Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VPS54

Gene Name Gene ID Reads Annotation
VPS54 ENSGALG00000008847 2140 VPS54, GARP complex subunit [Source:HGNC Symbol;Acc:HGNC:18652]











Genes with expression patterns similar to VPS54

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VPS54 ENSGALG00000008847 2140 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 VPS54, GARP complex subunit [Source:HGNC Symbol;Acc:HGNC:18652]
2. GGT1 ENSGALG00000006565 690 0.825 - - 0.825 - - - - - - - gamma-glutamyltransferase 1, transcript variant X11
3. PLEKHS1 ENSGALG00000020679 161 0.823 - - 0.823 - - - - - - - pleckstrin homology domain containing S1 [Source:HGNC Symbol;Acc:HGNC:26285]
4. RABL3 ENSGALG00000014949 2850 0.823 - - - - - - 0.823 - - - RAB, member of RAS oncogene family like 3 [Source:NCBI gene;Acc:418329]
5. CLUAP1 ENSGALG00000030877 4269 0.81 - - - - - - 0.810 - - - clusterin associated protein 1 [Source:NCBI gene;Acc:426077]
6. DMTF1 ENSGALG00000030844 3584 0.792 - - - - - - 0.792 - - - cyclin D binding myb like transcription factor 1 [Source:NCBI gene;Acc:418646]
7. NKAIN2 ENSGALG00000039756 755 0.789 - - 0.789 - - - - - - - sodium/potassium transporting ATPase interacting 2 [Source:NCBI gene;Acc:421720]
8. C1S ENSGALG00000014603 80 0.787 - - 0.787 - - - - - - - complement C1s [Source:NCBI gene;Acc:418294]
9. KNOP1 ENSGALG00000002042 6251 0.785 - - - - - - 0.785 - - - lysine-rich nucleolar protein 1, transcript variant X1
10. DHTKD1 ENSGALG00000003674 300 0.779 - - 0.779 - - - - - - - dehydrogenase E1 and transketolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23537]
11. NRG1 ENSGALG00000015422 196 0.777 - - 0.777 - - - - - - - neuregulin 1 [Source:NCBI gene;Acc:373906]
12. BCAS3 ENSGALG00000005295 2595 0.771 - - 0.771 - - - - - - - BCAS3, microtubule associated cell migration factor [Source:HGNC Symbol;Acc:HGNC:14347]
13. LPAR4 ENSGALG00000004121 2543 0.768 - - - - - - 0.768 - - - lysophosphatidic acid receptor 4 [Source:NCBI gene;Acc:422149]
14. ZFC3H1 ENSGALG00000010177 1326 0.768 - - 0.768 - - - - - - - zinc finger C3H1-type containing [Source:HGNC Symbol;Acc:HGNC:28328]
15. CCDC93 ENSGALG00000012129 2405 0.768 - - - - - - 0.768 - - - coiled-coil domain containing 93 [Source:NCBI gene;Acc:424277]
16. MICU3 ENSGALG00000013661 1466 0.767 - - 0.767 - - - - - - - mitochondrial calcium uptake family member 3 [Source:HGNC Symbol;Acc:HGNC:27820]
17. CCDC43 ENSGALG00000001022 5462 0.767 - - 0.767 - - - - - - - coiled-coil domain containing 43 [Source:NCBI gene;Acc:419971]
18. KLF5 ENSGALG00000016927 1080 0.767 - - 0.767 - - - - - - - Kruppel like factor 5 [Source:HGNC Symbol;Acc:HGNC:6349]
19. MSANTD4 ENSGALG00000017177 3306 0.766 - - - - - - 0.766 - - - Myb/SANT DNA binding domain containing 4 with coiled-coils [Source:HGNC Symbol;Acc:HGNC:29383]
20. PERP PERP 734 0.766 - - - - - - 0.766 - - -
21. RPP38 ENSGALG00000008794 1057 0.766 - - 0.766 - - - - - - - ribonuclease P/MRP subunit p38 [Source:NCBI gene;Acc:420530]
22. TRMT5 ENSGALG00000011904 1857 0.765 - - - - - - 0.765 - - - tRNA methyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:23141]
23. CDC7 ENSGALG00000006051 3996 0.763 - - - - - - 0.763 - - - cell division cycle 7 [Source:HGNC Symbol;Acc:HGNC:1745]
24. CTR9 ENSGALG00000005618 2173 0.762 - - 0.762 - - - - - - - CTR9 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:16850]
25. IGF2 ENSGALG00000035282 513 0.762 - - - - - - - 0.762 - - insulin like growth factor 2 [Source:NCBI gene;Acc:395097]
26. PHF21A ENSGALG00000008403 3090 0.754 - - - - - - - 0.754 - - PHD finger protein 21A [Source:NCBI gene;Acc:423199]
27. HARBI1 ENSGALG00000008354 751 0.753 - - 0.753 - - - - - - - harbinger transposase derived 1 [Source:HGNC Symbol;Acc:HGNC:26522]
28. SPATA5L1 ENSGALG00000005682 240 0.745 - - 0.745 - - - - - - - spermatogenesis associated 5 like 1 [Source:HGNC Symbol;Acc:HGNC:28762]
29. SLMO1 SLMO1 4357 0.742 - - - - - - 0.742 - - -
30. HS6ST1 ENSGALG00000002155 533 0.74 - - 0.740 - - - - - - - heparan sulfate 6-O-sulfotransferase 1 [Source:NCBI gene;Acc:395141]
31. S100A13 ENSGALG00000046614 201 0.739 - - 0.739 - - - - - - - S100 calcium binding protein A13 [Source:HGNC Symbol;Acc:HGNC:10490]
32. TMEM130 ENSGALG00000003569 949 0.738 - - - - - - 0.738 - - - transmembrane protein 130 [Source:HGNC Symbol;Acc:HGNC:25429]
33. OTUD1 ENSGALG00000026426 2120 0.738 - - 0.738 - - - - - - - OTU deubiquitinase 1 [Source:HGNC Symbol;Acc:HGNC:27346]
34. GTF2B ENSGALG00000006205 6950 0.738 - - 0.738 - - - - - - - general transcription factor IIB [Source:HGNC Symbol;Acc:HGNC:4648]
35. ARID2 ENSGALG00000033074 3461 0.737 - - - - - - 0.737 - - - AT-rich interaction domain 2 [Source:HGNC Symbol;Acc:HGNC:18037]
36. VANGL1 ENSGALG00000015025 67 0.731 - - 0.731 - - - - - - - VANGL planar cell polarity protein 1 [Source:HGNC Symbol;Acc:HGNC:15512]
37. EXOSC9 ENSGALG00000011884 3403 0.731 - - - - - - 0.731 - - - exosome component 9 [Source:NCBI gene;Acc:619530]
38. DSCR3 3583 0.73 - - - - - - 0.730 - - - DSCR3 arrestin fold containing, transcript variant X1
39. PARK2 166 0.73 - - 0.730 - - - - - - - parkin RBR E3 ubiquitin protein ligase
40. SFXN1 ENSGALG00000033956 2713 0.729 - - - - - - 0.729 - - - sideroflexin 1 [Source:NCBI gene;Acc:416221]
41. ENSGALG00000009516 ENSGALG00000009516 5256 0.729 - - - - - - 0.729 - - -
42. C4H4ORF29 C4H4ORF29 2442 0.728 - - - - - - 0.728 - - -
43. GFPT2 ENSGALG00000039705 562 0.724 - - 0.724 - - - - - - - glutamine-fructose-6-phosphate transaminase 2 [Source:HGNC Symbol;Acc:HGNC:4242]
44. SYT8 ENSGALG00000006602 369 0.724 - - 0.724 - - - - - - - synaptotagmin 8 [Source:HGNC Symbol;Acc:HGNC:19264]
45. FGF7 ENSGALG00000028158 189 0.723 - - 0.723 - - - - - - - fibroblast growth factor 7 [Source:NCBI gene;Acc:415439]
46. CENPJ ENSGALG00000017148 1415 0.723 - - 0.723 - - - - - - - centromere protein J [Source:HGNC Symbol;Acc:HGNC:17272]
47. RFFL ENSGALG00000002225 928 0.722 - - - - - - - 0.722 - - ring finger and FYVE like domain containing E3 ubiquitin protein ligase [Source:NCBI gene;Acc:417529]
48. E2F8 ENSGALG00000041299 1535 0.721 - - - - - - 0.721 - - - E2F transcription factor 8 [Source:HGNC Symbol;Acc:HGNC:24727]
49. TRIT1 ENSGALG00000003851 1518 0.719 - - - - - - 0.719 - - - tRNA isopentenyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:20286]
50. RBM27 ENSGALG00000007516 3909 0.718 - - - - - - 0.718 - - - RNA binding motif protein 27, transcript variant X3
51. GTPBP2 ENSGALG00000010315 1170 0.717 - - - - - - - - 0.717 - GTP binding protein 2
52. ADAM9 ENSGALG00000003398 1299 0.716 - - 0.716 - - - - - - - ADAM metallopeptidase domain 9 [Source:NCBI gene;Acc:426781]
53. EVL ENSGALG00000011209 5440 0.716 - - 0.716 - - - - - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
54. CCDC167 ENSGALG00000010151 3567 0.715 - - - - - - 0.715 - - - coiled-coil domain containing 167 [Source:NCBI gene;Acc:421433]
55. NDUFB3 ENSGALG00000008239 15511 0.715 - - - - - - 0.715 - - - NADH:ubiquinone oxidoreductase subunit B3 [Source:NCBI gene;Acc:424078]
56. PUS10 ENSGALG00000007835 1651 0.714 - - - - - - 0.714 - - - pseudouridylate synthase 10 [Source:NCBI gene;Acc:421198]
57. OSGIN1 ENSGALG00000003323 7 0.713 - - 0.713 - - - - - - - oxidative stress induced growth inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:30093]
58. AOX1 ENSGALG00000008185 14 0.713 - - 0.713 - - - - - - - aldehyde oxidase 1 [Source:NCBI gene;Acc:424071]
59. ADCYAP1 ENSGALG00000014858 9 0.713 - - 0.713 - - - - - - - adenylate cyclase activating polypeptide 1 [Source:NCBI gene;Acc:408251]
60. LOC771308 ENSGALG00000000274 7 0.713 - - 0.713 - - - - - - - growth hormone releasing hormone receptor, transcript variant X2
61. SCG3 ENSGALG00000043583 1247 0.713 - - - - - - 0.713 - - - secretogranin III [Source:NCBI gene;Acc:415424]
62. ATMIN ENSGALG00000040475 16 0.713 - - 0.713 - - - - - - - ATM interactor [Source:HGNC Symbol;Acc:HGNC:29034]
63. MMR1L2 ENSGALG00000028357 7 0.713 - - 0.713 - - - - - - - Gallus gallus macrophage mannose receptor 1-like 2 (MMR1L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319010]
64. SAR1B ENSGALG00000038753 6493 0.713 - - 0.713 - - - - - - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
65. ALPK3 ENSGALG00000037950 54 0.713 - - 0.713 - - - - - - - alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:17574]
66. TEX33 ENSGALG00000012490 11 0.713 - - 0.713 - - - - - - - testis expressed 33, transcript variant X2
67. RAB3C ENSGALG00000014726 10 0.713 - - 0.713 - - - - - - - RAB3C, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30269]
68. SGMS2 ENSGALG00000010535 42 0.713 - - 0.713 - - - - - - - sphingomyelin synthase 2 [Source:NCBI gene;Acc:422529]
69. PFDN1 ENSGALG00000000946 18822 0.712 - - - - - - 0.712 - - - prefoldin subunit 1 [Source:NCBI gene;Acc:416142]
70. STC2 ENSGALG00000002893 2119 0.712 - - - - - - 0.712 - - - stanniocalcin 2 [Source:HGNC Symbol;Acc:HGNC:11374]
71. SCG2 ENSGALG00000029819 26 0.711 - - 0.711 - - - - - - - secretogranin II [Source:HGNC Symbol;Acc:HGNC:10575]
72. GAD2 ENSGALG00000040436 124 0.711 - - 0.711 - - - - - - - glutamate decarboxylase 2 [Source:HGNC Symbol;Acc:HGNC:4093]
73. CHMP3 ENSGALG00000015805 11581 0.711 - - - - - - 0.711 - - - charged multivesicular body protein 3
74. PQLC3 ENSGALG00000016449 39 0.71 - - 0.710 - - - - - - - PQ loop repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:28503]
75. RNASEL ENSGALG00000042986 460 0.71 - - 0.710 - - - - - - - ribonuclease L [Source:NCBI gene;Acc:424410]
76. FAR-2 FAR-2 24 0.71 - - 0.710 - - - - - - -
77. TSG101 ENSGALG00000006312 8289 0.709 - - - - - - 0.709 - - - tumor susceptibility gene 101 [Source:NCBI gene;Acc:423082]
78. NUDCD1 ENSGALG00000040879 2965 0.709 - - 0.709 - - - - - - - NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]
79. RBBP8 ENSGALG00000014982 3255 0.709 - - - - - - 0.709 - - - RB binding protein 8, endonuclease [Source:HGNC Symbol;Acc:HGNC:9891]
80. USP2 ENSGALG00000006755 2843 0.708 - - - - - - - 0.708 - - ubiquitin specific peptidase 2, transcript variant X5
81. GPR27 ENSGALG00000027091 8111 0.708 - - - - - - 0.708 - - - G protein-coupled receptor 27
82. ELFN2 ENSGALG00000012446 11 0.708 - - 0.708 - - - - - - - extracellular leucine rich repeat and fibronectin type III domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29396]
83. ZDHHC7 ENSGALG00000042522 1774 0.708 - - - - - - 0.708 - - - zinc finger DHHC-type containing 7 [Source:HGNC Symbol;Acc:HGNC:18459]
84. ODZ1 ODZ1 124 0.707 - - 0.707 - - - - - - -
85. CLDN15 ENSGALG00000038964 21 0.705 - - 0.705 - - - - - - - claudin 15, transcript variant X4
86. ENSGALG00000001734 ENSGALG00000001734 408 0.705 - - 0.705 - - - - - - -
87. ELMOD1 ENSGALG00000017169 2303 0.705 - - - - - - - - 0.705 - ELMO domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25334]
88. NELFE ENSGALG00000045676 6830 0.704 - - - - - - 0.704 - - - negative elongation factor complex member E
89. SVIL ENSGALG00000007331 12032 0.704 - - - - - - 0.704 - - - supervillin [Source:HGNC Symbol;Acc:HGNC:11480]
90. CRLF3 ENSGALG00000003284 6002 0.704 - - - - - - 0.704 - - - cytokine receptor like factor 3 [Source:NCBI gene;Acc:417407]
91. TMBIM4 ENSGALG00000009879 282 0.704 - - - - - - - 0.704 - - transmembrane BAX inhibitor motif containing 4
92. BPGM ENSGALG00000013069 4520 0.704 - - - - - - - 0.704 - - bisphosphoglycerate mutase [Source:NCBI gene;Acc:418172]
93. TADA2B ENSGALG00000015547 55 0.703 - - 0.703 - - - - - - - transcriptional adaptor 2B [Source:HGNC Symbol;Acc:HGNC:30781]
94. WHSC2 WHSC2 3673 0.702 - - - - - - 0.702 - - -
95. PLCH1 ENSGALG00000010312 1294 0.701 - - - - - - 0.701 - - - phospholipase C eta 1 [Source:HGNC Symbol;Acc:HGNC:29185]
96. GPR89 GPR89 2253 0.701 - - 0.701 - - - - - - -
97. CNOT8 ENSGALG00000003950 8271 0.701 - - - - - - 0.701 - - - CCR4-NOT transcription complex subunit 8 [Source:NCBI gene;Acc:416255]
98. PTPRE ENSGALG00000009823 250 0.701 - - 0.701 - - - - - - - protein tyrosine phosphatase, receptor type E [Source:HGNC Symbol;Acc:HGNC:9669]
99. SEH1L ENSGALG00000013872 315 0.701 - - 0.701 - - - - - - - SEH1 like nucleoporin [Source:HGNC Symbol;Acc:HGNC:30379]
100. DENND5B 4077 0.7 - - - - - - 0.700 - - - DENN domain containing 5B, transcript variant X1

There are 2 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA