Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VPS39

Gene Name Gene ID Reads Annotation
VPS39 ENSGALG00000008991 4018 VPS39, HOPS complex subunit [Source:NCBI gene;Acc:423230]











Genes with expression patterns similar to VPS39

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VPS39 ENSGALG00000008991 4018 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 VPS39, HOPS complex subunit [Source:NCBI gene;Acc:423230]
2. RAB14 ENSGALG00000001474 12617 1.908 - - - - - - 1.000 0.908 - - RAB14, member RAS oncogene family [Source:NCBI gene;Acc:417119]
3. SMNDC1 ENSGALG00000008561 14415 1.844 - - - - - - 0.957 0.887 - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
4. MSX2 ENSGALG00000038848 6950 1.661 - - - - - - 0.957 - 0.704 - msh homeobox 2 [Source:NCBI gene;Acc:395245]
5. WNT7B ENSGALG00000036255 3343 1 - - - - - - 1.000 - - - Wnt family member 7B [Source:NCBI gene;Acc:427937]
6. PASK ENSGALG00000006016 3096 1 - - - - - - 1.000 - - - PAS domain containing serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:17270]
7. ENSGALG00000003150 ENSGALG00000003150 10001 1 - - - - - - 1.000 - - -
8. PSMD9 ENSGALG00000004352 7284 1 - - - - - - 1.000 - - - proteasome 26S subunit, non-ATPase 9 [Source:NCBI gene;Acc:416853]
9. NEDD4L ENSGALG00000034584 5881 1 - - - - - - 1.000 - - - neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase, transcript variant X6
10. RNF114 ENSGALG00000008021 6078 1 - - - - - - 1.000 - - - ring finger protein 114 [Source:NCBI gene;Acc:414881]
11. CCNY ENSGALG00000007076 3921 1 - - - - - - 1.000 - - - cyclin Y [Source:HGNC Symbol;Acc:HGNC:23354]
12. ING3 ENSGALG00000009023 4961 1 - - - - - - 1.000 - - - inhibitor of growth family member 3 [Source:NCBI gene;Acc:417762]
13. SNX24 ENSGALG00000018874 4482 1 - - - - - - 1.000 - - - sorting nexin 24 [Source:NCBI gene;Acc:426798]
14. ARHGEF28 ENSGALG00000014923 2523 1 - - - - - - 1.000 - - - Rho guanine nucleotide exchange factor 28 [Source:HGNC Symbol;Acc:HGNC:30322]
15. TTLL5 ENSGALG00000010340 4875 1 - - - - - - 1.000 - - - tubulin tyrosine ligase like 5 [Source:NCBI gene;Acc:423367]
16. POLDIP3 ENSGALG00000011863 6424 1 - - - - - - 1.000 - - - DNA polymerase delta interacting protein 3 [Source:NCBI gene;Acc:417974]
17. PTGR2 ENSGALG00000009269 4991 0.999 - - - - - - 0.999 - - - prostaglandin reductase 2 [Source:NCBI gene;Acc:423244]
18. ISCA1 ENSGALG00000012606 10342 0.999 - - - - - - 0.999 - - - iron-sulfur cluster assembly 1 [Source:NCBI gene;Acc:427463]
19. IL17RD ENSGALG00000005499 5844 0.999 - - - - - - 0.999 - - - interleukin 17 receptor D [Source:NCBI gene;Acc:395186]
20. DGKD ENSGALG00000001730 4456 0.999 - - - - - - 0.999 - - - diacylglycerol kinase delta [Source:HGNC Symbol;Acc:HGNC:2851]
21. SULF1 ENSGALG00000039553 5115 0.999 - - - - - - 0.999 - - - sulfatase 1 [Source:HGNC Symbol;Acc:HGNC:20391]
22. GNA13 ENSGALG00000036028 9791 0.998 - - - - - - 0.998 - - - G protein subunit alpha 13 [Source:HGNC Symbol;Acc:HGNC:4381]
23. ERP29 ENSGALG00000023510 47100 0.998 - - - - - - 0.998 - - - endoplasmic reticulum protein 29 [Source:NCBI gene;Acc:416882]
24. MMP2 ENSGALG00000003580 13120 0.998 - - - - - - 0.998 - - - matrix metallopeptidase 2 [Source:NCBI gene;Acc:386583]
25. MED1 ENSGALG00000001708 9556 0.998 - - - - - - - 0.998 - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
26. UQCC UQCC 5913 0.997 - - - - - - - 0.997 - -
27. NT5DC2 ENSGALG00000035596 27633 0.997 - - - - - - 0.997 - - - 5'-nucleotidase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25717]
28. ATOX1 ENSGALG00000004176 16486 0.997 - - - - - - - 0.997 - - antioxidant 1 copper chaperone [Source:NCBI gene;Acc:770231]
29. KIF4A ENSGALG00000004195 25487 0.997 - - - - - - 0.997 - - - kinesin family member 4A [Source:NCBI gene;Acc:395823]
30. NUP93 ENSGALG00000003010 16504 0.997 - - - - - - 0.997 - - - nucleoporin 93 [Source:NCBI gene;Acc:415693]
31. PRRC1 ENSGALG00000014703 9962 0.997 - - - - - - 0.997 - - - proline rich coiled-coil 1 [Source:NCBI gene;Acc:427127]
32. NEK1 ENSGALG00000009683 4305 0.996 - - - - - - - 0.996 - - NIMA related kinase 1 [Source:HGNC Symbol;Acc:HGNC:7744]
33. ELP3 ENSGALG00000016624 4483 0.996 - - - - - - - 0.996 - - elongator acetyltransferase complex subunit 3 [Source:NCBI gene;Acc:422021]
34. WDFY3 10775 0.996 - - - - - - 0.996 - - - WD repeat and FYVE domain containing 3, transcript variant X7
35. GTF2H1 ENSGALG00000042340 1553 0.996 - - - - - - - 0.996 - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
36. XPOT ENSGALG00000009835 2953 0.996 - - - - - - - 0.996 - - exportin for tRNA [Source:NCBI gene;Acc:417824]
37. STXBP3 ENSGALG00000002001 1740 0.996 - - - - - - - 0.996 - - syntaxin binding protein 3 [Source:NCBI gene;Acc:424341]
38. EFNB1 ENSGALG00000036539 2706 0.996 - - - - - - - 0.996 - - ephrin B1 [Source:NCBI gene;Acc:395896]
39. FPGS ENSGALG00000042460 1749 0.996 - - - - - - - 0.996 - - folylpolyglutamate synthase [Source:HGNC Symbol;Acc:HGNC:3824]
40. ERAL1 ENSGALG00000003995 1114 0.996 - - - - - - - 0.996 - - Era like 12S mitochondrial rRNA chaperone 1 [Source:NCBI gene;Acc:374084]
41. CHEK2 ENSGALG00000005695 1558 0.996 - - - - - - - 0.996 - - checkpoint kinase 2 [Source:NCBI gene;Acc:768913]
42. CRADD ENSGALG00000011297 1653 0.996 - - - - - - - 0.996 - - CASP2 and RIPK1 domain containing adaptor with death domain [Source:NCBI gene;Acc:417900]
43. C12orf45 C12orf45 2445 0.996 - - - - - - - 0.996 - -
44. PDE4B ENSGALG00000011094 1871 0.996 - - - - - - - 0.996 - - phosphodiesterase 4B [Source:NCBI gene;Acc:424700]
45. HEXA ENSGALG00000043828 4789 0.996 - - - - - - - 0.996 - - hexosaminidase subunit alpha [Source:NCBI gene;Acc:415320]
46. C20ORF7 C20ORF7 2383 0.996 - - - - - - - 0.996 - -
47. ERICH1 ENSGALG00000031021 1495 0.996 - - - - - - - 0.996 - - glutamate rich 1 [Source:NCBI gene;Acc:421904]
48. DUSP3 ENSGALG00000035369 1790 0.996 - - - - - - - 0.996 - - dual specificity phosphatase 3
49. PDIA3 ENSGALG00000008348 4982 0.995 - - - - - - - 0.995 - - protein disulfide isomerase family A member 3 [Source:NCBI gene;Acc:373899]
50. PRKACB ENSGALG00000028530 12506 0.995 - - - - - - 0.995 - - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
51. ARPC5L ENSGALG00000001014 5642 0.995 - - - - - - - 0.995 - - actin related protein 2/3 complex subunit 5 like [Source:HGNC Symbol;Acc:HGNC:23366]
52. ANKS1B ENSGALG00000011549 440 0.995 - - - - - - - 0.995 - - ankyrin repeat and sterile alpha motif domain containing 1B [Source:NCBI gene;Acc:417927]
53. ANKRD49 ENSGALG00000017210 3247 0.995 - - - - - - - 0.995 - - ankyrin repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:25970]
54. ADAMTSL1 1479 0.995 - - - - - - - 0.995 - - ADAMTS like 1, transcript variant X3
55. PIK3C2B ENSGALG00000037043 4522 0.995 - - - - - - - 0.995 - - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
56. WDR92 ENSGALG00000008760 3934 0.995 - - - - - - - 0.995 - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
57. MAP9 ENSGALG00000020253 785 0.995 - - - - - - - 0.995 - - microtubule associated protein 9, transcript variant X7
58. FAM69B ENSGALG00000002437 1253 0.995 - - - - - - - 0.995 - - family with sequence similarity 69 member B [Source:HGNC Symbol;Acc:HGNC:28290]
59. BCL2L1 ENSGALG00000006211 2490 0.995 - - - - - - - 0.995 - - BCL2 like 1 [Source:NCBI gene;Acc:373954]
60. PDS5B ENSGALG00000017070 3998 0.994 - - - - - - - 0.994 - - PDS5 cohesin associated factor B [Source:NCBI gene;Acc:418910]
61. Sep-02_1 Sep-02_1 19203 0.994 - - - - - - 0.994 - - -
62. IFT81 ENSGALG00000003854 2534 0.994 - - - - - - - 0.994 - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
63. FZD6 ENSGALG00000030626 3336 0.994 - - - - - - - 0.994 - - frizzled class receptor 6 [Source:NCBI gene;Acc:378788]
64. SOX9 ENSGALG00000004386 14802 0.993 - - - - - - - 0.993 - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
65. FABP3 ENSGALG00000037050 873 0.993 - - - - - - - 0.993 - - fatty acid binding protein 3 [Source:NCBI gene;Acc:419557]
66. DCTN6 ENSGALG00000010298 7507 0.993 - - - - - - - 0.993 - - dynactin subunit 6 [Source:NCBI gene;Acc:771257]
67. TBC1D1 ENSGALG00000039380 4423 0.992 - - - - - - - 0.992 - - TBC1 domain family member 1 [Source:NCBI gene;Acc:426162]
68. C4orf46 ENSGALG00000009432 3255 0.992 - - - - - - - 0.992 - - chromosome 4 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:27320]
69. PES1 ENSGALG00000007778 12248 0.991 - - - - - - - 0.991 - - pescadillo ribosomal biogenesis factor 1 [Source:HGNC Symbol;Acc:HGNC:8848]
70. EIF1AY ENSGALG00000016410 6431 0.991 - - - - - - - 0.991 - - eukaryotic translation initiation factor 1A, Y-linked [Source:NCBI gene;Acc:418606]
71. SDHA ENSGALG00000013167 6509 0.99 - - - - - - - 0.990 - - succinate dehydrogenase complex flavoprotein subunit A [Source:NCBI gene;Acc:395758]
72. EMC7 ENSGALG00000009637 4969 0.988 - - - - - - - 0.988 - - ER membrane protein complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:24301]
73. ZEB1 ENSGALG00000007260 9277 0.986 - - - - - - - 0.986 - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
74. MYL12A ENSGALG00000014854 63033 0.985 - - - - - - 0.985 - - - myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
75. UBE2B ENSGALG00000032664 6069 0.984 - - - - - - - 0.984 - - ubiquitin conjugating enzyme E2 B [Source:HGNC Symbol;Acc:HGNC:12473]
76. TAB2 ENSGALG00000012356 3467 0.984 - - - - - - - 0.984 - - TGF-beta activated kinase 1 (MAP3K7) binding protein 2 [Source:HGNC Symbol;Acc:HGNC:17075]
77. CABIN1 ENSGALG00000006363 4415 0.983 - - - - - - - 0.983 - - calcineurin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:24187]
78. ENSGALG00000022570 ENSGALG00000022570 90374 0.981 - - - - - - 0.981 - - -
79. POLR2H ENSGALG00000008534 21521 0.976 - - - - - - - 0.976 - - RNA polymerase II subunit H [Source:NCBI gene;Acc:424954]
80. CMPK CMPK 9569 0.974 - - - - - - - 0.974 - -
81. SURF6 ENSGALG00000038413 11178 0.973 - - - - - - - 0.973 - - surfeit 6 [Source:NCBI gene;Acc:417160]
82. DEK ENSGALG00000012684 14179 0.971 - - - - - - - 0.971 - - DEK proto-oncogene [Source:NCBI gene;Acc:420828]
83. MARCKSL1 ENSGALG00000032335 88728 0.969 - - - - - - 0.969 - - - MARCKS like 1 [Source:NCBI gene;Acc:770764]
84. ACTR3 ENSGALG00000012159 16020 0.967 - - - - - - - 0.967 - - ARP3 actin related protein 3 homolog [Source:NCBI gene;Acc:374197]
85. LUC7L2 ENSGALG00000036238 11817 0.967 - - - - - - - 0.967 - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
86. SNRPD1 ENSGALG00000041334 219195 0.965 - - - - - - 0.965 - - - small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
87. PPP2R5D ENSGALG00000040005 6804 0.964 - - - - - - - 0.964 - - protein phosphatase 2 regulatory subunit B'delta [Source:HGNC Symbol;Acc:HGNC:9312]
88. DYNC1LI1 ENSGALG00000011491 11011 0.964 - - - - - - - 0.964 - - dynein cytoplasmic 1 light intermediate chain 1 [Source:NCBI gene;Acc:420668]
89. SUCLG1 ENSGALG00000015961 14323 0.962 - - - - - - - 0.962 - - succinate-CoA ligase alpha subunit [Source:NCBI gene;Acc:422932]
90. PDLIM1 ENSGALG00000005422 3385 0.956 - - - - - - - 0.956 - - PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
91. WDR61 ENSGALG00000003221 11352 0.952 - - - - - - - 0.952 - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
92. C28H19ORF10 C28H19ORF10 16529 0.944 - - - - - - - 0.944 - -
93. PUM2 ENSGALG00000016481 23625 0.943 - - - - - - - 0.943 - - pumilio RNA binding family member 2 [Source:NCBI gene;Acc:421961]
94. ARHGAP18 ENSGALG00000031843 2117 0.94 - - - - - - - 0.940 - - Rho GTPase activating protein 18 [Source:HGNC Symbol;Acc:HGNC:21035]
95. MIPEP ENSGALG00000017118 8666 0.939 - - - - - - - 0.939 - - mitochondrial intermediate peptidase [Source:HGNC Symbol;Acc:HGNC:7104]
96. PCMTD2 ENSGALG00000005901 1833 0.938 - - - - - - - 0.938 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15882]
97. POC1A ENSGALG00000034572 1572 0.938 - - - - - - - 0.938 - - POC1 centriolar protein A [Source:HGNC Symbol;Acc:HGNC:24488]
98. SPINT1 ENSGALG00000008469 5735 0.937 - - - - - - - 0.937 - - serine peptidase inhibitor, Kunitz type 1, transcript variant X2
99. XPR1 ENSGALG00000003893 5642 0.937 - - - - - - - 0.937 - - xenotropic and polytropic retrovirus receptor 1 [Source:HGNC Symbol;Acc:HGNC:12827]
100. EHMT1 ENSGALG00000033678 5720 0.936 - - - - - - - 0.936 - - euchromatic histone lysine methyltransferase 1 [Source:NCBI gene;Acc:417250]

There are 123 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA