Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for VPS16

Gene Name Gene ID Reads Annotation
VPS16 ENSDARG00000059902, ENSDARG00000109363 423 vacuolar protein sorting protein 16 [Source:ZFIN;Acc:ZDB-GENE-050809-9]










Genes with expression patterns similar to VPS16

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. VPS16 ENSDARG00000059902, ENSDARG00000109363 423 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vacuolar protein sorting protein 16 [Source:ZFIN;Acc:ZDB-GENE-050809-9]
2. slc25a16 ENSDARG00000057287, ENSDARG00000109352 988 1.562 - - - - - 0.748 0.814 - - solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 [Source:ZFIN;Acc:ZDB-GENE-030131-3299]
3. atf7b ENSDARG00000055481, ENSDARG00000114492, ENSDARG00000115171 2249 1.415 - 0.706 - - - - 0.709 - - activating transcription factor 7b [Source:ZFIN;Acc:ZDB-GENE-030131-3028]
4. CU041386.1 CU041386.1 126 0.915 - - - - - - 0.915 - -
5. C6H1orf159 C6H1orf159 406 0.903 - 0.903 - - - - - - -
6. g3bp2 ENSDARG00000014790 257 0.896 - 0.896 - - - - - - - GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
7. acox1 ENSDARG00000014727 660 0.885 - - - - - 0.885 - - - acyl-CoA oxidase 1, palmitoyl [Source:ZFIN;Acc:ZDB-GENE-041010-219]
8. fbxo3 ENSDARG00000029242 529 0.878 - - - - - - 0.878 - - F-box protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-269]
9. rbm34 ENSDARG00000101877 1573 0.877 - - - - - - 0.877 - - RNA binding motif protein 34 [Source:ZFIN;Acc:ZDB-GENE-040718-77]
10. tnni2a.2 ENSDARG00000005841 483 0.868 - 0.868 - - - - - - - troponin I type 2a (skeletal, fast), tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040426-970]
11. scnm1 ENSDARG00000003027 256 0.864 - - - - - - 0.864 - - sodium channel modifier 1 [Source:ZFIN;Acc:ZDB-GENE-030131-415]
12. si:rp71-68n21.11 si:rp71-68n21.11 146 0.863 - 0.863 - - - - - - -
13. rrp36 ENSDARG00000032516, ENSDARG00000109916 916 0.857 - - - - - 0.857 - - - ribosomal RNA processing 36 [Source:ZFIN;Acc:ZDB-GENE-030131-9751]
14. zgc:153157 ENSDARG00000070423, ENSDARG00000115488 79 0.857 - - - 0.857 - - - - - zgc:153157 [Source:ZFIN;Acc:ZDB-GENE-060825-224]
15. AKT3 AKT3 1729 0.846 - 0.846 - - - - - - -
16. CR383676.3 CR383676.3 2650 0.845 - - - - - - 0.845 - -
17. tmem176 ENSDARG00000078659 611 0.841 - 0.841 - - - - - - - transmembrane protein 176 [Source:ZFIN;Acc:ZDB-GENE-080902-2]
18. SHPRH ENSDARG00000075884 382 0.839 - - - 0.839 - - - - - SNF2 histone linker PHD RING helicase [Source:ZFIN;Acc:ZDB-GENE-110512-2]
19. brms1 ENSDARG00000051955 900 0.838 - - - - - - 0.838 - - BRMS1, transcriptional repressor and anoikis regulator [Source:ZFIN;Acc:ZDB-GENE-030616-596]
20. ppcs ENSDARG00000061889 224 0.837 - 0.837 - - - - - - - phosphopantothenoylcysteine synthetase [Source:ZFIN;Acc:ZDB-GENE-060512-104]
21. CLSPN 2054 0.835 - 0.835 - - - - - - - claspin
22. pif1 ENSDARG00000020289 216 0.835 - - - - - - 0.835 - - PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
23. dkk3b ENSDARG00000070683 209 0.835 - - - - - - 0.835 - - dickkopf WNT signaling pathway inhibitor 3b [Source:ZFIN;Acc:ZDB-GENE-061207-74]
24. atf7a ENSDARG00000011298 703 0.833 - - - - - - 0.833 - - activating transcription factor 7a [Source:ZFIN;Acc:ZDB-GENE-050721-2]
25. trmt10c ENSDARG00000041575 447 0.833 - - - - - - 0.833 - - tRNA methyltransferase 10C, mitochondrial RNase P subunit [Source:ZFIN;Acc:ZDB-GENE-041114-12]
26. tmem194b tmem194b 724 0.829 - - - - - - 0.829 - -
27. mrps22 ENSDARG00000018073, ENSDARG00000115927 177 0.829 - - - - - 0.829 - - - mitochondrial ribosomal protein S22 [Source:ZFIN;Acc:ZDB-GENE-070615-31]
28. tyw5 ENSDARG00000069672, ENSDARG00000110022 255 0.828 - - - - - - 0.828 - - tRNA-yW synthesizing protein 5 [Source:ZFIN;Acc:ZDB-GENE-060929-894]
29. atraid ENSDARG00000043388 648 0.826 - - - - - - 0.826 - - all-trans retinoic acid-induced differentiation factor [Source:ZFIN;Acc:ZDB-GENE-040724-177]
30. bcl7bb ENSDARG00000040396, ENSDARG00000116093 764 0.825 - - - - - - 0.825 - - BCL tumor suppressor 7Bb [Source:ZFIN;Acc:ZDB-GENE-010328-17]
31. rpap1 ENSDARG00000075072, ENSDARG00000117161 250 0.824 - - - - - - 0.824 - - RNA polymerase II associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-090914-1]
32. plekhf2 ENSDARG00000021141 529 0.824 - - - 0.824 - - - - - pleckstrin homology domain containing, family F (with FYVE domain) member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-884]
33. thtpa ENSDARG00000063049 286 0.824 - 0.824 - - - - - - - thiamine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-070502-2]
34. siva1 ENSDARG00000114552 624 0.821 - - - - - - 0.821 - - SIVA1, apoptosis-inducing factor [Source:ZFIN;Acc:ZDB-GENE-050506-57]
35. gmeb1 ENSDARG00000062060 456 0.821 - - - 0.821 - - - - - glucocorticoid modulatory element binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-35]
36. zgc:77391 zgc:77391 1445 0.819 - 0.819 - - - - - - -
37. pdcd4b ENSDARG00000041022, ENSDARG00000111385, ENSDARG00000112429 528 0.818 - 0.818 - - - - - - - programmed cell death 4b [Source:ZFIN;Acc:ZDB-GENE-030131-9847]
38. clpp ENSDARG00000020679 2125 0.816 - - - - - - 0.816 - - caseinolytic mitochondrial matrix peptidase proteolytic subunit [Source:ZFIN;Acc:ZDB-GENE-030131-7860]
39. slc35b2 ENSDARG00000007886 310 0.815 - - - - - - 0.815 - - solute carrier family 35 (adenosine 3'-phospho 5'-phosphosulfate transporter), member B2 [Source:ZFIN;Acc:ZDB-GENE-050213-1]
40. tuft1a ENSDARG00000061242, ENSDARG00000115368 330 0.815 - 0.815 - - - - - - - tuftelin 1a [Source:ZFIN;Acc:ZDB-GENE-061103-184]
41. rbm19 ENSDARG00000042590, ENSDARG00000112734 542 0.814 - - - - - - 0.814 - - RNA binding motif protein 19 [Source:ZFIN;Acc:ZDB-GENE-031125-3]
42. CABZ01008011.1 CABZ01008011.1 761 0.813 - - - - - - 0.813 - -
43. tll1 ENSDARG00000037429, ENSDARG00000113847 1039 0.813 - 0.813 - - - - - - - tolloid-like 1 [Source:ZFIN;Acc:ZDB-GENE-041020-1]
44. polr2c ENSDARG00000033596, ENSDARG00000111144, ENSDARG00000113715 1388 0.812 - - - - - - 0.812 - - polymerase (RNA) II (DNA directed) polypeptide C [Source:ZFIN;Acc:ZDB-GENE-030131-6609]
45. METTL12 METTL12 415 0.811 - - - - - 0.811 - - -
46. zc2hc1a ENSDARG00000027915, ENSDARG00000112745 974 0.811 - - - - - - 0.811 - - zinc finger, C2HC-type containing 1A [Source:ZFIN;Acc:ZDB-GENE-030131-3132]
47. snip1_1 ENSDARG00000087528 111 0.809 - - - - - - 0.809 - - Smad nuclear interacting protein [Source:ZFIN;Acc:ZDB-GENE-041026-3]
48. dctn5 ENSDARG00000003573 1100 0.807 - 0.807 - - - - - - - dynactin 5 [Source:ZFIN;Acc:ZDB-GENE-040718-201]
49. fam131a ENSDARG00000077022 445 0.807 0.807 - - - - - - - - family with sequence similarity 131, member A [Source:ZFIN;Acc:ZDB-GENE-080204-112]
50. socs9 ENSDARG00000101985 44 0.806 - 0.806 - - - - - - - suppressor of cytokine signaling 9 [Source:ZFIN;Acc:ZDB-GENE-030131-4065]
51. RBBP8NL RBBP8NL 813 0.805 - 0.805 - - - - - - -
52. RLIM ENSDARG00000079306 514 0.804 - - - - - - 0.804 - - ring finger protein, LIM domain interacting [Source:ZFIN;Acc:ZDB-GENE-120809-2]
53. pigo ENSDARG00000011743 928 0.803 - - - - - 0.803 - - - phosphatidylinositol glycan anchor biosynthesis, class O [Source:ZFIN;Acc:ZDB-GENE-091204-80]
54. ugt2b6 ugt2b6 111 0.803 - - - - - 0.803 - - -
55. pogza ENSDARG00000054778 1495 0.803 - - - - - - 0.803 - - pogo transposable element derived with ZNF domain a [Source:ZFIN;Acc:ZDB-GENE-040914-76]
56. usp25 ENSDARG00000012314 734 0.801 - - - - - - 0.801 - - ubiquitin specific peptidase 25 [Source:ZFIN;Acc:ZDB-GENE-040426-2847]
57. sephs1 ENSDARG00000058292 3347 0.8 - - - - - - 0.800 - - selenophosphate synthetase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3670]
58. st6galnac1.1 ENSDARG00000043814 95 0.8 - - - - - - 0.800 - - ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-041014-160]
59. ERICH2 ENSDARG00000107534 160 0.799 - - - - - 0.799 - - - glutamate-rich 2 [Source:ZFIN;Acc:ZDB-GENE-131231-2]
60. ankrd6b ENSDARG00000029370 429 0.797 - 0.797 - - - - - - - ankyrin repeat domain 6b [Source:ZFIN;Acc:ZDB-GENE-030916-4]
61. C18H19orf12 C18H19orf12 432 0.797 - - - - - 0.797 - - -
62. C1H4orf27 C1H4orf27 1961 0.797 - - - - - 0.797 - - -
63. CPLX1 CPLX1 386 0.796 - 0.796 - - - - - - -
64. mao ENSDARG00000023712 1448 0.794 - - - - - - 0.794 - - monoamine oxidase [Source:ZFIN;Acc:ZDB-GENE-040329-3]
65. slc38a10 ENSDARG00000077081 1691 0.793 - - - - - - 0.793 - - solute carrier family 38, member 10 [Source:ZFIN;Acc:ZDB-GENE-050309-21]
66. depdc5 ENSDARG00000078105 745 0.793 - 0.793 - - - - - - - DEP domain containing 5 [Source:ZFIN;Acc:ZDB-GENE-091204-356]
67. zgc:163061 ENSDARG00000075538, ENSDARG00000076766 54 0.792 - 0.792 - - - - - - - zgc:163061 [Source:ZFIN;Acc:ZDB-GENE-070410-132]
68. ELOVL4 ELOVL4 3026 0.792 - - - 0.792 - - - - -
69. galnt2 ENSDARG00000003829 891 0.792 - 0.792 - - - - - - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 [Source:ZFIN;Acc:ZDB-GENE-041111-110]
70. ddx39b ENSDARG00000036069 1151 0.79 - - - - - 0.790 - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:ZFIN;Acc:ZDB-GENE-040426-1259]
71. si:dkeyp-4f2.5 si:dkeyp-4f2.5 232 0.789 - - - - - - 0.789 - -
72. ngf ngf 278 0.789 - 0.789 - - - - - - -
73. RNASEH2C ENSDARG00000089637 1673 0.788 - - - - - 0.788 - - - ribonuclease H2, subunit C [Source:ZFIN;Acc:ZDB-GENE-030131-2469]
74. HECW1 HECW1 1531 0.787 - - - 0.787 - - - - -
75. ing5b ENSDARG00000068175 2502 0.787 - - - - - - 0.787 - - inhibitor of growth family, member 5b [Source:ZFIN;Acc:ZDB-GENE-030616-462]
76. wbp11 ENSDARG00000099151, ENSDARG00000101411 567 0.787 - - - - - 0.787 - - - WW domain binding protein 11 [Source:ZFIN;Acc:ZDB-GENE-040426-1829]
77. gins1 ENSDARG00000007624 1421 0.787 - - - - - 0.787 - - - GINS complex subunit 1 (Psf1 homolog) [Source:ZFIN;Acc:ZDB-GENE-041010-184]
78. reep3l reep3l 608 0.787 - - - - - 0.787 - - -
79. tab1 ENSDARG00000036613 445 0.786 - - - - - - 0.786 - - TGF-beta activated kinase 1/MAP3K7 binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-060628-1]
80. itgb6 ENSDARG00000002494 559 0.784 - - - 0.784 - - - - - integrin, beta 6 [Source:ZFIN;Acc:ZDB-GENE-100812-2]
81. ERMP1_1 ERMP1_1 616 0.783 - - - - - 0.783 - - -
82. dnajb1a ENSDARG00000099383 871 0.783 - - - - - 0.783 - - - DnaJ (Hsp40) homolog, subfamily B, member 1a [Source:ZFIN;Acc:ZDB-GENE-040801-90]
83. eif2ak2 ENSDARG00000068729 184 0.783 - - - - - - 0.783 - - eukaryotic translation initiation factor 2-alpha kinase 2 [Source:ZFIN;Acc:ZDB-GENE-080422-1]
84. CABZ01049362.1 ENSDARG00000099508 570 0.779 - 0.779 - - - - - - -
85. DIDO1 ENSDARG00000057940 312 0.779 - - - - - - 0.779 - - death inducer-obliterator 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6117]
86. rps6ka3b ENSDARG00000057927, ENSDARG00000109970 812 0.778 - - - 0.778 - - - - - ribosomal protein S6 kinase, polypeptide 3b [Source:ZFIN;Acc:ZDB-GENE-070209-74]
87. fgd6 ENSDARG00000045528 224 0.778 - - - - - 0.778 - - - FYVE, RhoGEF and PH domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-041210-200]
88. fam63a 381 0.778 - - - - - 0.778 - - - family with sequence similarity 63, member A, transcript variant X1
89. cald1 cald1 147 0.778 - 0.778 - - - - - - -
90. ca10a ENSDARG00000052644 216 0.776 - - - - - 0.776 - - - carbonic anhydrase Xa [Source:ZFIN;Acc:ZDB-GENE-051030-123]
91. PHTF2 ENSDARG00000102123, ENSDARG00000114503 898 0.776 - - - - - - 0.776 - - putative homeodomain transcription factor 2 [Source:ZFIN;Acc:ZDB-GENE-040711-4]
92. msto1 ENSDARG00000024381 298 0.776 - - - - - 0.776 - - - misato 1, mitochondrial distribution and morphology regulator [Source:ZFIN;Acc:ZDB-GENE-030131-6238]
93. edem2 ENSDARG00000028448 236 0.775 - - - - - 0.775 - - - ER degradation enhancer, mannosidase alpha-like 2 [Source:ZFIN;Acc:ZDB-GENE-060519-1]
94. PARM1 ENSDARG00000114063 58 0.775 - 0.775 - - - - - - - prostate androgen-regulated mucin-like protein 1 [Source:ZFIN;Acc:ZDB-GENE-140106-262]
95. zgc:158320 ENSDARG00000099373 161 0.775 - - - - - - 0.775 - - zgc:158320 [Source:ZFIN;Acc:ZDB-GENE-061201-33]
96. si:dkey-238o14.9 si:dkey-238o14.9 303 0.775 - - - 0.775 - - - - -
97. hmbsb ENSDARG00000055991 3037 0.775 - - - - - 0.775 - - - hydroxymethylbilane synthase, b [Source:ZFIN;Acc:ZDB-GENE-050522-491]
98. tom1l2 ENSDARG00000009217, ENSDARG00000111492 1639 0.775 - - - - - - 0.775 - - target of myb1 like 2 membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-061013-3]
99. zgc:111974 zgc:111974 1386 0.774 - - - - - 0.774 - - -
100. prc1b ENSDARG00000005993 780 0.774 - - - 0.774 - - - - - protein regulator of cytokinesis 1b [Source:ZFIN;Acc:ZDB-GENE-040426-777]

There are 312 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA