Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VPS35

Gene Name Gene ID Reads Annotation
VPS35 ENSGALG00000004375 8059 VPS35, retromer complex component [Source:NCBI gene;Acc:415750]











Genes with expression patterns similar to VPS35

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VPS35 ENSGALG00000004375 8059 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 VPS35, retromer complex component [Source:NCBI gene;Acc:415750]
2. CPSF6 ENSGALG00000019355 7634 1.732 - - - - - - 0.844 0.888 - - cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
3. MRPS18A ENSGALG00000010296 11039 1.662 - - - - - - 0.793 0.869 - - mitochondrial ribosomal protein S18A [Source:NCBI gene;Acc:421445]
4. TCTN3 ENSGALG00000010517 3985 1.658 - - - - - - 0.751 0.907 - - tectonic family member 3 [Source:NCBI gene;Acc:100857412]
5. CDC45 ENSGALG00000001616 8432 1.644 - - - - - - 0.765 0.879 - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
6. MCTS1 ENSGALG00000008517 27514 1.63 - - - - - - 0.813 0.817 - - MCTS1, re-initiation and release factor [Source:NCBI gene;Acc:422363]
7. TLK2 ENSGALG00000000410 4690 1.623 - - 0.718 - - - - 0.905 - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
8. PRKRIP1 ENSGALG00000001833 5092 1.611 - - - - - - 0.706 0.905 - - PRKR interacting protein 1 [Source:NCBI gene;Acc:417508]
9. URB1 ENSGALG00000015887 5854 1.609 - - - - - - 0.706 0.903 - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17344]
10. MZT1 ENSGALG00000016932 9269 1.607 - - - - - - 0.750 0.857 - - mitotic spindle organizing protein 1 [Source:NCBI gene;Acc:418822]
11. SSR3 ENSGALG00000028683 24334 1.604 - - - - - - 0.773 0.831 - - signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]
12. HADH ENSGALG00000016124 18216 1.59 - - - 0.748 - - - 0.842 - - hydroxyacyl-CoA dehydrogenase [Source:NCBI gene;Acc:420290]
13. MOSPD1 ENSGALG00000006132 8503 1.573 - - - 0.716 - - 0.857 - - - motile sperm domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25235]
14. KPNA3 ENSGALG00000017009 17330 1.568 - - - - - - 0.732 0.836 - - karyopherin subunit alpha 3 [Source:NCBI gene;Acc:418870]
15. TMEM30A ENSGALG00000015904 8533 1.566 - - - - - - 0.757 0.809 - - transmembrane protein 30A [Source:NCBI gene;Acc:421861]
16. CYB5A ENSGALG00000013708 8287 1.559 - - - - - - 0.728 0.831 - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
17. WDR61 ENSGALG00000003221 11352 1.555 - - 0.728 - - - 0.827 - - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
18. RRP9 ENSGALG00000043359 9747 1.55 - - - - - - 0.783 0.767 - - ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]
19. SLC25A3 ENSGALG00000011514 62606 1.534 - - - 0.713 - - 0.821 - - - solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
20. HERC2 ENSGALG00000016739 9900 1.532 - - - 0.764 - - 0.768 - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:418682]
21. BAG5 ENSGALG00000031062 4498 1.528 - - - 0.773 - - 0.755 - - - BCL2 associated athanogene 5 [Source:NCBI gene;Acc:423482]
22. ISCU ENSGALG00000004869 6852 1.524 - - 0.763 0.761 - - - - - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
23. AHCTF1 ENSGALG00000010630 4809 1.509 - - - 0.772 - - 0.737 - - - AT-hook containing transcription factor 1 [Source:NCBI gene;Acc:421484]
24. SAAL1 ENSGALG00000026111 8340 1.499 - - 0.729 - - - - - 0.770 - serum amyloid A like 1
25. CHCHD3 ENSGALG00000006489 18592 1.492 - - - 0.774 - - 0.718 - - - coiled-coil-helix-coiled-coil-helix domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21906]
26. METTL6 ENSGALG00000040665 4467 1.491 - - 0.741 - - - 0.750 - - - methyltransferase like 6 [Source:HGNC Symbol;Acc:HGNC:28343]
27. PPFIA1 ENSGALG00000035774 5258 1.483 - - - 0.743 - - 0.740 - - - PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
28. KIAA0196 KIAA0196 4011 1.483 - - 0.758 - - - - - - 0.725
29. REXO2 ENSGALG00000035980 16319 1.481 - - - 0.725 - - 0.756 - - - RNA exonuclease 2 [Source:NCBI gene;Acc:419761]
30. IFI27L2 1365 1.469 - - 0.712 - - - - - 0.757 - interferon, alpha-inducible protein 27-like 2, transcript variant X4
31. MRPL46 ENSGALG00000006782 5033 1.468 - - 0.724 - - - 0.744 - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
32. FBXL17 ENSGALG00000000276 2443 1.467 - - 0.745 - - - 0.722 - - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
33. SRFBP1 ENSGALG00000005316 6826 1.453 - - - - 0.702 - 0.751 - - - serum response factor binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26333]
34. RTCB ENSGALG00000012611 14360 1.451 - - - - - - - 0.715 0.736 - RNA 2',3'-cyclic phosphate and 5'-OH ligase [Source:HGNC Symbol;Acc:HGNC:26935]
35. MRPS30 ENSGALG00000014874 3416 1.449 - - - 0.741 - - 0.708 - - - mitochondrial ribosomal protein S30 [Source:NCBI gene;Acc:395781]
36. CCNC ENSGALG00000015471 6497 1.444 - - 0.728 - - - 0.716 - - - cyclin C [Source:NCBI gene;Acc:421791]
37. SLC35D1 ENSGALG00000011121 4456 1.427 - - 0.718 0.709 - - - - - - solute carrier family 35 member D1 [Source:HGNC Symbol;Acc:HGNC:20800]
38. ATR ENSGALG00000002663 4626 1.421 - - - 0.713 - - 0.708 - - - ATR serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:882]
39. LYAR ENSGALG00000015000 10756 1.411 - - - 0.702 - - 0.709 - - - Ly1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]
40. AATF ENSGALG00000005420 6501 0.97 - - - - - - - 0.970 - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
41. ENSGALG00000004132 ENSGALG00000004132 9287 0.968 - - - - - - - 0.968 - -
42. STRN ENSGALG00000010580 7561 0.967 - - - - - - - 0.967 - - striatin [Source:HGNC Symbol;Acc:HGNC:11424]
43. RAE1 ENSGALG00000007653 8930 0.965 - - - - - - - 0.965 - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
44. HIBCH ENSGALG00000043307 11990 0.934 - - - - - - - 0.934 - - 3-hydroxyisobutyryl-CoA hydrolase [Source:NCBI gene;Acc:423979]
45. RBBP4 ENSGALG00000003522 72455 0.911 - - - - - - 0.911 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
46. SPTAN1 ENSGALG00000004719 20251 0.908 - - - - - - - 0.908 - - spectrin alpha, non-erythrocytic 1 [Source:NCBI gene;Acc:374234]
47. ACAD8 ENSGALG00000001557 2562 0.905 - - - - - - - 0.905 - - acyl-CoA dehydrogenase family member 8 [Source:NCBI gene;Acc:419739]
48. VATB VATB 13756 0.905 - - - - - - - 0.905 - -
49. COX20 ENSGALG00000027440 5881 0.905 - - - - - - - 0.905 - - COX20, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:421493]
50. VIMENTIN VIMENTIN 33105 0.904 - - - - - - - 0.904 - -
51. ARL4A ENSGALG00000027757 4285 0.904 - - - - - - - 0.904 - - ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
52. SLC35E1 ENSGALG00000003794 2563 0.904 - - - - - - - 0.904 - - solute carrier family 35 member E1 [Source:HGNC Symbol;Acc:HGNC:20803]
53. PDCD2 ENSGALG00000011169 3594 0.904 - - - - - - - 0.904 - - programmed cell death 2 [Source:NCBI gene;Acc:421550]
54. LZTFL1 ENSGALG00000033928 3493 0.904 - - - - - - - 0.904 - - leucine zipper transcription factor like 1 [Source:HGNC Symbol;Acc:HGNC:6741]
55. CDCA9 ENSGALG00000021225 2244 0.904 - - - - - - - 0.904 - - cell division cycle associated 9 [Source:NCBI gene;Acc:415745]
56. ITGA1 ENSGALG00000014891 11378 0.903 - - - - - - - 0.903 - - integrin subunit alpha 1 [Source:NCBI gene;Acc:395951]
57. PUM1 ENSGALG00000042598 9392 0.903 - - - - - - - 0.903 - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
58. FBN2 ENSGALG00000014686 4538 0.903 - - - - - - - 0.903 - - fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
59. EXOC4 ENSGALG00000008477 4684 0.903 - - - - - - - 0.903 - - exocyst complex component 4 [Source:NCBI gene;Acc:416700]
60. KCTD10 ENSGALG00000005138 1191 0.903 - - - - - - - 0.903 - - potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:HGNC:23236]
61. PLA2R1 ENSGALG00000011149 1964 0.903 - - - - - - - 0.903 - - phospholipase A2 receptor 1 [Source:NCBI gene;Acc:404304]
62. PPP1R21 ENSGALG00000008937 2343 0.903 - - - - - - - 0.903 - - protein phosphatase 1 regulatory subunit 21 [Source:NCBI gene;Acc:421287]
63. KIAA1598 KIAA1598 989 0.902 - - - - - - - 0.902 - -
64. SLC25A15 ENSGALG00000017032 6773 0.902 - - - - - - - 0.902 - - solute carrier family 25 member 15 [Source:NCBI gene;Acc:418886]
65. PKIB ENSGALG00000027036 1663 0.902 - - - - - - - 0.902 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:NCBI gene;Acc:769402]
66. KIAA1324L ENSGALG00000030324 1695 0.902 - - - - - - - 0.902 - - KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
67. AMOTL2 5217 0.902 - - - - - - - 0.902 - - angiomotin like 2, transcript variant X3
68. SLC2A10 ENSGALG00000004498 421 0.901 - - - - - - - 0.901 - - solute carrier family 2 member 10 [Source:HGNC Symbol;Acc:HGNC:13444]
69. PPP2R3C ENSGALG00000010052 637 0.901 - - - - - - - 0.901 - - protein phosphatase 2 regulatory subunit B''gamma [Source:HGNC Symbol;Acc:HGNC:17485]
70. KCNE3 ENSGALG00000022696 561 0.901 - - - - - - - 0.901 - - potassium voltage-gated channel subfamily E regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
71. KDELR3 ENSGALG00000032313 4376 0.9 - - - - - - - 0.900 - - KDEL endoplasmic reticulum protein retention receptor 3 [Source:NCBI gene;Acc:418026]
72. PHAX ENSGALG00000014691 8114 0.899 - - - - - - 0.899 - - - phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:427124]
73. MYO1B ENSGALG00000007712 8755 0.892 - - - - - - - 0.892 - - myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
74. SMU1 ENSGALG00000002014 8136 0.886 - - - - - - 0.886 - - - SMU1, DNA replication regulator and spliceosomal factor [Source:NCBI gene;Acc:427377]
75. DGKD ENSGALG00000001730 4456 0.884 - - - - - - - 0.884 - - diacylglycerol kinase delta [Source:HGNC Symbol;Acc:HGNC:2851]
76. CYTL1 ENSGALG00000015015 4438 0.882 - - - - - - - 0.882 - - cytokine like 1 [Source:HGNC Symbol;Acc:HGNC:24435]
77. KBTBD2 ENSGALG00000038704 2821 0.881 - - - - - - - 0.881 - - kelch repeat and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21751]
78. LEPROT ENSGALG00000011047 7132 0.878 - - - - - - 0.878 - - - leptin receptor overlapping transcript [Source:NCBI gene;Acc:424699]
79. EIF2B EIF2B 28702 0.877 - - - - - - 0.877 - - -
80. MRPL54 ENSGALG00000027611 39450 0.875 - - - - - - 0.875 - - - mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
81. UCH-L1 UCH-L1 12697 0.869 - - - - - - - 0.869 - -
82. GPATCH2 ENSGALG00000009627 4061 0.869 - - - - - - - 0.869 - - G-patch domain containing 2 [Source:NCBI gene;Acc:421355]
83. CNI CNI 18453 0.869 - - - - - - 0.869 - - -
84. IGF2BP1 ENSGALG00000041204 6420 0.869 - - - - - - - 0.869 - - insulin like growth factor 2 mRNA binding protein 1 [Source:NCBI gene;Acc:395953]
85. GLRX3 ENSGALG00000010464 22578 0.865 - - - - - - 0.865 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
86. PSMD12 ENSGALG00000026225 17473 0.865 - - - - - - 0.865 - - - proteasome 26S subunit, non-ATPase 12 [Source:NCBI gene;Acc:417425]
87. PARG ENSGALG00000002117 8702 0.864 - - - - - - 0.864 - - - poly(ADP-ribose) glycohydrolase [Source:HGNC Symbol;Acc:HGNC:8605]
88. CHMP1A ENSGALG00000006161 4195 0.86 - - - - - - - 0.860 - - charged multivesicular body protein 1A [Source:NCBI gene;Acc:415841]
89. KLF10 ENSGALG00000037913 3529 0.86 - - - - - - - 0.860 - - Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]
90. QTRTD1 QTRTD1 10765 0.855 - - - - - - 0.855 - - -
91. SBNO1 ENSGALG00000003392 6731 0.854 - - - - - - 0.854 - - - strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
92. SRSF6 ENSGALG00000000990 12424 0.854 - - - - - - 0.854 - - - serine and arginine rich splicing factor 6 [Source:NCBI gene;Acc:419116]
93. LMAN1 ENSGALG00000034821 12788 0.853 - - - - - - 0.853 - - - lectin, mannose binding 1 [Source:NCBI gene;Acc:426849]
94. TMPO ENSGALG00000011504 14454 0.852 - - - - - - 0.852 - - - thymopoietin [Source:NCBI gene;Acc:417923]
95. TOMM20 ENSGALG00000035299 23431 0.848 - - - - - - 0.848 - - - translocase of outer mitochondrial membrane 20 [Source:HGNC Symbol;Acc:HGNC:20947]
96. PDHA1 ENSGALG00000016430 7070 0.847 - - - - - - 0.847 - - - pyruvate dehydrogenase E1 alpha 1 subunit [Source:NCBI gene;Acc:418610]
97. NUMB ENSGALG00000009300 4220 0.845 - - - - - - 0.845 - - - NUMB, endocytic adaptor protein [Source:NCBI gene;Acc:395639]
98. NOC4L ENSGALG00000002272 9644 0.842 - - - - - - 0.842 - - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
99. TUBB2C TUBB2C 44249 0.839 - - - - - - 0.839 - - -
100. RAD21 ENSGALG00000029523 25658 0.838 - - - - - - 0.838 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]

There are 820 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA