Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for XRN1

Gene Name Gene ID Reads Annotation
XRN1 ENSGALG00000002706 4014 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]











Genes with expression patterns similar to XRN1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. XRN1 ENSGALG00000002706 4014 9 1.000 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
2. UTP3 ENSGALG00000011553 8814 1.778 - - - - - - 0.915 0.863 - - UTP3, small subunit processome component homolog (S. cerevisiae)
3. OGFOD1 6926 1.737 - - - - - - 0.941 0.796 - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
4. SIRT1 ENSGALG00000002761 9028 1.732 - - - - - - 0.941 0.791 - - sirtuin 1 [Source:NCBI gene;Acc:423646]
5. RBM12B ENSGALG00000035129 4314 1.713 - - - - - - 0.952 0.761 - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
6. UPF1 ENSGALG00000003220 9496 1.702 - - - - - - 0.943 0.759 - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
7. CREPT CREPT 17142 1.682 - - - - - - 0.807 0.875 - -
8. COPE ENSGALG00000003153 19444 1.664 - - - - - - 0.915 0.749 - - coatomer protein complex subunit epsilon [Source:NCBI gene;Acc:420117]
9. MCM4 ENSGALG00000012915 13151 1.617 - - - - - - 0.758 0.859 - - minichromosome maintenance complex component 4
10. FAM96B 14435 1.481 - - - - - - 0.755 0.726 - - family with sequence similarity 96 member B
11. ATE1 ENSGALG00000009502 3751 0.975 - - - - - - 0.975 - - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
12. EI24 ENSGALG00000038097 24081 0.971 - - - - - - 0.971 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
13. MRE11A MRE11A 5754 0.97 - - - - - - 0.970 - - -
14. RPA1 ENSGALG00000003072 8023 0.97 - - - - - - 0.970 - - - replication protein A1 [Source:NCBI gene;Acc:417563]
15. PPP3R1 ENSGALG00000023648 3417 0.965 - - - - - - 0.965 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
16. CENPF ENSGALG00000009690 10429 0.965 - - - - - - 0.965 - - - centromere protein F [Source:NCBI gene;Acc:395357]
17. RILPL2 ENSGALG00000003321 5632 0.963 - - - - - - 0.963 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
18. ZMYND11 ENSGALG00000006599 5740 0.96 - - - - - - 0.960 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
19. TM9SF3 ENSGALG00000005534 15290 0.957 - - - - - - 0.957 - - - transmembrane 9 superfamily member 3
20. MAP1LC3A ENSGALG00000038721 2230 0.957 - - - - - - 0.957 - - - microtubule associated protein 1 light chain 3 alpha
21. AKAP7 ENSGALG00000029794 3287 0.956 - - - - - - 0.956 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
22. TMEM108 ENSGALG00000036412 2903 0.956 - - - - - - 0.956 - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
23. KCTD9 ENSGALG00000000275 3455 0.956 - - - - - - 0.956 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
24. YBX1 ENSGALG00000004848 20992 0.955 - - - - - - 0.955 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
25. MYST2 MYST2 8078 0.954 - - - - - - 0.954 - - -
26. NDUFA9 ENSGALG00000017282 14358 0.954 - - - - - - 0.954 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
27. ARID4A ENSGALG00000012037 8554 0.953 - - - - - - 0.953 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
28. THOC2 ENSGALG00000008507 9501 0.953 - - - - - - 0.953 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
29. SCRN1 ENSGALG00000011176 3783 0.952 - - - - - - 0.952 - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
30. BFAR ENSGALG00000003111 1778 0.952 - - - - - - 0.952 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
31. TBCCD1 ENSGALG00000006566 2696 0.951 - - - - - - 0.951 - - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
32. IRAK2 ENSGALG00000008407 5934 0.951 - - - - - - 0.951 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
33. ABCD3 ENSGALG00000005647 4844 0.95 - - - - - - 0.950 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
34. ARHGAP29 ENSGALG00000005683 3622 0.95 - - - - - - 0.950 - - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
35. SDF4 ENSGALG00000001872 6382 0.949 - - - - - - 0.949 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
36. EIF4G3 ENSGALG00000010084 5881 0.949 - - - - - - 0.949 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
37. ATN1 ENSGALG00000014554 3270 0.949 - - - - - - 0.949 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
38. H2AFY_1 ENSGALG00000040141 4895 0.949 - - - - - - 0.949 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
39. E2F6 ENSGALG00000016454 4747 0.948 - - - - - - 0.948 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
40. MOB2 ENSGALG00000030499 3658 0.948 - - - - - - 0.948 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
41. DNA2 ENSGALG00000004037 5426 0.948 - - - - - - 0.948 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
42. SREBF2 ENSGALG00000041687 4519 0.948 - - - - - - 0.948 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]
43. MED6 ENSGALG00000029743 9414 0.947 - - - - - - 0.947 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
44. SHQ1 ENSGALG00000007798 1982 0.947 - - - - - - 0.947 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
45. LMNB2 ENSGALG00000000470 4364 0.947 - - - - - - 0.947 - - - lamin B2 [Source:NCBI gene;Acc:396222]
46. RBBP6 ENSGALG00000006043 9708 0.947 - - - - - - 0.947 - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
47. AP2B1 ENSGALG00000042125 13229 0.947 - - - - - - 0.947 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
48. MOB1B ENSGALG00000011573 567 0.947 - - - - - - 0.947 - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
49. PPIF ENSGALG00000004809 5586 0.947 - - - - - - 0.947 - - - peptidylprolyl isomerase F [Source:NCBI gene;Acc:423723]
50. METTL11A METTL11A 11876 0.946 - - - - - - 0.946 - - -
51. HACE1 ENSGALG00000015415 1194 0.945 - - - - - - 0.945 - - - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421788]
52. LATS2 4776 0.945 - - - - - - 0.945 - - - large tumor suppressor kinase 2
53. POLR3E ENSGALG00000007008 4010 0.945 - - - - - - 0.945 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
54. LEPROTL1 ENSGALG00000024482 4251 0.945 - - - - - - 0.945 - - - leptin receptor overlapping transcript-like 1
55. DISP1 3281 0.945 - - - - - - 0.945 - - - dispatched RND transporter family member 1, transcript variant X3
56. ARNT2 ENSGALG00000006445 7050 0.944 - - - - - - 0.944 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
57. NCOA4 ENSGALG00000002066 10544 0.944 - - - - - - 0.944 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
58. SOD2 ENSGALG00000011661 13178 0.943 - - - - - - 0.943 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
59. IMPACT ENSGALG00000015093 1334 0.943 - - - - - - 0.943 - - - impact RWD domain protein [Source:HGNC Symbol;Acc:HGNC:20387]
60. ENSGALG00000027854 ENSGALG00000027854 5007 0.943 - - - - - - 0.943 - - -
61. LACTB2 ENSGALG00000038745 3460 0.943 - - - - - - 0.943 - - - lactamase beta 2 [Source:NCBI gene;Acc:420178]
62. BPTF ENSGALG00000038222 7521 0.941 - - - - - - 0.941 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
63. BTAF1 ENSGALG00000030598 3556 0.939 - - - - - - 0.939 - - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
64. CLCN3 ENSGALG00000009674 3704 0.938 - - - - - - 0.938 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
65. CAMKK2 ENSGALG00000040131 2795 0.938 - - - - - - 0.938 - - - calcium/calmodulin dependent protein kinase kinase 2, transcript variant X9
66. DNAJA3 ENSGALG00000007821 3963 0.938 - - - - - - 0.938 - - - DnaJ heat shock protein family (Hsp40) member A3 [Source:HGNC Symbol;Acc:HGNC:11808]
67. gga-mir-6643 ENSGALG00000027935 4442 0.937 - - - - - - 0.937 - - - gga-mir-6643 [Source:miRBase;Acc:MI0022462]
68. CETN2 ENSGALG00000007510 1688 0.937 - - - - - - 0.937 - - - centrin 2 [Source:NCBI gene;Acc:422303]
69. MSRA ENSGALG00000028032 2607 0.937 - - - - - - 0.937 - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
70. INTS10 ENSGALG00000010130 6320 0.936 - - - - - - 0.936 - - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
71. PNO1 ENSGALG00000009093 11153 0.936 - - - - - - 0.936 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
72. SLC1A1 ENSGALG00000010187 637 0.936 - - - - - - 0.936 - - - solute carrier family 1 member 1 [Source:HGNC Symbol;Acc:HGNC:10939]
73. NDUFB8 ENSGALG00000005704 5781 0.936 - - - - - - 0.936 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
74. DYNC1LI1 ENSGALG00000011491 11011 0.936 - - - - - - 0.936 - - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
75. RRN3 ENSGALG00000041989 3934 0.936 - - - - - - 0.936 - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
76. AK6 ENSGALG00000020534 4791 0.935 - - - - - - 0.935 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
77. ENSGALG00000002923 ENSGALG00000002923 2233 0.934 - - - - - - 0.934 - - -
78. POLA1 ENSGALG00000016312 9440 0.933 - - - - - - 0.933 - - - DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]
79. BCAS1 ENSGALG00000007796 379 0.933 - - - - - - 0.933 - - - breast carcinoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:974]
80. MTFMT ENSGALG00000007353 805 0.933 - - - - - - 0.933 - - - mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:HGNC:29666]
81. KLHL29 ENSGALG00000016495 582 0.932 - - - - - - 0.932 - - - kelch like family member 29 [Source:HGNC Symbol;Acc:HGNC:29404]
82. SF3A3 ENSGALG00000001540 9664 0.931 - - - - - - 0.931 - - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
83. POPDC3 ENSGALG00000027420 700 0.931 - - - - - - 0.931 - - - popeye domain containing 3 [Source:NCBI gene;Acc:395434]
84. CCND1 ENSGALG00000007555 6715 0.931 - - - - - - 0.931 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
85. NPHP3 ENSGALG00000034586 1465 0.93 - - - - - - 0.930 - - - nephrocystin 3, transcript variant X1
86. GCC2 ENSGALG00000016806 1085 0.93 - - - - - - 0.930 - - - GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
87. SDCCAG8 ENSGALG00000010713 311 0.928 - - - - - - 0.928 - - - serologically defined colon cancer antigen 8, transcript variant X5
88. UBAC1 ENSGALG00000042564 598 0.928 - - - - - - 0.928 - - - UBA domain containing 1 [Source:NCBI gene;Acc:427754]
89. KIF15 ENSGALG00000036645 9946 0.927 - - - - - - 0.927 - - - kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
90. SEMA4B ENSGALG00000008297 11202 0.923 - - - - - - 0.923 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
91. TRAM1 ENSGALG00000041112 22876 0.923 - - - - - - 0.923 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
92. UBA3 ENSGALG00000013410 6923 0.919 - - - - - - 0.919 - - - ubiquitin like modifier activating enzyme 3 [Source:HGNC Symbol;Acc:HGNC:12470]
93. HDGFL3 ENSGALG00000006036 13576 0.917 - - - - - - 0.917 - - - HDGF like 3 [Source:HGNC Symbol;Acc:HGNC:24937]
94. MED7 ENSGALG00000003870 4244 0.915 - - - - - - 0.915 - - - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]
95. MRPS11 ENSGALG00000006777 16009 0.914 - - - - - - 0.914 - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
96. POR ENSGALG00000002053 5223 0.913 - - - - - - 0.913 - - - cytochrome p450 oxidoreductase [Source:NCBI gene;Acc:417520]
97. CCDC58 ENSGALG00000014413 9022 0.913 - - - - - - 0.913 - - - coiled-coil domain containing 58 [Source:NCBI gene;Acc:418269]
98. GCLM ENSGALG00000005782 15789 0.913 - - - - - - 0.913 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
99. LARP1 ENSGALG00000040109 14808 0.913 - - - - - - 0.913 - - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
100. CHMP7 ENSGALG00000000409 8967 0.912 - - - - - - 0.912 - - - charged multivesicular body protein 7 [Source:NCBI gene;Acc:419535]

There are 205 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA