Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for YBX1

Gene Name Gene ID Reads Annotation
YBX1 ENSGALG00000004848 20992 Y-box binding protein 1 [Source:NCBI gene;Acc:386575]











Genes with expression patterns similar to YBX1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. YBX1 ENSGALG00000004848 20992 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
2. THOC2 ENSGALG00000008507 9501 2.574 0.731 - 0.870 - - - 0.973 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
3. ATRX ENSGALG00000007843 34172 2.32 0.712 - 0.743 - - - 0.865 - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
4. ENSGALG00000027854 ENSGALG00000027854 5007 1.876 - - - - 0.907 - 0.969 - - -
5. TM9SF3 ENSGALG00000005534 15290 1.862 - - - - 0.901 - 0.961 - - - transmembrane 9 superfamily member 3
6. PSMG3 ENSGALG00000004203 11240 1.837 - - - - 0.923 - 0.914 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
7. NARS ENSGALG00000040506 9506 1.799 - - - - 0.906 - 0.893 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
8. EIF4G3 ENSGALG00000010084 5881 1.726 - - 0.741 - - - 0.985 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
9. MINOS1 ENSGALG00000004039 37740 1.696 - - - - 0.894 - 0.802 - - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
10. VMP1 ENSGALG00000005160 12859 1.68 - - - - 0.884 - 0.796 - - - vacuole membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29559]
11. MFGE8 ENSGALG00000006702 6976 1.661 - - - - - - 0.921 - 0.740 - milk fat globule-EGF factor 8 protein [Source:NCBI gene;Acc:415494]
12. SPEN ENSGALG00000036932 9688 1.63 0.703 - - - 0.927 - - - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
13. CREB3L2 ENSGALG00000012877 2515 1.618 0.776 - 0.842 - - - - - - - cAMP responsive element binding protein 3 like 2 [Source:HGNC Symbol;Acc:HGNC:23720]
14. KPNA2 ENSGALG00000003584 76058 1.585 - - 0.700 - 0.885 - - - - - karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
15. SPTBN1 ENSGALG00000029512 18579 1.576 0.772 - - - - - 0.804 - - - spectrin beta, non-erythrocytic 1 [Source:NCBI gene;Acc:421216]
16. ARHGAP5 ENSGALG00000009992 3485 1.574 0.701 - 0.873 - - - - - - - Rho GTPase activating protein 5 [Source:HGNC Symbol;Acc:HGNC:675]
17. STK4 ENSGALG00000004098 11366 1.562 - - - - 0.833 - 0.729 - - - serine/threonine kinase 4 [Source:NCBI gene;Acc:419187]
18. MAP1B ENSGALG00000014999 6288 1.555 0.729 - 0.826 - - - - - - - microtubule associated protein 1B
19. RDX ENSGALG00000017153 6734 1.532 0.774 - 0.758 - - - - - - - radixin [Source:NCBI gene;Acc:395511]
20. EVI5 4722 1.532 - - - - - - - 0.797 0.735 - ecotropic viral integration site 5, transcript variant X1
21. HK1 ENSGALG00000004222 10733 1.498 - - 0.765 - - - 0.733 - - - hexokinase 1 [Source:NCBI gene;Acc:373889]
22. SRSF11 ENSGALG00000011305 10435 1.458 0.753 - 0.705 - - - - - - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
23. LBR 6686 1.454 0.707 - 0.747 - - - - - - - lamin B receptor, transcript variant X4
24. TET1 ENSGALG00000031604 13002 1.451 0.722 - - - - - - - 0.729 - tet methylcytosine dioxygenase 1 [Source:HGNC Symbol;Acc:HGNC:29484]
25. METTL11A METTL11A 11876 0.985 - - - - - - 0.985 - - -
26. SHQ1 ENSGALG00000007798 1982 0.982 - - - - - - 0.982 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
27. ARID4A ENSGALG00000012037 8554 0.982 - - - - - - 0.982 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
28. MYST2 MYST2 8078 0.981 - - - - - - 0.981 - - -
29. DNAJA3 ENSGALG00000007821 3963 0.981 - - - - - - 0.981 - - - DnaJ heat shock protein family (Hsp40) member A3 [Source:HGNC Symbol;Acc:HGNC:11808]
30. EI24 ENSGALG00000038097 24081 0.978 - - - - - - 0.978 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
31. LMNB2 ENSGALG00000000470 4364 0.978 - - - - - - 0.978 - - - lamin B2 [Source:NCBI gene;Acc:396222]
32. PPP3R1 ENSGALG00000023648 3417 0.977 - - - - - - 0.977 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
33. ATN1 ENSGALG00000014554 3270 0.977 - - - - - - 0.977 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
34. RILPL2 ENSGALG00000003321 5632 0.977 - - - - - - 0.977 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
35. LEPROTL1 ENSGALG00000024482 4251 0.976 - - - - - - 0.976 - - - leptin receptor overlapping transcript-like 1
36. PNO1 ENSGALG00000009093 11153 0.976 - - - - - - 0.976 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
37. ARHGAP29 ENSGALG00000005683 3622 0.976 - - - - - - 0.976 - - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
38. BFAR ENSGALG00000003111 1778 0.976 - - - - - - 0.976 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
39. CAMKK2 ENSGALG00000040131 2795 0.976 - - - - - - 0.976 - - - calcium/calmodulin dependent protein kinase kinase 2, transcript variant X9
40. GCC2 ENSGALG00000016806 1085 0.975 - - - - - - 0.975 - - - GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
41. HACE1 ENSGALG00000015415 1194 0.975 - - - - - - 0.975 - - - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421788]
42. SREBF2 ENSGALG00000041687 4519 0.975 - - - - - - 0.975 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]
43. MAP1LC3A ENSGALG00000038721 2230 0.975 - - - - - - 0.975 - - - microtubule associated protein 1 light chain 3 alpha
44. IRAK2 ENSGALG00000008407 5934 0.975 - - - - - - 0.975 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
45. CETN2 ENSGALG00000007510 1688 0.973 - - - - - - 0.973 - - - centrin 2 [Source:NCBI gene;Acc:422303]
46. RBBP6 ENSGALG00000006043 9708 0.973 - - - - - - 0.973 - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
47. SLC1A1 ENSGALG00000010187 637 0.972 - - - - - - 0.972 - - - solute carrier family 1 member 1 [Source:HGNC Symbol;Acc:HGNC:10939]
48. ENSGALG00000002923 ENSGALG00000002923 2233 0.972 - - - - - - 0.972 - - -
49. CCND1 ENSGALG00000007555 6715 0.972 - - - - - - 0.972 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
50. KCTD9 ENSGALG00000000275 3455 0.972 - - - - - - 0.972 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
51. UBAC1 ENSGALG00000042564 598 0.971 - - - - - - 0.971 - - - UBA domain containing 1 [Source:NCBI gene;Acc:427754]
52. TBCCD1 ENSGALG00000006566 2696 0.971 - - - - - - 0.971 - - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
53. CLCN3 ENSGALG00000009674 3704 0.971 - - - - - - 0.971 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
54. KLHL29 ENSGALG00000016495 582 0.971 - - - - - - 0.971 - - - kelch like family member 29 [Source:HGNC Symbol;Acc:HGNC:29404]
55. AP2B1 ENSGALG00000042125 13229 0.971 - - - - - - 0.971 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
56. MOB2 ENSGALG00000030499 3658 0.97 - - - - - - 0.970 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
57. AK6 ENSGALG00000020534 4791 0.97 - - - - - - 0.970 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
58. DNA2 ENSGALG00000004037 5426 0.969 - - - - - - 0.969 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
59. LATS2 4776 0.969 - - - - - - 0.969 - - - large tumor suppressor kinase 2
60. POPDC3 ENSGALG00000027420 700 0.969 - - - - - - 0.969 - - - popeye domain containing 3 [Source:NCBI gene;Acc:395434]
61. ABCD3 ENSGALG00000005647 4844 0.969 - - - - - - 0.969 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
62. MTFMT ENSGALG00000007353 805 0.969 - - - - - - 0.969 - - - mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:HGNC:29666]
63. RRN3 ENSGALG00000041989 3934 0.969 - - - - - - 0.969 - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
64. DISP1 3281 0.969 - - - - - - 0.969 - - - dispatched RND transporter family member 1, transcript variant X3
65. NDUFB8 ENSGALG00000005704 5781 0.969 - - - - - - 0.969 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
66. POLR3E ENSGALG00000007008 4010 0.968 - - - - - - 0.968 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
67. RBM12B ENSGALG00000035129 4314 0.968 - - - - - - 0.968 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
68. SDCCAG8 ENSGALG00000010713 311 0.968 - - - - - - 0.968 - - - serologically defined colon cancer antigen 8, transcript variant X5
69. BCAS1 ENSGALG00000007796 379 0.968 - - - - - - 0.968 - - - breast carcinoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:974]
70. NPHP3 ENSGALG00000034586 1465 0.968 - - - - - - 0.968 - - - nephrocystin 3, transcript variant X1
71. H2AFY_1 ENSGALG00000040141 4895 0.968 - - - - - - 0.968 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
72. AKAP7 ENSGALG00000029794 3287 0.967 - - - - - - 0.967 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
73. INTS10 ENSGALG00000010130 6320 0.967 - - - - - - 0.967 - - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
74. gga-mir-6643 ENSGALG00000027935 4442 0.967 - - - - - - 0.967 - - - gga-mir-6643 [Source:miRBase;Acc:MI0022462]
75. SCRN1 ENSGALG00000011176 3783 0.967 - - - - - - 0.967 - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
76. MOB1B ENSGALG00000011573 567 0.965 - - - - - - 0.965 - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
77. ATE1 ENSGALG00000009502 3751 0.964 - - - - - - 0.964 - - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
78. NCOA4 ENSGALG00000002066 10544 0.961 - - - - - - 0.961 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
79. E2F6 ENSGALG00000016454 4747 0.96 - - - - - - 0.960 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
80. MED6 ENSGALG00000029743 9414 0.96 - - - - - - 0.960 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
81. LACTB2 ENSGALG00000038745 3460 0.96 - - - - - - 0.960 - - - lactamase beta 2 [Source:NCBI gene;Acc:420178]
82. TMEM108 ENSGALG00000036412 2903 0.959 - - - - - - 0.959 - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
83. MSRA ENSGALG00000028032 2607 0.958 - - - - - - 0.958 - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
84. SEMA4B ENSGALG00000008297 11202 0.956 - - - - - - 0.956 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
85. ARNT2 ENSGALG00000006445 7050 0.956 - - - - - - 0.956 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
86. OGFOD1 6926 0.956 - - - - - - 0.956 - - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
87. XRN1 ENSGALG00000002706 4014 0.955 - - - - - - 0.955 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
88. BPTF ENSGALG00000038222 7521 0.955 - - - - - - 0.955 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
89. MRE11A MRE11A 5754 0.954 - - - - - - 0.954 - - -
90. ZMYND11 ENSGALG00000006599 5740 0.954 - - - - - - 0.954 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
91. IMPACT ENSGALG00000015093 1334 0.952 - - - - - - 0.952 - - - impact RWD domain protein [Source:HGNC Symbol;Acc:HGNC:20387]
92. RPA1 ENSGALG00000003072 8023 0.951 - - - - - - 0.951 - - - replication protein A1 [Source:NCBI gene;Acc:417563]
93. MED7 ENSGALG00000003870 4244 0.951 - - - - - - 0.951 - - - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]
94. NDUFA9 ENSGALG00000017282 14358 0.949 - - - - - - 0.949 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
95. SDF4 ENSGALG00000001872 6382 0.946 - - - - - - 0.946 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
96. POLA1 ENSGALG00000016312 9440 0.944 - - - - - - 0.944 - - - DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]
97. BTAF1 ENSGALG00000030598 3556 0.942 - - - - - - 0.942 - - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
98. PRCP ENSGALG00000037521 4012 0.941 - - - - - - 0.941 - - - prolylcarboxypeptidase [Source:HGNC Symbol;Acc:HGNC:9344]
99. GFM1 ENSGALG00000009634 7213 0.941 - - - - - - 0.941 - - - G elongation factor mitochondrial 1 [Source:HGNC Symbol;Acc:HGNC:13780]
100. SLC25A14 ENSGALG00000004063 5574 0.941 - - - - - - 0.941 - - - solute carrier family 25 member 14 [Source:NCBI gene;Acc:422141]

There are 372 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA