Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for VPS8

Gene Name Gene ID Reads Annotation
VPS8 ENSGALG00000006704 5419 VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]











Genes with expression patterns similar to VPS8

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VPS8 ENSGALG00000006704 5419 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
2. RAB21 ENSGALG00000010183 7718 1.813 - - - - 0.984 - 0.829 - - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
3. WHSC1L1 4065 1.781 - - - - 0.993 - 0.788 - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
4. SEC61A2 ENSGALG00000036300 4235 1.727 - - - - 0.991 - - 0.736 - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
5. HMGB3 ENSGALG00000009071 12011 1.689 - - - - 0.984 - - 0.705 - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
6. AZIN1 ENSGALG00000029295 11085 1.683 - - - - 0.879 - - 0.804 - - antizyme inhibitor 1 [Source:NCBI gene;Acc:420254]
7. RIT1 ENSGALG00000014647 7174 1.607 - - - - - - - 0.791 - 0.816 Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
8. GPR180 ENSGALG00000016897 1545 1.559 - - - - - - 0.809 - - 0.750 G protein-coupled receptor 180 [Source:HGNC Symbol;Acc:HGNC:28899]
9. SRSF1 ENSGALG00000005525 4376 1.547 - - - - - - 0.823 0.724 - - serine and arginine rich splicing factor 1 [Source:NCBI gene;Acc:772264]
10. ZFHX3 ENSGALG00000000713 2340 1.544 - - - - 0.833 - 0.711 - - - zinc finger homeobox 3 [Source:NCBI gene;Acc:395682]
11. ECHDC1 ENSGALG00000014828 958 1.477 - - - - - - 0.747 - - 0.730 ethylmalonyl-CoA decarboxylase 1 [Source:NCBI gene;Acc:769021]
12. RPA3 ENSGALG00000010700 6212 1.468 - - - - - - 0.714 0.754 - - replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
13. CEP76 ENSGALG00000013858 1809 1.451 - - - - - - 0.727 0.724 - - centrosomal protein 76
14. TNPO3 ENSGALG00000039420 5178 0.996 - - - - 0.996 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
15. C15H12ORF49 C15H12ORF49 13250 0.996 - - - - 0.996 - - - - -
16. HTRA3 ENSGALG00000034673 512 0.994 - - - - 0.994 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
17. RAE1 ENSGALG00000007653 8930 0.994 - - - - 0.994 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
18. MRPL22 ENSGALG00000003919 2760 0.993 - - - - 0.993 - - - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
19. gga-mir-6584 ENSGALG00000028834 1481 0.993 - - - - 0.993 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
20. RNF113A ENSGALG00000000538 3985 0.993 - - - - 0.993 - - - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
21. RILPL2 ENSGALG00000003321 5632 0.993 - - - - 0.993 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
22. NDST2 ENSGALG00000005107 4224 0.993 - - - - 0.993 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
23. MYEOV2 MYEOV2 5155 0.992 - - - - 0.992 - - - - -
24. IBA57 ENSGALG00000005328 4362 0.991 - - - - 0.991 - - - - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
25. PPAPDC1B PPAPDC1B 6698 0.991 - - - - 0.991 - - - - -
26. MAP1B ENSGALG00000014999 6288 0.99 - - - - 0.990 - - - - - microtubule associated protein 1B
27. MED1 ENSGALG00000001708 9556 0.99 - - - - 0.990 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
28. MRPL46 ENSGALG00000006782 5033 0.99 - - - - 0.990 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
29. SPG21 ENSGALG00000007262 8050 0.99 - - - - 0.990 - - - - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
30. PHKA1 ENSGALG00000004801 2510 0.99 - - - - 0.990 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
31. ABCC1 ENSGALG00000006646 2596 0.99 - - - - 0.990 - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
32. EPB41L1 ENSGALG00000034171 3616 0.99 - - - - 0.990 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
33. UQCRC2 ENSGALG00000002490 23477 0.99 - - - - 0.990 - - - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
34. TBC1D7 ENSGALG00000012731 4891 0.99 - - - - 0.990 - - - - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
35. NOL6 ENSGALG00000030730 7191 0.989 - - - - 0.989 - - - - - nucleolar protein 6
36. HYOU1 ENSGALG00000007659 3555 0.989 - - - - 0.989 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
37. BCL9 ENSGALG00000037655 4620 0.988 - - - - 0.988 - - - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
38. KCTD9 ENSGALG00000000275 3455 0.988 - - - - 0.988 - - - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
39. CCDC59 ENSGALG00000028648 9272 0.988 - - - - 0.988 - - - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
40. TMEM39B ENSGALG00000003287 4125 0.988 - - - - 0.988 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
41. AGPAT3 ENSGALG00000031932 6903 0.988 - - - - 0.988 - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
42. OPTC ENSGALG00000003554 3698 0.987 - - - - 0.987 - - - - - opticin [Source:NCBI gene;Acc:395130]
43. TRIM33 ENSGALG00000001976 7404 0.987 - - - - 0.987 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
44. USP1 ENSGALG00000010957 8297 0.986 - - - - 0.986 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
45. NSG1 ENSGALG00000015010 5829 0.986 - - - - 0.986 - - - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
46. TM2D2 ENSGALG00000003356 7088 0.985 - - - - 0.985 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
47. DNAJC2 ENSGALG00000008249 28064 0.985 - - - - 0.985 - - - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
48. SEC63 ENSGALG00000015308 11596 0.985 - - - - 0.985 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
49. M6PR ENSGALG00000031681 9442 0.985 - - - - 0.985 - - - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
50. THBS1 ENSGALG00000009626 3521 0.985 - - - - 0.985 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
51. UBE2G2 ENSGALG00000005667 12689 0.984 - - - - 0.984 - - - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
52. TBRG4 ENSGALG00000038102 9269 0.984 - - - - 0.984 - - - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
53. FAM98A ENSGALG00000010428 9585 0.984 - - - - 0.984 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
54. TMEM18 ENSGALG00000028744 11779 0.984 - - - - 0.984 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
55. CENPE ENSGALG00000013208 12337 0.984 - - - - 0.984 - - - - - centromere protein E, transcript variant X4
56. C4orf27 C4orf27 16724 0.984 - - - - 0.984 - - - - -
57. MRPS11 ENSGALG00000006777 16009 0.983 - - - - 0.983 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
58. RBM26 ENSGALG00000016910 13769 0.982 - - - - 0.982 - - - - - RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327]
59. LUC7L2 ENSGALG00000036238 11817 0.981 - - - - 0.981 - - - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
60. HOXB3 ENSGALG00000043219 5198 0.981 - - - - 0.981 - - - - - homeobox B3 [Source:NCBI gene;Acc:395502]
61. CWC22 ENSGALG00000009001 5984 0.981 - - - - 0.981 - - - - - CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
62. SAMM50 ENSGALG00000014194 20437 0.981 - - - - 0.981 - - - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
63. PGAM5 ENSGALG00000002137 7700 0.981 - - - - 0.981 - - - - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
64. ESRP2 ENSGALG00000003374 4436 0.979 - - - - 0.979 - - - - - epithelial splicing regulatory protein 2 [Source:NCBI gene;Acc:415710]
65. PSMD14 ENSGALG00000011128 13335 0.978 - - - - 0.978 - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
66. MORN4 ENSGALG00000006149 7772 0.977 - - - - 0.977 - - - - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
67. ETF1 ENSGALG00000002262 14560 0.977 - - - - 0.977 - - - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
68. RALB ENSGALG00000026493 14590 0.975 - - - - 0.975 - - - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
69. ZEB1 ENSGALG00000007260 9277 0.974 - - - - 0.974 - - - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
70. MCM4 ENSGALG00000012915 13151 0.974 - - - - 0.974 - - - - - minichromosome maintenance complex component 4
71. TCF7L2 ENSGALG00000008883 13688 0.973 - - - - 0.973 - - - - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]
72. OAF ENSGALG00000006715 12518 0.973 - - - - 0.973 - - - - - out at first homolog [Source:NCBI gene;Acc:395161]
73. NUP37 ENSGALG00000012759 9985 0.971 - - - - 0.971 - - - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
74. INCENP ENSGALG00000007537 16617 0.971 - - - - 0.971 - - - - - inner centromere protein [Source:NCBI gene;Acc:396270]
75. BRP44L BRP44L 30452 0.968 - - - - 0.968 - - - - -
76. CDC5L ENSGALG00000016704 22893 0.968 - - - - 0.968 - - - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
77. CREPT CREPT 17142 0.965 - - - - 0.965 - - - - -
78. MTF2 ENSGALG00000043087 15225 0.963 - - - - 0.963 - - - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
79. EPFIP1L ENSGALG00000007683 18050 0.961 - - - - 0.961 - - - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
80. EIF3L ENSGALG00000012296 42627 0.961 - - - - 0.961 - - - - - eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
81. ABCF2 ENSGALG00000034573 15639 0.961 - - - - 0.961 - - - - - ATP binding cassette subfamily F member 2 [Source:NCBI gene;Acc:426038]
82. PUF60 ENSGALG00000039901 26902 0.959 - - - - 0.959 - - - - - poly(U) binding splicing factor 60 [Source:NCBI gene;Acc:426402]
83. SMNDC1 ENSGALG00000008561 14415 0.955 - - - - 0.955 - - - - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
84. SMC3 ENSGALG00000008585 16618 0.954 - - - - 0.954 - - - - - structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
85. ENSGALG00000026041 ENSGALG00000026041 13390 0.948 - - - - 0.948 - - - - -
86. RPS6 ENSGALG00000015082 307412 0.948 - - - - 0.948 - - - - - ribosomal protein S6 [Source:NCBI gene;Acc:396148]
87. PAX-7 PAX-7 3856 0.943 - - - - 0.943 - - - - -
88. ENSGALG00000000360 ENSGALG00000000360 15320 0.931 - - - - 0.931 - - - - -
89. XRN2 ENSGALG00000008372 22164 0.928 - - - - 0.928 - - - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
90. RUNX1T1 ENSGALG00000033091 17529 0.924 - - - - 0.924 - - - - - RUNX1 translocation partner 1 [Source:NCBI gene;Acc:395503]
91. EIF3H ENSGALG00000040522 39919 0.92 - - - - 0.920 - - - - - eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
92. GPI ENSGALG00000004956 40030 0.897 - - - - 0.897 - - - - - glucose-6-phosphate isomerase [Source:NCBI gene;Acc:415783]
93. ATP5C1 53961 0.89 - - - - 0.890 - - - - - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
94. MARCKSL1 ENSGALG00000032335 88728 0.884 - - - - 0.884 - - - - - MARCKS like 1 [Source:NCBI gene;Acc:770764]
95. SNX12 ENSGALG00000005659 9503 0.881 - - - - 0.881 - - - - - sorting nexin 12 [Source:NCBI gene;Acc:428704]
96. PKM ENSGALG00000001992 93960 0.88 - - - - 0.880 - - - - - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
97. SEC61G ENSGALG00000037863 83362 0.88 - - - - 0.880 - - - - - Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
98. ACO1 ENSGALG00000002162 6645 0.879 - - - - 0.879 - - - - - aconitase 1, soluble [Source:NCBI gene;Acc:373916]
99. WBP11 ENSGALG00000011745 11182 0.879 - - - - 0.879 - - - - - WW domain binding protein 11, transcript variant X1
100. VHL ENSGALG00000028009 25009 0.877 - - - - 0.877 - - - - - von Hippel-Lindau tumor suppressor, transcript variant X1

There are 504 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA