Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VSX1

Gene Name Gene ID Reads Annotation
VSX1 ENSGALG00000037576 1517 visual system homeobox 1 [Source:NCBI gene;Acc:395537]











Genes with expression patterns similar to VSX1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VSX1 ENSGALG00000037576 1517 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 visual system homeobox 1 [Source:NCBI gene;Acc:395537]
2. PRDM8 ENSGALG00000038372 928 1.459 - - 0.714 - - - - - - 0.745 PR/SET domain 8 [Source:HGNC Symbol;Acc:HGNC:13993]
3. LRPAP1 ENSGALG00000015612 3526 1 - - - - - - 1.000 - - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
4. EIF1B ENSGALG00000038646 9508 0.999 - - - - - - 0.999 - - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
5. USPL1 ENSGALG00000017079 6263 0.999 - - - - - - 0.999 - - - ubiquitin specific peptidase like 1 [Source:NCBI gene;Acc:395436]
6. FAT1 ENSGALG00000013579 6030 0.999 - - - - - - 0.999 - - - FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
7. FAM192A ENSGALG00000021473 10213 0.999 - - - - - - 0.999 - - - family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
8. RNF141 ENSGALG00000029586 4962 0.999 - - - - - - 0.999 - - - ring finger protein 141 [Source:NCBI gene;Acc:423039]
9. WDHD1 ENSGALG00000012199 3570 0.999 - - - - - - 0.999 - - - WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
10. CORO1C ENSGALG00000004901 7055 0.999 - - - - - - 0.999 - - - coronin 1C [Source:NCBI gene;Acc:416893]
11. Sep-06 Sep-06 5961 0.999 - - - - - - 0.999 - - -
12. C9orf64 ENSGALG00000012589 6097 0.999 - - - - - - 0.999 - - - chromosome 9 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28144]
13. ZEB1 ENSGALG00000007260 9277 0.998 - - - - - - 0.998 - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
14. MCM3 ENSGALG00000016676 16934 0.998 - - - - - - 0.998 - - - minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
15. GPC1 ENSGALG00000040316 13364 0.997 - - - - - - 0.997 - - - glypican 1 [Source:NCBI gene;Acc:424770]
16. C15H12ORF49 C15H12ORF49 13250 0.997 - - - - - - 0.997 - - -
17. ARHGAP32 ENSGALG00000043511 7916 0.997 - - - - - - 0.997 - - - Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
18. CCNYL1 ENSGALG00000008485 11958 0.996 - - - - - - 0.996 - - - cyclin Y like 1
19. EIF3D ENSGALG00000012529 40887 0.996 - - - - - - 0.996 - - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
20. HDAC8 ENSGALG00000004825 12066 0.996 - - - - - - 0.996 - - - histone deacetylase 8, transcript variant X2
21. MCM6 ENSGALG00000012348 12523 0.996 - - - - - - 0.996 - - - minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
22. DAPK3 ENSGALG00000037733 6215 0.996 - - - - - - 0.996 - - - death-associated protein kinase 3, transcript variant X2
23. EFTUD2 ENSGALG00000000988 17913 0.996 - - - - - - 0.996 - - - elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
24. MATR3 ENSGALG00000002478 12793 0.995 - - - - - - 0.995 - - - matrin 3 [Source:NCBI gene;Acc:373948]
25. RAB12 ENSGALG00000033608 14160 0.995 - - - - - - 0.995 - - - RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
26. CTBPL ENSGALG00000007642 14238 0.994 - - - - - - 0.994 - - - C-terminal binding protein-like [Source:NCBI gene;Acc:416354]
27. CXCL12 ENSGALG00000041346 4128 0.994 - - - - - - 0.994 - - - C-X-C motif chemokine ligand 12 [Source:NCBI gene;Acc:395180]
28. CNOT6 ENSGALG00000034316 10496 0.994 - - - - - - 0.994 - - - CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
29. INTS4 ENSGALG00000000091 5965 0.993 - - - - - - 0.993 - - - integrator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:25048]
30. DNAJC7 ENSGALG00000042796 14597 0.993 - - - - - - 0.993 - - - DnaJ heat shock protein family (Hsp40) member C7 [Source:NCBI gene;Acc:428312]
31. TMEM18 ENSGALG00000028744 11779 0.991 - - - - - - 0.991 - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
32. SLC9A3R1 ENSGALG00000007650 13053 0.989 - - - - - - 0.989 - - - SLC9A3 regulator 1 [Source:NCBI gene;Acc:422108]
33. PDLIM4 ENSGALG00000039872 7823 0.986 - - - - - - 0.986 - - - PDZ and LIM domain 4 [Source:NCBI gene;Acc:395643]
34. IFT20 ENSGALG00000005707 23973 0.985 - - - - - - 0.985 - - - intraflagellar transport 20 [Source:HGNC Symbol;Acc:HGNC:30989]
35. UBE2L3 ENSGALG00000036739 21401 0.984 - - - - - - 0.984 - - - ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
36. DHFR ENSGALG00000026757 18478 0.983 - - - - - - 0.983 - - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
37. RAP1B ENSGALG00000009927 26562 0.983 - - - - - - 0.983 - - - RAP1B, member of RAS oncogene family [Source:NCBI gene;Acc:417840]
38. PPIG ENSGALG00000009839 24114 0.982 - - - - - - 0.982 - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
39. HNRNPH3 ENSGALG00000003947 28724 0.98 - - - - - - 0.980 - - - heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
40. CDCA4 ENSGALG00000011692 10381 0.98 - - - - - - 0.980 - - - cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
41. LRPPRC ENSGALG00000009967 17091 0.979 - - - - - - 0.979 - - - leucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
42. ZNF644 ENSGALG00000034253 28348 0.979 - - - - - - 0.979 - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
43. SMARCE1 ENSGALG00000003882 49063 0.964 - - - - - - 0.964 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:420047]
44. HNRNPM ENSGALG00000000377 40684 0.942 - - - - - - 0.942 - - - heterogeneous nuclear ribonucleoprotein M [Source:NCBI gene;Acc:420054]
45. FSHR ENSGALG00000009100 18 0.911 - - - - - - - - - 0.911 follicle stimulating hormone receptor [Source:NCBI gene;Acc:395962]
46. CHRNA10 ENSGALG00000022702 7 0.881 - - - - - - - - - 0.881 cholinergic receptor, nicotinic, alpha 10 (neuronal) [Source:NCBI gene;Acc:430628]
47. VSX2 ENSGALG00000033517 30 0.854 - - - - - - - - - 0.854 visual system homeobox 2 [Source:NCBI gene;Acc:395536]
48. ENSGALG00000009209 ENSGALG00000009209 6 0.824 - - - - - - - - - 0.824
49. gga-mir-6703 ENSGALG00000029026 124 0.824 - - - - - - - - - 0.824 gga-mir-6703 [Source:miRBase;Acc:MI0022525]
50. PXDNL ENSGALG00000036838 548 0.813 - - - - - - - - - 0.813 peroxidasin like, transcript variant X1
51. RNF217 ENSGALG00000013651 1 0.808 - - - - - - - - - 0.808 ring finger protein 217 [Source:HGNC Symbol;Acc:HGNC:21487]
52. C19orf44 C19orf44 24 0.808 - - - - - - - - - 0.808
53. ADRA2C ENSGALG00000015608 42 0.808 - - - - - - - - - 0.808 adrenoceptor alpha 2C [Source:HGNC Symbol;Acc:HGNC:283]
54. FOXN4 ENSGALG00000005062 7 0.808 - - - - - - - - - 0.808 forkhead box N4 [Source:NCBI gene;Acc:416898]
55. SLC1A7 ENSGALG00000010673 1 0.808 - - - - - - - - - 0.808 solute carrier family 1 member 7 [Source:HGNC Symbol;Acc:HGNC:10945]
56. CSGALNACT1 ENSGALG00000010125 5 0.808 - - - - - - - - - 0.808 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24290]
57. GRIN1 ENSGALG00000008898 18 0.808 - - - - - - - - - 0.808 glutamate ionotropic receptor NMDA type subunit 1 [Source:NCBI gene;Acc:404296]
58. ABCC5 ENSGALG00000008369 1 0.808 - - - - - - - - - 0.808 ATP binding cassette subfamily C member 5 [Source:HGNC Symbol;Acc:HGNC:56]
59. FAM198A ENSGALG00000037533 7 0.808 - - - - - - - - - 0.808 family with sequence similarity 198 member A [Source:HGNC Symbol;Acc:HGNC:24485]
60. MGAT5B ENSGALG00000001740 2 0.808 - - - - - - - - - 0.808 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B [Source:HGNC Symbol;Acc:HGNC:24140]
61. RAD21L1 ENSGALG00000006186 2 0.808 - - - - - - - - - 0.808 RAD21 cohesin complex component like 1 [Source:HGNC Symbol;Acc:HGNC:16271]
62. PCGF5 ENSGALG00000006502 2 0.808 - - - - - - - - - 0.808 polycomb group ring finger 5 [Source:NCBI gene;Acc:423796]
63. ENSGALG00000028479 ENSGALG00000028479 5 0.808 - - - - - - - - - 0.808
64. DCAKD ENSGALG00000000870 4 0.808 - - - - - - - - - 0.808 dephospho-CoA kinase domain containing [Source:HGNC Symbol;Acc:HGNC:26238]
65. EVI2A ENSGALG00000039084 13 0.808 - - - - - - - - - 0.808 ecotropic viral integration site 2A [Source:NCBI gene;Acc:776037]
66. ATP10B ENSGALG00000001662 15 0.808 - - - - - - - - - 0.808 ATPase phospholipid transporting 10B (putative) [Source:HGNC Symbol;Acc:HGNC:13543]
67. DOCK3 ENSGALG00000002335 5 0.808 - - - - - - - - - 0.808 dedicator of cytokinesis 3 [Source:HGNC Symbol;Acc:HGNC:2989]
68. GBX2 ENSGALG00000013342 5 0.808 - - - - - - - - - 0.808 gastrulation brain homeobox 2 [Source:NCBI gene;Acc:395950]
69. TIMP3_1 ENSGALG00000028627 24 0.808 - - - - - - - - - 0.808 TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
70. ENSGALG00000028778 ENSGALG00000028778 47 0.808 - - - - - - - - - 0.808
71. ENSGALG00000012780 ENSGALG00000012780 10 0.808 - - - - - - - - - 0.808
72. ENSGALG00000000407 ENSGALG00000000407 32 0.808 - - - - - - - - - 0.808
73. LUM ENSGALG00000011271 44020 0.802 - - - - - - 0.802 - - - lumican [Source:NCBI gene;Acc:417891]
74. RAB8B ENSGALG00000003487 295 0.801 - - - - - - - 0.801 - - RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30273]
75. EN1 ENSGALG00000042389 3051 0.79 - - - - - 0.790 - - - - engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
76. SUB1 ENSGALG00000003248 56412 0.785 - - - - - - 0.785 - - - SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
77. ST3GAL5 ENSGALG00000033260 19 0.779 - - - - - - - - - 0.779 ST3 beta-galactoside alpha-2,3-sialyltransferase 5 [Source:NCBI gene;Acc:407775]
78. SLC24A3 ENSGALG00000008445 8 0.776 - - - - - - - - - 0.776 solute carrier family 24 member 3 [Source:HGNC Symbol;Acc:HGNC:10977]
79. STARD8 ENSGALG00000032419 1 0.772 - - - - - - - - - 0.772 StAR related lipid transfer domain containing 8 [Source:HGNC Symbol;Acc:HGNC:19161]
80. RPL3 ENSGALG00000012172 118287 0.759 - - - - - - 0.759 - - - ribosomal protein L3 [Source:NCBI gene;Acc:418016]
81. SHISA3 ENSGALG00000026042 1108 0.759 - - - - - - - - - 0.759 shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]
82. TNNC2 ENSGALG00000006835 2963 0.759 - - - - - 0.759 - - - - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
83. NUDT7 ENSGALG00000034395 7396 0.756 - - - - - - 0.756 - - - nudix hydrolase 7 [Source:NCBI gene;Acc:415800]
84. SDC4 ENSGALG00000003932 3 0.748 - - - - - 0.748 - - - - syndecan 4 [Source:NCBI gene;Acc:419184]
85. STAB1 21 0.748 - - - - - - - - - 0.748 stabilin 1, transcript variant X2
86. SNCB ENSGALG00000021542 19 0.747 - - - - - - - - - 0.747 synuclein beta [Source:NCBI gene;Acc:395391]
87. ENSGALG00000026756 ENSGALG00000026756 134 0.742 - - - - - - - - - 0.742
88. ZBTB7C ENSGALG00000033408 711 0.742 - - - - - - - 0.742 - - zinc finger and BTB domain containing 7C [Source:HGNC Symbol;Acc:HGNC:31700]
89. C10orf71 ENSGALG00000027353 19 0.731 - - - - - 0.731 - - - - chromosome 10 open reading frame 71 [Source:HGNC Symbol;Acc:HGNC:26973]
90. GRIP1 ENSGALG00000009895 24 0.73 - - - - - 0.730 - - - - glutamate receptor interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:18708]
91. ST18 ENSGALG00000015254 117 0.729 - - - 0.729 - - - - - - ST18, C2H2C-type zinc finger [Source:HGNC Symbol;Acc:HGNC:18695]
92. ENSGALG00000004630 ENSGALG00000004630 1 0.725 - - - - - - - - - 0.725
93. RC3H2 ENSGALG00000001253 18 0.725 - - - - - - - - - 0.725 ring finger and CCCH-type domains 2 [Source:HGNC Symbol;Acc:HGNC:21461]
94. VTI1B ENSGALG00000009526 133 0.721 - - - 0.721 - - - - - - vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:HGNC:17793]
95. NRIP3 ENSGALG00000005903 58 0.72 - - - 0.720 - - - - - - nuclear receptor interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:1167]
96. HK3 ENSGALG00000027287 20 0.718 - - - - - - - - - 0.718 hexokinase 3, transcript variant X3
97. CACNA1G ENSGALG00000007623 1693 0.711 - - - - - - - 0.711 - - calcium voltage-gated channel subunit alpha1 G [Source:HGNC Symbol;Acc:HGNC:1394]
98. HPCAL4 ENSGALG00000003829 75 0.71 - - - - - 0.710 - - - - hippocalcin like 4 [Source:HGNC Symbol;Acc:HGNC:18212]
99. ICA1 ENSGALG00000010708 611 0.705 - - - - - 0.705 - - - - islet cell autoantigen 1 [Source:HGNC Symbol;Acc:HGNC:5343]
100. ENSGALG00000027002 ENSGALG00000027002 7570 0.702 - - - 0.702 - - - - - -

There are 3 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA