846 1.461 - - 0.758 - - - - - 0.703 - Gallus gallus THO complex 1 (THOC1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001321610]
48. FAM63B 3793 1.435 - - - - - - - - 0.730 0.705 family with sequence similarity 63 member B
49. PRUNE PRUNE 452 0.966 - - 0.966 - - - - - - -
50. OSGIN2 ENSGALG00000042840 83 0.964 - - 0.964 - - - - - - - oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]
51. ABCC3 ENSGALG00000007522 340 0.964 - - 0.964 - - - - - - - ATP binding cassette subfamily C member 3, transcript variant X5
52. L3MBTL3 ENSGALG00000034030 113 0.964 - - 0.964 - - - - - - - L3MBTL3, histone methyl-lysine binding protein [Source:HGNC Symbol;Acc:HGNC:23035]
53. SZT2 ENSGALG00000028561 255 0.964 - - 0.964 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
54. DBN1 ENSGALG00000033405 216 0.964 - - 0.964 - - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
55. NXPE3 ENSGALG00000015344 111 0.963 - - 0.963 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
56. TCTN2 ENSGALG00000023683 3596 0.963 - - 0.963 - - - - - - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
57. ITM2B ENSGALG00000016996 1112 0.963 - - 0.963 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
58. U4 U4 69 0.962 - - 0.962 - - - - - - -
59. ENSGALG00000020103 ENSGALG00000020103 64 0.962 - - 0.962 - - - - - - -
60. F2R ENSGALG00000014983 106 0.962 - - 0.962 - - - - - - - coagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]
61. LRRC42 ENSGALG00000010743 384 0.962 - - 0.962 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
62. UEVLD ENSGALG00000006342 164 0.962 - - 0.962 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
63. CEP104 ENSGALG00000000978 1130 0.962 - - 0.962 - - - - - - - centrosomal protein 104 [Source:HGNC Symbol;Acc:HGNC:24866]
64. ENSGALG00000002020 ENSGALG00000002020 183 0.962 - - 0.962 - - - - - - -
65. BBX ENSGALG00000015353 1281 0.962 - - 0.962 - - - - - - - BBX, HMG-box containing [Source:HGNC Symbol;Acc:HGNC:14422]
66. FBXL5 ENSGALG00000014510 245 0.961 - - 0.961 - - - - - - - F-box and leucine rich repeat protein 5 [Source:HGNC Symbol;Acc:HGNC:13602]
67. ITGB4 ENSGALG00000002389 44 0.961 - - 0.961 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
68. ENSGALG00000004703 ENSGALG00000004703 112 0.961 - - 0.961 - - - - - - -
69. ABCE1 ENSGALG00000009961 958 0.961 - - 0.961 - - - - - - - ATP binding cassette subfamily E member 1 [Source:NCBI gene;Acc:422462]
70. ENSGALG00000028964 ENSGALG00000028964 46 0.961 - - 0.961 - - - - - - -
71. PTDSS2 ENSGALG00000004300 682 0.961 - - 0.961 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
72. TDRD6 48 0.961 - - 0.961 - - - - - - - tudor domain containing 6
73. MRC2 ENSGALG00000000461 48 0.961 - - 0.961 - - - - - - - mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
74. CDC14B ENSGALG00000012627 110 0.96 - - 0.960 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
75. MED12 ENSGALG00000036322 814 0.96 - - 0.960 - - - - - - - mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
76. SMARCAD1 ENSGALG00000037339 149 0.96 - - 0.960 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
77. RQCD1 RQCD1 110 0.96 - - 0.960 - - - - - - -
78. TRIM13 ENSGALG00000017011 92 0.96 - - 0.960 - - - - - - - tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
79. NDUFB1 ENSGALG00000028537 2059 0.959 - - 0.959 - - - - - - - NADH:ubiquinone oxidoreductase subunit B1 [Source:NCBI gene;Acc:423415]
80. ATP8B4 ENSGALG00000002326 456 0.959 - - 0.959 - - - - - - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
81. RAD54L2 ENSGALG00000003243 187 0.959 - - 0.959 - - - - - - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
82. SLC3A1 ENSGALG00000009973 608 0.959 - - 0.959 - - - - - - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
83. AKAP10 ENSGALG00000004679 103 0.959 - - 0.959 - - - - - - - A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
84. GTF2H2 ENSGALG00000002399 2361 0.958 - - 0.958 - - - - - - - general transcription factor IIH subunit 2, transcript variant X2
85. ADK ENSGALG00000005057 199 0.958 - - 0.958 - - - - - - - adenosine kinase [Source:NCBI gene;Acc:423735]
86. CLEC16A ENSGALG00000007167 66 0.958 - - 0.958 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
87. CAMSAP1 ENSGALG00000001692 2617 0.957 - - 0.957 - - - - - - - calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
88. SNX14 ENSGALG00000015831 2554 0.957 - - 0.957 - - - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
89. BBS5 ENSGALG00000009846 344 0.956 - - 0.956 - - - - - - - Bardet-Biedl syndrome 5 [Source:NCBI gene;Acc:424165]
90. RPS6KB1 ENSGALG00000005198 169 0.956 - - 0.956 - - - - - - - ribosomal protein S6 kinase B1 [Source:NCBI gene;Acc:417637]
91. KCTD3 ENSGALG00000009678 335 0.956 - - 0.956 - - - - - - - potassium channel tetramerization domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21305]
92. TUBGCP3 ENSGALG00000016836 332 0.956 - - 0.956 - - - - - - - tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
93. ENSGALG00000008689 ENSGALG00000008689 232 0.955 - - 0.955 - - - - - - -
94. GDPD4 ENSGALG00000000690 824 0.955 - - 0.955 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
95. IFT81 ENSGALG00000003854 2534 0.954 - - 0.954 - - - - - - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
96. RAD1 ENSGALG00000003365 1417 0.954 - - 0.954 - - - - - - - RAD1 checkpoint DNA exonuclease [Source:HGNC Symbol;Acc:HGNC:9806]
97. MLLT3 ENSGALG00000015078 502 0.954 - - 0.954 - - - - - - - MLLT3, super elongation complex subunit [Source:HGNC Symbol;Acc:HGNC:7136]
98. FAM134C 860 0.952 - - 0.952 - - - - - - - family with sequence similarity 134 member C
99. TMEM242 ENSGALG00000013689 377 0.95 - - 0.950 - - - - - - - transmembrane protein 242 [Source:HGNC Symbol;Acc:HGNC:17206]
100. AASDHPPT ENSGALG00000027981 1017 0.949 - - 0.949 - - - - - - - aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]

There are 945 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA