Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VSX2

Gene Name Gene ID Reads Annotation
VSX2 ENSGALG00000033517 30 visual system homeobox 2 [Source:NCBI gene;Acc:395536]











Genes with expression patterns similar to VSX2

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VSX2 ENSGALG00000033517 30 5 - - 1.000 1.000 1.000 - 1.000 - - 1.000 visual system homeobox 2 [Source:NCBI gene;Acc:395536]
2. BDH1B ENSGALG00000006976 9 1.599 - - 0.836 - 0.763 - - - - - 3-hydroxybutyrate dehydrogenase, type 1 B, transcript variant X1
3. SERPING1 ENSGALG00000007381 144 1.515 - - - - - - 0.760 - - 0.755 serpin family G member 1 [Source:HGNC Symbol;Acc:HGNC:1228]
4. ENSGALG00000001138 ENSGALG00000001138 21 1 - - - - - - 1.000 - - -
5. FAM240B ENSGALG00000021163 6 1 - - - - - - 1.000 - - - family with sequence similarity 240 member B [Source:NCBI gene;Acc:427470]
6. gga-mir-6558 ENSGALG00000032123 13 1 - - - - - - 1.000 - - - gga-mir-6558 [Source:miRBase;Acc:MI0022376]
7. SYPL1 ENSGALG00000029006 126 1 - - - - - - 1.000 - - - synaptophysin like 1 [Source:NCBI gene;Acc:417708]
8. CFAP74 ENSGALG00000001288 54 1 - - - - - - 1.000 - - - cilia and flagella associated protein 74 [Source:HGNC Symbol;Acc:HGNC:29368]
9. MSL2 ENSGALG00000039294 55 1 - - - - - - 1.000 - - - MSL complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:25544]
10. CCDC148 ENSGALG00000012555 22 1 - - - - - - 1.000 - - - coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
11. CUBN ENSGALG00000008704 21 1 - - - - - - 1.000 - - - cubilin [Source:HGNC Symbol;Acc:HGNC:2548]
12. SELP 28 1 - - - - - - 1.000 - - - selectin P, transcript variant X9
13. VEPH1 ENSGALG00000009682 51 1 - - - - - - 1.000 - - - ventricular zone expressed PH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25735]
14. ENSGALG00000019221 ENSGALG00000019221 9 1 - - - - - - 1.000 - - -
15. SMTNL1 12 1 - - - - - - 1.000 - - - smoothelin like 1
16. PLCL1 ENSGALG00000008113 23 1 - - - - - - 1.000 - - - phospholipase C like 1 (inactive) [Source:HGNC Symbol;Acc:HGNC:9063]
17. MATN3 ENSGALG00000016478 10 1 - - - - - - 1.000 - - - matrilin 3 [Source:NCBI gene;Acc:395954]
18. MCMBP ENSGALG00000009455 90 1 - - - - - - 1.000 - - - minichromosome maintenance complex binding protein [Source:NCBI gene;Acc:423933]
19. PIK3CG ENSGALG00000008081 5 1 - - - - - - 1.000 - - - phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma [Source:NCBI gene;Acc:417706]
20. TMCC1 ENSGALG00000008487 65 1 - - - - - - 1.000 - - - transmembrane and coiled-coil domain family 1 [Source:HGNC Symbol;Acc:HGNC:29116]
21. PACSIN1 ENSGALG00000002802 6 1 - - - - - - 1.000 - - - protein kinase C and casein kinase substrate in neurons 1 [Source:HGNC Symbol;Acc:HGNC:8570]
22. CTNNAL1 ENSGALG00000013207 44 1 - - - - - - 1.000 - - - catenin alpha like 1 [Source:HGNC Symbol;Acc:HGNC:2512]
23. TAT ENSGALG00000000893 11 1 - - - - - - 1.000 - - - tyrosine aminotransferase [Source:HGNC Symbol;Acc:HGNC:11573]
24. ENSGALG00000001478 ENSGALG00000001478 23 1 - - - - - - 1.000 - - -
25. BRPF3 8 1 - - - - - - 1.000 - - - bromodomain and PHD finger containing, 3, transcript variant X2
26. CACNG3 ENSGALG00000038087 12 1 - - - - - - 1.000 - - - calcium voltage-gated channel auxiliary subunit gamma 3 [Source:NCBI gene;Acc:395378]
27. CYP17A1 ENSGALG00000008121 227 1 - - - - - - 1.000 - - - cytochrome P450 family 17 subfamily A member 1 [Source:NCBI gene;Acc:425056]
28. RGR ENSGALG00000002299 17 1 - - - - - - 1.000 - - - retinal G protein coupled receptor [Source:NCBI gene;Acc:423619]
29. ENSGALG00000019156 ENSGALG00000019156 1 1 - - - - - - 1.000 - - -
30. TM6SF2 ENSGALG00000029015 109 1 - - - - - - 1.000 - - - transmembrane 6 superfamily member 2 [Source:HGNC Symbol;Acc:HGNC:11861]
31. ZDHHC18 ENSGALG00000034910 16 1 - - - - - - 1.000 - - - zinc finger, DHHC-type containing 18 [Source:NCBI gene;Acc:419575]
32. ENSGALG00000000346 ENSGALG00000000346 130 1 - - - - - - 1.000 - - -
33. SBSPONL ENSGALG00000005862 129 1 - - - - - - 1.000 - - - somatomedin B and thrombospondin type 1 domain containing like [Source:NCBI gene;Acc:416923]
34. PCID2 ENSGALG00000016831 57 1 - - - - - - 1.000 - - - PCI domain containing 2 [Source:NCBI gene;Acc:418745]
35. C21orf62 ENSGALG00000040059 5 1 - - - - - - 1.000 - - - chromosome 21 open reading frame 62 [Source:HGNC Symbol;Acc:HGNC:1305]
36. TGIF2 ENSGALG00000024081 21 1 - - - - - - 1.000 - - - TGFB induced factor homeobox 2 [Source:HGNC Symbol;Acc:HGNC:15764]
37. CYP2W1 ENSGALG00000021238, ENSGALG00000045037 2 1 - - - - - - 1.000 - - - cytochrome P450 family 2 subfamily W member 1, transcript variant X4
38. CTNND1 ENSGALG00000007330 53 1 - - - - - - 1.000 - - - catenin delta 1 [Source:HGNC Symbol;Acc:HGNC:2515]
39. MPPED2 ENSGALG00000012136 7 1 - - - - - - 1.000 - - - metallophosphoesterase domain containing 2 [Source:NCBI gene;Acc:421604]
40. VSNL1 ENSGALG00000016464 19 1 - - - - - - 1.000 - - - visinin like 1 [Source:NCBI gene;Acc:396189]
41. DMP1 ENSGALG00000010927 5 1 - - - - - - 1.000 - - - matrix extracellular phosphoglycoprotein [Source:NCBI gene;Acc:395256]
42. SRD5A2 ENSGALG00000010625 23 1 - - - - - - 1.000 - - - steroid 5 alpha-reductase 2 [Source:HGNC Symbol;Acc:HGNC:11285]
43. CEP85 ENSGALG00000042624 59 1 - - - - - - 1.000 - - - centrosomal protein 85 [Source:HGNC Symbol;Acc:HGNC:25309]
44. CD72 ENSGALG00000005194 1 1 - - - - - - 1.000 - - - CD72 molecule [Source:NCBI gene;Acc:395923]
45. ENSGALG00000028038 ENSGALG00000028038 9 1 - - - - - - 1.000 - - -
46. CLDN1 ENSGALG00000026862 28 1 - - - - - - 1.000 - - - claudin 1 [Source:NCBI gene;Acc:424910]
47. ENSGALG00000012780 ENSGALG00000012780 10 0.956 - - - - - - - - - 0.956
48. ENSGALG00000000407 ENSGALG00000000407 32 0.956 - - - - - - - - - 0.956
49. DOCK3 ENSGALG00000002335 5 0.956 - - - - - - - - - 0.956 dedicator of cytokinesis 3 [Source:HGNC Symbol;Acc:HGNC:2989]
50. ATP10B ENSGALG00000001662 15 0.956 - - - - - - - - - 0.956 ATPase phospholipid transporting 10B (putative) [Source:HGNC Symbol;Acc:HGNC:13543]
51. GBX2 ENSGALG00000013342 5 0.956 - - - - - - - - - 0.956 gastrulation brain homeobox 2 [Source:NCBI gene;Acc:395950]
52. TIMP3_1 ENSGALG00000028627 24 0.956 - - - - - - - - - 0.956 TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
53. ENSGALG00000028778 ENSGALG00000028778 47 0.956 - - - - - - - - - 0.956
54. EVI2A ENSGALG00000039084 13 0.956 - - - - - - - - - 0.956 ecotropic viral integration site 2A [Source:NCBI gene;Acc:776037]
55. RAD21L1 ENSGALG00000006186 2 0.956 - - - - - - - - - 0.956 RAD21 cohesin complex component like 1 [Source:HGNC Symbol;Acc:HGNC:16271]
56. MGAT5B ENSGALG00000001740 2 0.956 - - - - - - - - - 0.956 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [Source:HGNC Symbol;Acc:HGNC:24140]
57. PCGF5 ENSGALG00000006502 2 0.956 - - - - - - - - - 0.956 polycomb group ring finger 5 [Source:NCBI gene;Acc:423796]
58. ENSGALG00000028479 ENSGALG00000028479 5 0.956 - - - - - - - - - 0.956
59. DCAKD ENSGALG00000000870 4 0.956 - - - - - - - - - 0.956 dephospho-CoA kinase domain containing [Source:HGNC Symbol;Acc:HGNC:26238]
60. ABCC5 ENSGALG00000008369 1 0.956 - - - - - - - - - 0.956 ATP binding cassette subfamily C member 5 [Source:HGNC Symbol;Acc:HGNC:56]
61. FAM198A ENSGALG00000037533 7 0.956 - - - - - - - - - 0.956 family with sequence similarity 198 member A [Source:HGNC Symbol;Acc:HGNC:24485]
62. GRIN1 ENSGALG00000008898 18 0.956 - - - - - - - - - 0.956 glutamate ionotropic receptor NMDA type subunit 1 [Source:NCBI gene;Acc:404296]
63. CSGALNACT1 ENSGALG00000010125 5 0.956 - - - - - - - - - 0.956 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24290]
64. ADRA2C ENSGALG00000015608 42 0.956 - - - - - - - - - 0.956 adrenoceptor alpha 2C [Source:HGNC Symbol;Acc:HGNC:283]
65. FOXN4 ENSGALG00000005062 7 0.956 - - - - - - - - - 0.956 forkhead box N4 [Source:NCBI gene;Acc:416898]
66. SLC1A7 ENSGALG00000010673 1 0.956 - - - - - - - - - 0.956 solute carrier family 1 member 7 [Source:HGNC Symbol;Acc:HGNC:10945]
67. RNF217 ENSGALG00000013651 1 0.956 - - - - - - - - - 0.956 ring finger protein 217 [Source:HGNC Symbol;Acc:HGNC:21487]
68. C19orf44 C19orf44 24 0.956 - - - - - - - - - 0.956
69. SCNN1B ENSGALG00000006202 87 0.931 - - - - - - 0.931 - - - sodium channel epithelial 1 beta subunit [Source:HGNC Symbol;Acc:HGNC:10600]
70. SLC24A3 ENSGALG00000008445 8 0.918 - - - - - - - - - 0.918 solute carrier family 24 member 3 [Source:HGNC Symbol;Acc:HGNC:10977]
71. CARD8 ENSGALG00000007698 45 0.918 - - - - - - 0.918 - - - caspase recruitment domain family, member 8
72. FSHR ENSGALG00000009100 18 0.91 - - - - - - - - - 0.910 follicle stimulating hormone receptor [Source:NCBI gene;Acc:395962]
73. KIF5C ENSGALG00000012462 167 0.9 - - - - - - 0.900 - - - kinesin family member 5C [Source:NCBI gene;Acc:408046]
74. PXDNL ENSGALG00000036838 548 0.9 - - - - - - - - - 0.900 peroxidasin like, transcript variant X1
75. CXorf22 CXorf22 20 0.897 - - 0.897 - - - - - - -
76. ENSGALG00000026756 ENSGALG00000026756 134 0.894 - - - - - - - - - 0.894
77. LOC418544 ENSGALG00000019175 19 0.886 - - 0.886 - - - - - - - cystathionine beta-synthase-like
78. STARD8 ENSGALG00000032419 1 0.885 - - - - - - - - - 0.885 StAR related lipid transfer domain containing 8 [Source:HGNC Symbol;Acc:HGNC:19161]
79. MSN ENSGALG00000039615 383 0.883 - - - - - - 0.883 - - - moesin [Source:NCBI gene;Acc:422173]
80. STAB1 21 0.873 - - - - - - - - - 0.873 stabilin 1, transcript variant X2
81. Y Y 51 0.872 - - - - - - 0.872 - - -
82. TLR4 ENSGALG00000007001 116 0.868 - - - - - - 0.868 - - - toll like receptor 4 [Source:NCBI gene;Acc:417241]
83. H2B-V H2B-V 24 0.867 - - 0.867 - - - - - - -
84. ATP9B 33 0.866 - - - - - - - - - 0.866 ATPase phospholipid transporting 9B (putative), transcript variant X2
85. ADMP ENSGALG00000037408 24 0.864 - - 0.864 - - - - - - - anti-dorsalizing morphogenetic protein [Source:NCBI gene;Acc:395622]
86. ADCYAP1R1 ENSGALG00000005223 114 0.861 - - - - - - 0.861 - - - ADCYAP receptor type I [Source:NCBI gene;Acc:420386]
87. VSX1 ENSGALG00000037576 1517 0.854 - - - - - - - - - 0.854 visual system homeobox 1 [Source:NCBI gene;Acc:395537]
88. GZMM ENSGALG00000015192 8 0.852 - - 0.852 - - - - - - - granzyme M
89. ENSGALG00000012002 ENSGALG00000012002 4 0.852 - - 0.852 - - - - - - -
90. PDGFRB ENSGALG00000030613 4 0.852 - - 0.852 - - - - - - - platelet derived growth factor receptor beta [Source:HGNC Symbol;Acc:HGNC:8804]
91. DMB1 ENSGALG00000000162 7 0.852 - - 0.852 - - - - - - - major histocompatibility complex, class II, DM beta 1 [Source:NCBI gene;Acc:106182184]
92. PPP1R16B ENSGALG00000003568 25 0.851 - - - - - - 0.851 - - - protein phosphatase 1 regulatory subunit 16B [Source:NCBI gene;Acc:419170]
93. PDE6H ENSGALG00000025735 37 0.851 - - - - - - 0.851 - - - phosphodiesterase 6H [Source:NCBI gene;Acc:378929]
94. OGDHL ENSGALG00000002266 57 0.851 - - - - - - 0.851 - - - oxoglutarate dehydrogenase like [Source:NCBI gene;Acc:423618]
95. GPSM2 ENSGALG00000002090 50 0.848 - - - - 0.848 - - - - - G protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
96. SH3BP5 ENSGALG00000039337 17 0.848 - - 0.848 - - - - - - - SH3 domain binding protein 5 [Source:NCBI gene;Acc:420682]
97. UBE2L6 ENSGALG00000046098 393 0.838 - - - - - - 0.838 - - - ubiquitin-conjugating enzyme E2L 6, transcript variant X3
98. SCN4B ENSGALG00000007409 22 0.836 - - - - - - 0.836 - - - sodium voltage-gated channel beta subunit 4 [Source:HGNC Symbol;Acc:HGNC:10592]
99. CHRNA10 ENSGALG00000022702 7 0.833 - - - - - - - - - 0.833 cholinergic receptor, nicotinic, alpha 10 (neuronal) [Source:NCBI gene;Acc:430628]
100. RC3H2 ENSGALG00000001253 18 0.832 - - - - - - - - - 0.832 ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]

There are 107 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA