Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VPS53

Gene Name Gene ID Reads Annotation
VPS53 ENSGALG00000042071 1158 VPS53, GARP complex subunit [Source:NCBI gene;Acc:417622]











Genes with expression patterns similar to VPS53

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VPS53 ENSGALG00000042071 1158 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 VPS53, GARP complex subunit [Source:NCBI gene;Acc:417622]
2. CD300A CD300A 173 0.883 - - 0.883 - - - - - - -
3. CCDC135 CCDC135 220 0.864 - - 0.864 - - - - - - -
4. ZZEF1 ENSGALG00000001546 767 0.864 - - 0.864 - - - - - - - zinc finger ZZ-type and EF-hand domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29027]
5. DLX6 ENSGALG00000023195 29 0.856 - - 0.856 - - - - - - - distal-less homeobox 6 [Source:NCBI gene;Acc:772070]
6. MIS12 ENSGALG00000001632 372 0.855 - - 0.855 - - - - - - - MIS12, kinetochore complex component [Source:NCBI gene;Acc:693254]
7. CNKSR1 ENSGALG00000046299 195 0.851 - - 0.851 - - - - - - - connector enhancer of kinase suppressor of Ras 1 [Source:HGNC Symbol;Acc:HGNC:19700]
8. TMEM132B ENSGALG00000002742 122 0.85 - - 0.850 - - - - - - - transmembrane protein 132B [Source:HGNC Symbol;Acc:HGNC:29397]
9. PHTF2 ENSGALG00000008335 722 0.847 - - 0.847 - - - - - - - putative homeodomain transcription factor 2 [Source:NCBI gene;Acc:417728]
10. ACSF3 ENSGALG00000035225 261 0.847 - - 0.847 - - - - - - - acyl-CoA synthetase family member 3 [Source:HGNC Symbol;Acc:HGNC:27288]
11. DNALI1 ENSGALG00000001996 64 0.844 - - 0.844 - - - - - - - dynein axonemal light intermediate chain 1 [Source:HGNC Symbol;Acc:HGNC:14353]
12. ALKBH8 ENSGALG00000017170 699 0.842 - - 0.842 - - - - - - - alkB homolog 8, tRNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:25189]
13. AHR2 ENSGALG00000023742 21 0.841 - - 0.841 - - - - - - - Gallus gallus aryl hydrocarbon receptor 2 (AHR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319008]
14. EML5 ENSGALG00000010639 25 0.84 - - 0.840 - - - - - - - echinoderm microtubule associated protein like 5, transcript variant X1
15. KPNA5 ENSGALG00000014937 28 0.839 - - 0.839 - - - - - - - karyopherin subunit alpha 5 [Source:HGNC Symbol;Acc:HGNC:6398]
16. C15orf60 C15orf60 16 0.838 - - 0.838 - - - - - - -
17. ENSGALG00000026925 ENSGALG00000026925 119 0.837 - - 0.837 - - - - - - -
18. FSCN2 ENSGALG00000023354 13 0.837 - - 0.837 - - - - - - - fascin actin-bundling protein 2, retinal [Source:NCBI gene;Acc:429198]
19. EPHA1 ENSGALG00000014687 174 0.835 - - 0.835 - - - - - - - EPH receptor A1 [Source:NCBI gene;Acc:378782]
20. NHLRC2 ENSGALG00000008946 387 0.834 - - 0.834 - - - - - - - NHL repeat containing 2 [Source:NCBI gene;Acc:423903]
21. ATXN3 ENSGALG00000010766 48 0.834 - - 0.834 - - - - - - - ataxin 3 [Source:NCBI gene;Acc:378424]
22. APH1A ENSGALG00000045163 146 0.833 - - 0.833 - - - - - - - aph-1 homolog A, gamma-secretase subunit [Source:HGNC Symbol;Acc:HGNC:29509]
23. NUDT4 ENSGALG00000011285 2998 0.831 - - 0.831 - - - - - - - nudix hydrolase 4, transcript variant X5
24. GALNT11 ENSGALG00000006233 210 0.831 - - 0.831 - - - - - - - polypeptide N-acetylgalactosaminyltransferase 11 [Source:HGNC Symbol;Acc:HGNC:19875]
25. RIPK4 ENSGALG00000040189 102 0.83 - - 0.830 - - - - - - - receptor interacting serine/threonine kinase 4 [Source:HGNC Symbol;Acc:HGNC:496]
26. DFFB ENSGALG00000036295 88 0.83 - - 0.830 - - - - - - - DNA fragmentation factor subunit beta [Source:NCBI gene;Acc:374158]
27. FAM46A ENSGALG00000035903 891 0.829 - - 0.829 - - - - - - - family with sequence similarity 46 member A [Source:NCBI gene;Acc:421845]
28. ENSGALG00000028778 ENSGALG00000028778 47 0.827 - - 0.827 - - - - - - -
29. ENSGALG00000005723 ENSGALG00000005723 36 0.827 - - 0.827 - - - - - - -
30. PIP5K1C ENSGALG00000000784 492 0.826 - - 0.826 - - - - - - - Gallus gallus phosphatidylinositol-4-phosphate 5-kinase, type I, gamma (PIP5K1C), mRNA. [Source:RefSeq mRNA;Acc:NM_001319021]
31. FAM199X ENSGALG00000008872 44 0.825 - - 0.825 - - - - - - - family with sequence similarity 199, X-linked [Source:HGNC Symbol;Acc:HGNC:25195]
32. CREB3 ENSGALG00000002523 23 0.822 - - 0.822 - - - - - - - cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
33. OTOA ENSGALG00000007070 94 0.822 - - 0.822 - - - - - - - otoancorin [Source:HGNC Symbol;Acc:HGNC:16378]
34. TOX3 ENSGALG00000034649 54 0.822 - - 0.822 - - - - - - - TOX high mobility group box family member 3 [Source:NCBI gene;Acc:415724]
35. LLGL1 ENSGALG00000014408 15 0.821 - - 0.821 - - - - - - - LLGL1, scribble cell polarity complex component [Source:HGNC Symbol;Acc:HGNC:6628]
36. PRDM10 632 0.821 - - 0.821 - - - - - - - PR domain 10, transcript variant X10
37. ZC4H2 ENSGALG00000042725 361 0.82 - - 0.820 - - - - - - - zinc finger C4H2-type containing, transcript variant X4
38. PDZK1IP1 ENSGALG00000010473 551 0.82 - - 0.820 - - - - - - - PDZK1 interacting protein 1 [Source:NCBI gene;Acc:424619]
39. WDR5 ENSGALG00000002659 13008 0.82 - - 0.820 - - - - - - - WD repeat domain 5 [Source:NCBI gene;Acc:417144]
40. FAM3B ENSGALG00000016140 111 0.818 - - 0.818 - - - - - - - family with sequence similarity 3 member B [Source:HGNC Symbol;Acc:HGNC:1253]
41. BMP2K ENSGALG00000010885 37 0.818 - - 0.818 - - - - - - - BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
42. SEC22C ENSGALG00000005268 1151 0.815 - - 0.815 - - - - - - - SEC22 homolog C, vesicle trafficking protein [Source:HGNC Symbol;Acc:HGNC:16828]
43. PLXNB2 ENSGALG00000039861 338 0.813 - - 0.813 - - - - - - - plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]
44. PRC1 ENSGALG00000012836 20 0.813 - - 0.813 - - - - - - - protein regulator of cytokinesis 1 [Source:NCBI gene;Acc:770336]
45. UBAP2L ENSGALG00000024094 853 0.811 - - 0.811 - - - - - - - ubiquitin associated protein 2 like [Source:HGNC Symbol;Acc:HGNC:29877]
46. SCNM1 ENSGALG00000046607 665 0.809 - - 0.809 - - - - - - - sodium channel modifier 1 [Source:HGNC Symbol;Acc:HGNC:23136]
47. TBC1D8B ENSGALG00000009040 75 0.807 - - 0.807 - - - - - - - TBC1 domain family member 8B [Source:HGNC Symbol;Acc:HGNC:24715]
48. MST1 ENSGALG00000002722 994 0.805 - - 0.805 - - - - - - - macrophage stimulating 1 (hepatocyte growth factor-like) [Source:NCBI gene;Acc:396135]
49. RAB11FIP1 41 0.804 - - 0.804 - - - - - - - RAB11 family interacting protein 1, transcript variant X2
50. PKD2 ENSGALG00000010921 55 0.803 - - 0.803 - - - - - - - polycystin 2, transient receptor potential cation channel [Source:NCBI gene;Acc:422585]
51. ACVR1 ENSGALG00000037301 6448 0.803 - - 0.803 - - - - - - - activin A receptor type 1 [Source:NCBI gene;Acc:395246]
52. ECHDC2 ENSGALG00000010647 4413 0.802 - - 0.802 - - - - - - - enoyl-CoA hydratase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23408]
53. SCN5A ENSGALG00000006112 137 0.801 - - 0.801 - - - - - - - Gallus gallus sodium voltage-gated channel alpha subunit 5 (SCN5A), mRNA. [Source:RefSeq mRNA;Acc:NM_001318446]
54. FMN2 ENSGALG00000031427 77 0.799 - - 0.799 - - - - - - - formin 2 [Source:HGNC Symbol;Acc:HGNC:14074]
55. DIXDC1 ENSGALG00000007929 67 0.798 - - 0.798 - - - - - - - DIX domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23695]
56. STXBP1 ENSGALG00000040003 157 0.798 - - 0.798 - - - - - - - syntaxin binding protein 1 [Source:NCBI gene;Acc:404293]
57. RMDN3 ENSGALG00000035242 680 0.796 - - 0.796 - - - - - - - regulator of microtubule dynamics 3 [Source:HGNC Symbol;Acc:HGNC:25550]
58. CD82 ENSGALG00000038217 1266 0.796 - - 0.796 - - - - - - - CD82 molecule [Source:NCBI gene;Acc:423172]
59. KIDINS220 ENSGALG00000016409 854 0.795 - - 0.795 - - - - - - - kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
60. ABCC1 ENSGALG00000006646 2596 0.793 - - 0.793 - - - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
61. DVL3 ENSGALG00000008414 38 0.793 - - 0.793 - - - - - - - dishevelled segment polarity protein 3 [Source:HGNC Symbol;Acc:HGNC:3087]
62. ENSGALG00000004127 ENSGALG00000004127 566 0.793 - - 0.793 - - - - - - -
63. SIL1 ENSGALG00000002457 147 0.792 - - 0.792 - - - - - - - SIL1 nucleotide exchange factor [Source:HGNC Symbol;Acc:HGNC:24624]
64. HSBP1 ENSGALG00000043039 2365 0.791 - - 0.791 - - - - - - - heat shock factor binding protein 1 [Source:NCBI gene;Acc:415813]
65. PRKCE ENSGALG00000010000 99 0.789 - - 0.789 - - - - - - - protein kinase C epsilon, transcript variant X1
66. NCBP2 ENSGALG00000006843 938 0.786 - - 0.786 - - - - - - - nuclear cap binding protein subunit 2, 20kDa [Source:NCBI gene;Acc:424889]
67. MTMR14 ENSGALG00000006601 1435 0.78 - - 0.780 - - - - - - - myotubularin related protein 14 [Source:NCBI gene;Acc:416048]
68. CDC73 ENSGALG00000002469 4586 0.779 - - 0.779 - - - - - - - cell division cycle 73 [Source:NCBI gene;Acc:424356]
69. FANCB ENSGALG00000016569 1193 0.779 - - 0.779 - - - - - - - FA complementation group B [Source:NCBI gene;Acc:418628]
70. ALG11 ENSGALG00000017022 619 0.777 - - 0.777 - - - - - - - ALG11, alpha-1,2-mannosyltransferase [Source:NCBI gene;Acc:418880]
71. GABRA1 ENSGALG00000001698 120 0.777 - - 0.777 - - - - - - - gamma-aminobutyric acid type A receptor alpha1 subunit [Source:NCBI gene;Acc:374214]
72. PYGO1 ENSGALG00000004369 527 0.777 - - 0.777 - - - - - - - pygopus family PHD finger 1 [Source:NCBI gene;Acc:415408]
73. gga-mir-6561 ENSGALG00000026650 135 0.772 - - 0.772 - - - - - - - gga-mir-6561 [Source:miRBase;Acc:MI0022379]
74. KLF6 ENSGALG00000033178 679 0.77 - - 0.770 - - - - - - - Kruppel like factor 6 [Source:NCBI gene;Acc:420463]
75. BLIMP-1 BLIMP-1 214 0.769 - - - - - - - - - 0.769
76. ENSGALG00000008915 ENSGALG00000008915 1120 0.769 - - 0.769 - - - - - - -
77. CCDC18 ENSGALG00000005889 628 0.768 - - 0.768 - - - - - - - coiled-coil domain containing 18 [Source:NCBI gene;Acc:424497]
78. FMN1 ENSGALG00000009723 100 0.767 - - - - - 0.767 - - - - formin 1 [Source:NCBI gene;Acc:386747]
79. CPSF2 ENSGALG00000010783 5236 0.762 - - 0.762 - - - - - - - cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:423416]
80. CNP1 ENSGALG00000028638 56 0.76 - - 0.760 - - - - - - - C-type natriuretic peptide 1 [Source:NCBI gene;Acc:100499455]
81. ENSGALG00000011942 ENSGALG00000011942 175 0.758 - - 0.758 - - - - - - -
82. NUBPL ENSGALG00000009983 3328 0.756 - - 0.756 - - - - - - - nucleotide binding protein like [Source:HGNC Symbol;Acc:HGNC:20278]
83. VTI1B ENSGALG00000009526 133 0.755 - - 0.755 - - - - - - - vesicle transport through interaction with t-SNAREs 1B [Source:HGNC Symbol;Acc:HGNC:17793]
84. FOXN2 ENSGALG00000008942 468 0.753 - - 0.753 - - - - - - - forkhead box N2 [Source:NCBI gene;Acc:421288]
85. VWDE ENSGALG00000042443 160 0.751 - - 0.751 - - - - - - - von Willebrand factor D and EGF domains [Source:HGNC Symbol;Acc:HGNC:21897]
86. NRXN1 ENSGALG00000009107 277 0.751 - - 0.751 - - - - - - - neurexin 1 [Source:NCBI gene;Acc:395398]
87. ANKRD16 ENSGALG00000008168 475 0.745 - - 0.745 - - - - - - - ankyrin repeat domain 16 [Source:NCBI gene;Acc:416688]
88. DYNLRB2 ENSGALG00000005402 630 0.745 - - 0.745 - - - - - - - dynein light chain roadblock-type 2 [Source:NCBI gene;Acc:415802]
89. UXS1 ENSGALG00000016801 3724 0.745 - - 0.745 - - - - - - - UDP-glucuronate decarboxylase 1 [Source:HGNC Symbol;Acc:HGNC:17729]
90. KCNE3 ENSGALG00000022696 561 0.744 - - - - - 0.744 - - - - potassium voltage-gated channel subfamily E regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
91. THNSL1 ENSGALG00000007677 287 0.741 - - 0.741 - - - - - - - threonine synthase like 1 [Source:HGNC Symbol;Acc:HGNC:26160]
92. HKDC1 ENSGALG00000021039 134 0.738 - - 0.738 - - - - - - - hexokinase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23302]
93. SNORD103 SNORD103 25 0.737 - - - - - - - - - 0.737
94. C1H11ORF70 ENSGALG00000017189 395 0.737 - - 0.737 - - - - - - - chromosome 1 open reading frame, human C11orf70 [Source:NCBI gene;Acc:418985]
95. FBLN1 ENSGALG00000014233 5062 0.737 - - 0.737 - - - - - - - fibulin 1 [Source:NCBI gene;Acc:373979]
96. TWF1 ENSGALG00000009595 6 0.737 - - - - - - - - - 0.737 twinfilin actin binding protein 1 [Source:NCBI gene;Acc:417797]
97. SUN1 ENSGALG00000003781 3442 0.736 - - 0.736 - - - - - - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
98. HNRNPD ENSGALG00000011184 10686 0.736 - - 0.736 - - - - - - - heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
99. C3H6ORF203 ENSGALG00000015316 513 0.734 - - 0.734 - - - - - - - chromosome 3 open reading frame, human C6orf203 [Source:NCBI gene;Acc:421779]
100. RAB11A ENSGALG00000007615 9154 0.731 - - 0.731 - - - - - - - RAB11A, member RAS oncogene family [Source:NCBI gene;Acc:415544]

There are 91 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA