Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for XPA

Gene Name Gene ID Reads Annotation
XPA ENSGALG00000028998 8621 XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]











Genes with expression patterns similar to XPA

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. XPA ENSGALG00000028998 8621 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]
2. ARPC4 ENSGALG00000006691 33311 1.658 - - - - - - 0.943 0.715 - - actin related protein 2/3 complex subunit 4 [Source:NCBI gene;Acc:416051]
3. TBCCD1 ENSGALG00000006566 2696 1.652 - - - - - - 0.903 0.749 - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
4. ARHGAP29 ENSGALG00000005683 3622 1.649 - - - - - - 0.917 0.732 - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
5. POLR3E ENSGALG00000007008 4010 1.624 - - - - - - 0.917 0.707 - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
6. COPE ENSGALG00000003153 19444 1.572 - - - - - - 0.866 0.706 - - coatomer protein complex subunit epsilon [Source:NCBI gene;Acc:420117]
7. PEBP1 ENSGALG00000007403 77502 1.515 - - - - - - 0.763 - - 0.752 phosphatidylethanolamine binding protein 1 [Source:NCBI gene;Acc:416990]
8. PSMB3 ENSGALG00000001597 22588 1.482 - - - - - - 0.755 0.727 - - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]
9. RPA3 ENSGALG00000010700 6212 1.41 - - - - - - - 0.707 - 0.703 replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
10. PSMG3 ENSGALG00000004203 11240 0.967 - - - - - - 0.967 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
11. CCDC58 ENSGALG00000014413 9022 0.963 - - - - - - 0.963 - - - coiled-coil domain containing 58 [Source:NCBI gene;Acc:418269]
12. NCOA4 ENSGALG00000002066 10544 0.961 - - - - - - 0.961 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
13. ALDH4A1 ENSGALG00000042184 9432 0.961 - - - - - - 0.961 - - - aldehyde dehydrogenase 4 family member A1 [Source:NCBI gene;Acc:419467]
14. MFGE8 ENSGALG00000006702 6976 0.946 - - - - - - 0.946 - - - milk fat globule-EGF factor 8 protein [Source:NCBI gene;Acc:415494]
15. UTP3 ENSGALG00000011553 8814 0.945 - - - - - - 0.945 - - - UTP3, small subunit processome component homolog (S. cerevisiae)
16. FGD3 ENSGALG00000005237 4410 0.945 - - - - - - 0.945 - - - FYVE, RhoGEF and PH domain containing 3 [Source:HGNC Symbol;Acc:HGNC:16027]
17. NAA25 ENSGALG00000041821 12729 0.936 - - - - - - 0.936 - - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit [Source:NCBI gene;Acc:416883]
18. PPP3R1 ENSGALG00000023648 3417 0.936 - - - - - - 0.936 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
19. ARL6IP5 ENSGALG00000038904 12956 0.932 - - - - - - 0.932 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
20. GCLM ENSGALG00000005782 15789 0.93 - - - - - - 0.930 - - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
21. TRAM1 ENSGALG00000041112 22876 0.929 - - - - - - 0.929 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
22. SNRPF ENSGALG00000011409 23557 0.928 - - - - - - 0.928 - - - small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]
23. YBX1 ENSGALG00000004848 20992 0.926 - - - - - - 0.926 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
24. EI24 ENSGALG00000038097 24081 0.926 - - - - - - 0.926 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
25. DNAJC15 ENSGALG00000016965 9163 0.924 - - - - - - 0.924 - - - DnaJ heat shock protein family (Hsp40) member C15 [Source:NCBI gene;Acc:418838]
26. PTDSS1 ENSGALG00000030185 5515 0.924 - - - - - - 0.924 - - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
27. METTL11A METTL11A 11876 0.923 - - - - - - 0.923 - - -
28. LATS2 4776 0.921 - - - - - - 0.921 - - - large tumor suppressor kinase 2
29. RBM12B ENSGALG00000035129 4314 0.921 - - - - - - 0.921 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
30. ABCD3 ENSGALG00000005647 4844 0.92 - - - - - - 0.920 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
31. H2AFY_1 ENSGALG00000040141 4895 0.92 - - - - - - 0.920 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
32. OGFOD1 6926 0.918 - - - - - - 0.918 - - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
33. AP2B1 ENSGALG00000042125 13229 0.918 - - - - - - 0.918 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
34. RILPL2 ENSGALG00000003321 5632 0.918 - - - - - - 0.918 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
35. MYST2 MYST2 8078 0.918 - - - - - - 0.918 - - -
36. E2F6 ENSGALG00000016454 4747 0.918 - - - - - - 0.918 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
37. CLCN3 ENSGALG00000009674 3704 0.917 - - - - - - 0.917 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
38. PNO1 ENSGALG00000009093 11153 0.917 - - - - - - 0.917 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
39. RBBP6 ENSGALG00000006043 9708 0.916 - - - - - - 0.916 - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
40. SHQ1 ENSGALG00000007798 1982 0.916 - - - - - - 0.916 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
41. RAB20 ENSGALG00000016844 3250 0.916 - - - - - - 0.916 - - - RAB20, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18260]
42. THOC2 ENSGALG00000008507 9501 0.915 - - - - - - 0.915 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
43. ENSGALG00000027854 ENSGALG00000027854 5007 0.915 - - - - - - 0.915 - - -
44. KCTD9 ENSGALG00000000275 3455 0.914 - - - - - - 0.914 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
45. BFAR ENSGALG00000003111 1778 0.914 - - - - - - 0.914 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
46. MAP1LC3A ENSGALG00000038721 2230 0.914 - - - - - - 0.914 - - - microtubule associated protein 1 light chain 3 alpha
47. LACTB2 ENSGALG00000038745 3460 0.914 - - - - - - 0.914 - - - lactamase beta 2 [Source:NCBI gene;Acc:420178]
48. NARS ENSGALG00000040506 9506 0.914 - - - - - - 0.914 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
49. ADH5 ENSGALG00000012245 38217 0.913 - - - - - - 0.913 - - - alcohol dehydrogenase 5 (class III), chi polypeptide [Source:NCBI gene;Acc:422705]
50. RPA1 ENSGALG00000003072 8023 0.913 - - - - - - 0.913 - - - replication protein A1 [Source:NCBI gene;Acc:417563]
51. KIF20A ENSGALG00000035030 10249 0.913 - - - - - - 0.913 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
52. EIF4G3 ENSGALG00000010084 5881 0.913 - - - - - - 0.913 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
53. TM9SF3 ENSGALG00000005534 15290 0.913 - - - - - - 0.913 - - - transmembrane 9 superfamily member 3
54. DNAJA3 ENSGALG00000007821 3963 0.912 - - - - - - 0.912 - - - DnaJ heat shock protein family (Hsp40) member A3 [Source:HGNC Symbol;Acc:HGNC:11808]
55. IRAK2 ENSGALG00000008407 5934 0.912 - - - - - - 0.912 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
56. BPTF ENSGALG00000038222 7521 0.912 - - - - - - 0.912 - - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
57. DNA2 ENSGALG00000004037 5426 0.912 - - - - - - 0.912 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
58. MED6 ENSGALG00000029743 9414 0.912 - - - - - - 0.912 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
59. INTS10 ENSGALG00000010130 6320 0.912 - - - - - - 0.912 - - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
60. LMNB2 ENSGALG00000000470 4364 0.91 - - - - - - 0.910 - - - lamin B2 [Source:NCBI gene;Acc:396222]
61. NDUFA9 ENSGALG00000017282 14358 0.91 - - - - - - 0.910 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
62. ARID4A ENSGALG00000012037 8554 0.91 - - - - - - 0.910 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
63. gga-mir-6643 ENSGALG00000027935 4442 0.91 - - - - - - 0.910 - - - gga-mir-6643 [Source:miRBase;Acc:MI0022462]
64. SDF4 ENSGALG00000001872 6382 0.91 - - - - - - 0.910 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
65. AK6 ENSGALG00000020534 4791 0.909 - - - - - - 0.909 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
66. SCRN1 ENSGALG00000011176 3783 0.909 - - - - - - 0.909 - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
67. MOB2 ENSGALG00000030499 3658 0.909 - - - - - - 0.909 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
68. ATE1 ENSGALG00000009502 3751 0.909 - - - - - - 0.909 - - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
69. HACE1 ENSGALG00000015415 1194 0.909 - - - - - - 0.909 - - - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421788]
70. RRN3 ENSGALG00000041989 3934 0.908 - - - - - - 0.908 - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
71. ATN1 ENSGALG00000014554 3270 0.908 - - - - - - 0.908 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
72. AKAP7 ENSGALG00000029794 3287 0.908 - - - - - - 0.908 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
73. CAMKK2 ENSGALG00000040131 2795 0.907 - - - - - - 0.907 - - - calcium/calmodulin dependent protein kinase kinase 2, transcript variant X9
74. SEMA4B ENSGALG00000008297 11202 0.907 - - - - - - 0.907 - - - semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
75. ATRX ENSGALG00000007843 34172 0.906 - - - - - - 0.906 - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
76. CLPTM1L ENSGALG00000013187 9733 0.906 - - - - - - 0.906 - - - CLPTM1 like [Source:NCBI gene;Acc:420973]
77. LEPROTL1 ENSGALG00000024482 4251 0.906 - - - - - - 0.906 - - - leptin receptor overlapping transcript-like 1
78. CCND1 ENSGALG00000007555 6715 0.905 - - - - - - 0.905 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
79. CETN2 ENSGALG00000007510 1688 0.905 - - - - - - 0.905 - - - centrin 2 [Source:NCBI gene;Acc:422303]
80. DISP1 3281 0.905 - - - - - - 0.905 - - - dispatched RND transporter family member 1, transcript variant X3
81. XRN1 ENSGALG00000002706 4014 0.905 - - - - - - 0.905 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
82. SLC1A1 ENSGALG00000010187 637 0.905 - - - - - - 0.905 - - - solute carrier family 1 member 1 [Source:HGNC Symbol;Acc:HGNC:10939]
83. NDUFB8 ENSGALG00000005704 5781 0.904 - - - - - - 0.904 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
84. SIRT1 ENSGALG00000002761 9028 0.904 - - - - - - 0.904 - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
85. GCC2 ENSGALG00000016806 1085 0.903 - - - - - - 0.903 - - - GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
86. ZIC1 ENSGALG00000040532 6543 0.903 - - - - - - 0.903 - - - Zic family member 1 [Source:NCBI gene;Acc:374103]
87. SREBF2 ENSGALG00000041687 4519 0.902 - - - - - - 0.902 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]
88. TMEM108 ENSGALG00000036412 2903 0.902 - - - - - - 0.902 - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
89. ARNT2 ENSGALG00000006445 7050 0.901 - - - - - - 0.901 - - - aryl hydrocarbon receptor nuclear translocator 2 [Source:HGNC Symbol;Acc:HGNC:16876]
90. MSRA ENSGALG00000028032 2607 0.9 - - - - - - 0.900 - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
91. UBAC1 ENSGALG00000042564 598 0.9 - - - - - - 0.900 - - - UBA domain containing 1 [Source:NCBI gene;Acc:427754]
92. ENSGALG00000002923 ENSGALG00000002923 2233 0.9 - - - - - - 0.900 - - -
93. MTFMT ENSGALG00000007353 805 0.899 - - - - - - 0.899 - - - mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:HGNC:29666]
94. KLHL29 ENSGALG00000016495 582 0.898 - - - - - - 0.898 - - - kelch like family member 29 [Source:HGNC Symbol;Acc:HGNC:29404]
95. NPHP3 ENSGALG00000034586 1465 0.898 - - - - - - 0.898 - - - nephrocystin 3, transcript variant X1
96. MRE11A MRE11A 5754 0.897 - - - - - - 0.897 - - -
97. BCAS1 ENSGALG00000007796 379 0.897 - - - - - - 0.897 - - - breast carcinoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:974]
98. SOD2 ENSGALG00000011661 13178 0.897 - - - - - - 0.897 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
99. POPDC3 ENSGALG00000027420 700 0.896 - - - - - - 0.896 - - - popeye domain containing 3 [Source:NCBI gene;Acc:395434]
100. FASTKD2 ENSGALG00000008529 7439 0.895 - - - - - - 0.895 - - - FAST kinase domains 2 [Source:HGNC Symbol;Acc:HGNC:29160]

There are 262 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA