Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VRTN

Gene Name Gene ID Reads Annotation
VRTN ENSGALG00000010232 692 vertebrae development associated [Source:HGNC Symbol;Acc:HGNC:20223]











Genes with expression patterns similar to VRTN

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VRTN ENSGALG00000010232 692 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vertebrae development associated [Source:HGNC Symbol;Acc:HGNC:20223]
2. SRSF4 1200 1.675 - - 0.813 - 0.862 - - - - - serine and arginine rich splicing factor 4, transcript variant X2
3. RUFY2 1442 1.645 - - 0.916 - 0.729 - - - - - RUN and FYVE domain containing 2, transcript variant X1
4. NAT9 ENSGALG00000007723 2098 1.606 - - 0.782 - 0.824 - - - - - N-acetyltransferase 9 (putative), transcript variant X7
5. C26H6ORF89 C26H6ORF89 1826 1.601 - - - - 0.830 - 0.771 - - -
6. ENSGALG00000006865 ENSGALG00000006865 307 1.568 - - - - 0.846 - 0.722 - - -
7. TRPC6 ENSGALG00000029416 281 1.557 - - - - 0.798 - 0.759 - - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
8. ACBD6 ACBD6 4293 1.545 - - 0.812 - 0.733 - - - - -
9. SGOL1 SGOL1 3919 1.454 - - 0.735 - 0.719 - - - - -
10. BRCA1 ENSGALG00000002781 2052 1.444 - - - - 0.717 - 0.727 - - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
11. CFTR ENSGALG00000032986 424 1.439 - - - - 0.716 - 0.723 - - - cystic fibrosis transmembrane conductance regulator [Source:NCBI gene;Acc:100049619]
12. AKAP2 ENSGALG00000015656 4310 1.42 - - - - 0.716 - - - 0.704 - A kinase (PRKA) anchor protein 2 [Source:NCBI gene;Acc:100533110]
13. ENTPD5 ENSGALG00000010202 69 0.972 - - 0.972 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
14. LRP2 ENSGALG00000010858 363 0.971 - - 0.971 - - - - - - - LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
15. RHOC ENSGALG00000001569 53 0.969 - - 0.969 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
16. GRIK3 ENSGALG00000002098 111 0.968 - - 0.968 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
17. POMC ENSGALG00000016600 99 0.968 - - 0.968 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
18. SORCS1 ENSGALG00000008465 468 0.968 - - 0.968 - - - - - - - sortilin related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
19. C19H17ORF85 C19H17ORF85 2538 0.968 - - 0.968 - - - - - - -
20. MT1 MT1 218 0.968 - - 0.968 - - - - - - -
21. PLEKHG5 ENSGALG00000027476 42 0.967 - - 0.967 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
22. MGMT ENSGALG00000042949 53 0.967 - - 0.967 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
23. KIAA0195 KIAA0195 48 0.967 - - 0.967 - - - - - - -
24. ENSGALG00000023180 ENSGALG00000023180 83 0.967 - - 0.967 - - - - - - -
25. C8H1ORF52 C8H1ORF52 118 0.965 - - 0.965 - - - - - - -
26. ACOT9 ENSGALG00000016351 330 0.964 - - 0.964 - - - - - - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
27. ADAMTS2 ENSGALG00000032974 141 0.964 - - 0.964 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
28. GOLGA2 ENSGALG00000004881 677 0.961 - - 0.961 - - - - - - - golgin A2, transcript variant X7
29. LGALS3 ENSGALG00000012173 3306 0.957 - - 0.957 - - - - - - - galectin 3 [Source:NCBI gene;Acc:373917]
30. TMEM38B ENSGALG00000027472 2465 0.956 - - 0.956 - - - - - - - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]
31. ATP2B2 ENSGALG00000030908 584 0.955 - - 0.955 - - - - - - - ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
32. TRIM45 ENSGALG00000014818 1258 0.955 - - 0.955 - - - - - - - tripartite motif containing 45 [Source:HGNC Symbol;Acc:HGNC:19018]
33. Sep-02 Sep-02 206 0.954 - - 0.954 - - - - - - -
34. AP3M1 ENSGALG00000005070 712 0.953 - - 0.953 - - - - - - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
35. TSEN2 ENSGALG00000004981 1929 0.952 - - 0.952 - - - - - - - tRNA splicing endonuclease subunit 2 [Source:NCBI gene;Acc:415965]
36. CASP1 ENSGALG00000001049 1067 0.952 - - 0.952 - - - - - - - caspase 1, transcript variant X2
37. NCAPD3 ENSGALG00000001491 221 0.952 - - 0.952 - - - - - - - non-SMC condensin II complex subunit D3, transcript variant X3
38. RPUSD1 ENSGALG00000005315 651 0.951 - - 0.951 - - - - - - - RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
39. PKP4 ENSGALG00000012561 3087 0.951 - - 0.951 - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
40. MAK16 ENSGALG00000001663 7455 0.951 - - 0.951 - - - - - - - MAK16 homolog [Source:HGNC Symbol;Acc:HGNC:13703]
41. WDR89 ENSGALG00000011827 1481 0.95 - - 0.950 - - - - - - - WD repeat domain 89 [Source:NCBI gene;Acc:423510]
42. FBXO34 ENSGALG00000032563 656 0.95 - - 0.950 - - - - - - - F-box protein 34 [Source:NCBI gene;Acc:423554]
43. TRIM37 ENSGALG00000005084 4036 0.95 - - 0.950 - - - - - - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
44. IP6K1 ENSGALG00000002510 827 0.949 - - 0.949 - - - - - - - inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]
45. WDR11 ENSGALG00000035013 3393 0.948 - - 0.948 - - - - - - - WD repeat domain 11 [Source:HGNC Symbol;Acc:HGNC:13831]
46. ZNF423 ENSGALG00000003891 103 0.948 - - 0.948 - - - - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
47. TMEM97 ENSGALG00000005702 2037 0.947 - - 0.947 - - - - - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
48. SULT2B1L1 ENSGALG00000023472 569 0.946 - - 0.946 - - - - - - - sulfotransferase family cytosolic 2B member 1-like 1
49. LHFP 167 0.946 - - 0.946 - - - - - - - lipoma HMGIC fusion partner
50. LZIC ENSGALG00000002616 9052 0.946 - - 0.946 - - - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
51. EIF2AK2 ENSGALG00000010560 749 0.945 - - 0.945 - - - - - - - eukaryotic translation initiation factor 2 alpha kinase 2 [Source:NCBI gene;Acc:395147]
52. CXorf30 CXorf30 172 0.945 - - 0.945 - - - - - - -
53. GBGT1 ENSGALG00000003340 399 0.943 - - 0.943 - - - - - - - globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [Source:NCBI gene;Acc:417163]
54. MAN1A1 ENSGALG00000014878 1061 0.943 - - 0.943 - - - - - - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
55. LYPD6B ENSGALG00000028759 831 0.943 - - 0.943 - - - - - - - LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
56. MYO18A ENSGALG00000003741 1023 0.942 - - 0.942 - - - - - - - myosin XVIIIA [Source:HGNC Symbol;Acc:HGNC:31104]
57. FOPNL ENSGALG00000006532 2922 0.94 - - 0.940 - - - - - - - FGFR1OP N-terminal like [Source:NCBI gene;Acc:416598]
58. DDX18 ENSGALG00000012147 12463 0.94 - - 0.940 - - - - - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
59. SDCBP ENSGALG00000015436 1228 0.94 - - 0.940 - - - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
60. MPG ENSGALG00000028691 1874 0.939 - - 0.939 - - - - - - - N-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]
61. EYA3 ENSGALG00000000777 922 0.939 - - 0.939 - - - - - - - EYA transcriptional coactivator and phosphatase 3 [Source:NCBI gene;Acc:395717]
62. BCCIP ENSGALG00000006617 13291 0.939 - - 0.939 - - - - - - - BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]
63. GNMT ENSGALG00000043290 3288 0.937 - - 0.937 - - - - - - - glycine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4415]
64. ZEB2 ENSGALG00000040465 315 0.937 - - 0.937 - - - - - - - Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
65. CCDC25 ENSGALG00000016586 351 0.936 - - 0.936 - - - - - - - coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:HGNC:25591]
66. YLPM1 671 0.934 - - 0.934 - - - - - - - YLP motif containing 1
67. ZNF276 ENSGALG00000000513 2410 0.931 - - 0.931 - - - - - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
68. ATG10 ENSGALG00000027714 1100 0.93 - - 0.930 - - - - - - - autophagy related 10 [Source:HGNC Symbol;Acc:HGNC:20315]
69. DAPK3 ENSGALG00000037733 6215 0.93 - - 0.930 - - - - - - - death-associated protein kinase 3, transcript variant X2
70. INTS9 ENSGALG00000016631 742 0.929 - - 0.929 - - - - - - - integrator complex subunit 9 [Source:NCBI gene;Acc:422023]
71. BMP2 ENSGALG00000029301 379 0.929 - - 0.929 - - - - - - - bone morphogenetic protein 2 [Source:NCBI gene;Acc:378779]
72. USP40 ENSGALG00000004228 1137 0.928 - - 0.928 - - - - - - - ubiquitin specific peptidase 40 [Source:NCBI gene;Acc:100859211]
73. SLC4A4 ENSGALG00000031105 534 0.927 - - 0.927 - - - - - - - solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
74. EPB41 ENSGALG00000001329 787 0.926 - - 0.926 - - - - - - - erythrocyte membrane protein band 4.1 [Source:NCBI gene;Acc:396493]
75. LRR1 ENSGALG00000012230 1062 0.926 - - 0.926 - - - - - - - leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
76. PIH1D3 ENSGALG00000004870 1365 0.926 - - 0.926 - - - - - - - PIH1 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28570]
77. DPH3 3317 0.925 - - 0.925 - - - - - - - diphthamide biosynthesis 3
78. EXTL2 ENSGALG00000027984 808 0.925 - - 0.925 - - - - - - - exostosin like glycosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:3516]
79. OSGEPL1 ENSGALG00000037727 1879 0.923 - - 0.923 - - - - - - - O-sialoglycoprotein endopeptidase like 1 [Source:HGNC Symbol;Acc:HGNC:23075]
80. DLX5 ENSGALG00000009129 1395 0.921 - - 0.921 - - - - - - - distal-less homeobox 5 [Source:NCBI gene;Acc:373969]
81. RFNG ENSGALG00000002841 1643 0.921 - - 0.921 - - - - - - - RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395789]
82. TMEM128 ENSGALG00000014992 6567 0.92 - - 0.920 - - - - - - - transmembrane protein 128 [Source:NCBI gene;Acc:422845]
83. ISCU ENSGALG00000004869 6852 0.919 - - 0.919 - - - - - - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
84. FBF1 ENSGALG00000002179 1738 0.918 - - 0.918 - - - - - - - Fas binding factor 1 [Source:NCBI gene;Acc:770159]
85. ATP5F1 80590 0.917 - - 0.917 - - - - - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit B1
86. RAB3B ENSGALG00000010567 894 0.917 - - 0.917 - - - - - - - RAB3B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9778]
87. FRMD3 ENSGALG00000012577 999 0.916 - - 0.916 - - - - - - - FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
88. C5H14ORF166 C5H14ORF166 24176 0.916 - - 0.916 - - - - - - -
89. PFKFB3 ENSGALG00000040369 2119 0.915 - - 0.915 - - - - - - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 [Source:HGNC Symbol;Acc:HGNC:8874]
90. WBSCR17 581 0.914 - - 0.914 - - - - - - - Williams-Beuren syndrome chromosome region 17, transcript variant X1
91. KIAA0930 ENSGALG00000014226 1243 0.914 - - 0.914 - - - - - - - KIAA0930 [Source:HGNC Symbol;Acc:HGNC:1314]
92. ZOV3 ZOV3 3267 0.914 - - 0.914 - - - - - - -
93. LARS2 ENSGALG00000036309 2624 0.913 - - 0.913 - - - - - - - leucyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:17095]
94. PDCD4 ENSGALG00000008700 574 0.911 - - 0.911 - - - - - - - programmed cell death 4 [Source:NCBI gene;Acc:374191]
95. TSN ENSGALG00000011652 905 0.91 - - 0.910 - - - - - - - translin [Source:NCBI gene;Acc:395955]
96. TXNDC12 ENSGALG00000010569 13822 0.91 - - 0.910 - - - - - - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
97. TMEM200C ENSGALG00000030210 1434 0.91 - - 0.910 - - - - - - - transmembrane protein 200C [Source:HGNC Symbol;Acc:HGNC:37208]
98. GBAS 18453 0.91 - - 0.910 - - - - - - - glioblastoma amplified sequence
99. PCP4 ENSGALG00000022819 880 0.909 - - 0.909 - - - - - - - Purkinje cell protein 4 [Source:NCBI gene;Acc:771220]
100. STRN3 ENSGALG00000040464 9045 0.909 - - 0.909 - - - - - - - striatin 3 [Source:HGNC Symbol;Acc:HGNC:15720]

There are 581 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA