Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VPS13D

Gene Name Gene ID Reads Annotation
VPS13D ENSGALG00000034777 2350 vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]











Genes with expression patterns similar to VPS13D

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VPS13D ENSGALG00000034777 2350 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
2. ARID2 ENSGALG00000033074 3461 2.427 - - 0.836 - - - 0.770 0.821 - - AT-rich interaction domain 2 [Source:HGNC Symbol;Acc:HGNC:18037]
3. UBN1 ENSGALG00000031416 2848 1.858 - - 0.900 - - - - 0.958 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
4. HYAL1 ENSGALG00000000785 1778 1.778 - - 0.867 - - - - 0.911 - - hyaluronoglucosaminidase 1, transcript variant X3
5. TCTN2 ENSGALG00000023683 3596 1.774 - - 0.920 - - - - 0.854 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
6. PCYOX1 ENSGALG00000013878 2200 1.772 - - 0.885 - - - - 0.887 - - prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
7. NT5C3B ENSGALG00000003651 5190 1.731 - - 0.823 - - - - 0.908 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
8. AGGF1 ENSGALG00000004311 3011 1.695 - - 0.794 - - - - 0.901 - - angiogenic factor with G-patch and FHA domains 1, transcript variant X1
9. CPT2 ENSGALG00000010681 3211 1.679 - - 0.763 - - - - 0.916 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
10. CAMSAP1 ENSGALG00000001692 2617 1.673 - - 0.858 - - - - 0.815 - - calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
11. PRPF40A ENSGALG00000012526 7724 1.643 - - 0.858 - - - - 0.785 - - pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
12. NPAT ENSGALG00000017162 1574 1.643 - - - - - - 0.704 0.939 - - nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896]
13. TAF5 ENSGALG00000008241 5227 1.641 - - 0.760 - - - - 0.881 - - TATA-box binding protein associated factor 5 [Source:NCBI gene;Acc:423872]
14. NR2C1 ENSGALG00000011327 5109 1.64 - - 0.862 - - - 0.778 - - - nuclear receptor subfamily 2, group C, member 1 [Source:NCBI gene;Acc:373913]
15. ENTPD4 ENSGALG00000000390 1394 1.634 - - - - - - 0.734 0.900 - - ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]
16. ATP6V0A2 ENSGALG00000003194 4824 1.608 - - 0.834 - - - - 0.774 - - ATPase H+ transporting V0 subunit a2 [Source:NCBI gene;Acc:395473]
17. DNTTIP1 ENSGALG00000003575 4687 1.572 - - 0.857 - - - 0.715 - - - deoxynucleotidyltransferase terminal interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:16160]
18. SUCLG2 ENSGALG00000007652 9688 1.553 - - 0.812 - - - 0.741 - - - succinate-CoA ligase GDP-forming beta subunit [Source:NCBI gene;Acc:416087]
19. PDLIM7 ENSGALG00000026159 4700 1.547 - - 0.747 - - - - 0.800 - - PDZ and LIM domain 7 [Source:NCBI gene;Acc:416362]
20. STAU1 ENSGALG00000004736 3828 1.534 - - 0.813 - - - 0.721 - - - staufen double-stranded RNA binding protein 1 [Source:NCBI gene;Acc:419213]
21. SPDL1 ENSGALG00000001942 4403 1.526 - - 0.826 - - - 0.700 - - - spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
22. DMTF1 ENSGALG00000030844 3584 1.512 - - 0.734 - - - 0.778 - - - cyclin D binding myb like transcription factor 1 [Source:NCBI gene;Acc:418646]
23. SPTLC1 ENSGALG00000013493 3918 1.496 - - 0.751 - - - 0.745 - - - serine palmitoyltransferase long chain base subunit 1 [Source:HGNC Symbol;Acc:HGNC:11277]
24. WDR3 ENSGALG00000014791 5856 1.454 - - 0.714 - - - 0.740 - - - WD repeat domain 3 [Source:NCBI gene;Acc:427952]
25. UBE3A ENSGALG00000034944 5196 1.452 - - 0.717 - - - 0.735 - - - ubiquitin protein ligase E3A [Source:HGNC Symbol;Acc:HGNC:12496]
26. SOBP ENSGALG00000043047 147 0.947 - - 0.947 - - - - - - - sine oculis binding protein homolog [Source:NCBI gene;Acc:421775]
27. AKT3 ENSGALG00000034081 866 0.945 - - 0.945 - - - - - - - AKT serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:393]
28. PKN3 532 0.941 - - - - - - - 0.941 - - protein kinase N3, transcript variant X2
29. BACE2 ENSGALG00000034932 1570 0.941 - - - - - - - 0.941 - - beta-secretase 2 [Source:HGNC Symbol;Acc:HGNC:934]
30. TMEM161A ENSGALG00000025809 2813 0.94 - - - - - - - 0.940 - - transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
31. ZBTB18 ENSGALG00000010705 3433 0.938 - - - - - - - 0.938 - - zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
32. QSER1 ENSGALG00000012030 4490 0.938 - - 0.938 - - - - - - - glutamine and serine rich 1 [Source:NCBI gene;Acc:421599]
33. GKAP1 ENSGALG00000012586 2908 0.935 - - - - - - - 0.935 - - G kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:17496]
34. ATP10D ENSGALG00000014192 94 0.933 - - 0.933 - - - - - - - ATPase phospholipid transporting 10D (putative) [Source:HGNC Symbol;Acc:HGNC:13549]
35. IFT81 ENSGALG00000003854 2534 0.932 - - 0.932 - - - - - - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
36. ATF7IP ENSGALG00000011814 1571 0.932 - - 0.932 - - - - - - - activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
37. HAGHL ENSGALG00000021040 1568 0.932 - - - - - - - 0.932 - - hydroxyacylglutathione hydrolase-like [Source:NCBI gene;Acc:416536]
38. GFER ENSGALG00000005579 1367 0.931 - - 0.931 - - - - - - - growth factor, augmenter of liver regeneration [Source:HGNC Symbol;Acc:HGNC:4236]
39. SNN ENSGALG00000028876 1687 0.93 - - 0.930 - - - - - - - stannin [Source:NCBI gene;Acc:416429]
40. RALGDS ENSGALG00000003412 4478 0.929 - - 0.929 - - - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
41. SHMT1 ENSGALG00000005046 1430 0.929 - - 0.929 - - - - - - - serine hydroxymethyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10850]
42. SPATA2 ENSGALG00000008026 2040 0.929 - - - - - - - 0.929 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
43. AIP ENSGALG00000040247 4166 0.929 - - - - - - - 0.929 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
44. APTX ENSGALG00000001954 692 0.928 - - 0.928 - - - - - - - aprataxin [Source:NCBI gene;Acc:395173]
45. CHAMP1 ENSGALG00000016813 508 0.928 - - 0.928 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
46. TXNDC11 ENSGALG00000003154 2224 0.927 - - - - - - - 0.927 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
47. CLCN5 ENSGALG00000007234 1143 0.927 - - - - - - - 0.927 - - chloride voltage-gated channel 5 [Source:HGNC Symbol;Acc:HGNC:2023]
48. AGRN ENSGALG00000039193 8135 0.927 - - - - - - - 0.927 - - agrin [Source:NCBI gene;Acc:396538]
49. SELENBP1 ENSGALG00000000866 1253 0.927 - - - - - - - 0.927 - - selenium binding protein 1 [Source:NCBI gene;Acc:425664]
50. NUDT6 ENSGALG00000011834 1309 0.926 - - - - - - - 0.926 - - nudix hydrolase 6 [Source:HGNC Symbol;Acc:HGNC:8053]
51. SLC19A1 ENSGALG00000030511 1397 0.926 - - - - - - - 0.926 - - solute carrier family 19 member 1 [Source:NCBI gene;Acc:424034]
52. LRIG3 ENSGALG00000009755 6655 0.926 - - - - - - - 0.926 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
53. KIF21B ENSGALG00000034347 4144 0.925 - - - - - - - 0.925 - - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
54. APBB2 ENSGALG00000014262 569 0.925 - - - - - - - 0.925 - - amyloid beta precursor protein binding family B member 2 [Source:HGNC Symbol;Acc:HGNC:582]
55. GTF2H2 ENSGALG00000002399 2361 0.923 - - 0.923 - - - - - - - general transcription factor IIH subunit 2, transcript variant X2
56. KIAA1009 KIAA1009 1261 0.923 - - - - - - - 0.923 - -
57. ZNF750 ENSGALG00000001518 151 0.922 - - - - - - - 0.922 - - zinc finger protein 750 [Source:HGNC Symbol;Acc:HGNC:25843]
58. MTHFSD ENSGALG00000033322 824 0.922 - - 0.922 - - - - - - - methenyltetrahydrofolate synthetase domain containing [Source:HGNC Symbol;Acc:HGNC:25778]
59. SLC3A1 ENSGALG00000009973 608 0.921 - - 0.921 - - - - - - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
60. FBXL5 ENSGALG00000014510 245 0.921 - - 0.921 - - - - - - - F-box and leucine rich repeat protein 5 [Source:HGNC Symbol;Acc:HGNC:13602]
61. U4 U4 69 0.921 - - 0.921 - - - - - - -
62. ITGB4 ENSGALG00000002389 44 0.92 - - 0.920 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
63. ENSGALG00000004703 ENSGALG00000004703 112 0.92 - - 0.920 - - - - - - -
64. TMEM242 ENSGALG00000013689 377 0.92 - - 0.920 - - - - - - - transmembrane protein 242 [Source:HGNC Symbol;Acc:HGNC:17206]
65. TDRD6 48 0.92 - - 0.920 - - - - - - - tudor domain containing 6
66. OSGIN2 ENSGALG00000042840 83 0.92 - - 0.920 - - - - - - - oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]
67. ENSGALG00000028964 ENSGALG00000028964 46 0.92 - - 0.920 - - - - - - -
68. ENSGALG00000020103 ENSGALG00000020103 64 0.92 - - 0.920 - - - - - - -
69. MRC2 ENSGALG00000000461 48 0.92 - - 0.920 - - - - - - - mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
70. PCYT1B 190 0.92 - - 0.920 - - - - - - - phosphate cytidylyltransferase 1, choline, beta, transcript variant X4
71. ITM2B ENSGALG00000016996 1112 0.919 - - 0.919 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
72. ENSGALG00000021439 ENSGALG00000021439 628 0.919 - - - - - - - 0.919 - -
73. RQCD1 RQCD1 110 0.919 - - 0.919 - - - - - - -
74. ENSGALG00000002020 ENSGALG00000002020 183 0.919 - - 0.919 - - - - - - -
75. NXPE3 ENSGALG00000015344 111 0.919 - - 0.919 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
76. RECQL ENSGALG00000013174 1323 0.919 - - 0.919 - - - - - - - RecQ like helicase [Source:NCBI gene;Acc:378910]
77. ARNTL2 ENSGALG00000014096 998 0.919 - - - - - - - 0.919 - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:NCBI gene;Acc:373925]
78. ABCC3 ENSGALG00000007522 340 0.918 - - 0.918 - - - - - - - ATP binding cassette subfamily C member 3, transcript variant X5
79. RTFDC1 ENSGALG00000007709 1727 0.918 - - 0.918 - - - - - - - replication termination factor 2 domain containing 1 [Source:NCBI gene;Acc:419329]
80. NPL ENSGALG00000004614 617 0.918 - - - - - - - 0.918 - - N-acetylneuraminate pyruvate lyase [Source:NCBI gene;Acc:429074]
81. SMG8 ENSGALG00000005093 5557 0.918 - - - - - - - 0.918 - - SMG8 nonsense mediated mRNA decay factor
82. UEVLD ENSGALG00000006342 164 0.918 - - 0.918 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
83. SZT2 ENSGALG00000028561 255 0.918 - - 0.918 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
84. CDC14B ENSGALG00000012627 110 0.918 - - 0.918 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
85. PTDSS2 ENSGALG00000004300 682 0.918 - - 0.918 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
86. FBXL17 ENSGALG00000000276 2443 0.918 - - - - - - - 0.918 - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
87. BRCA1 ENSGALG00000002781 2052 0.918 - - - - - - - 0.918 - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
88. AKAP10 ENSGALG00000004679 103 0.918 - - 0.918 - - - - - - - A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
89. MED12 ENSGALG00000036322 814 0.917 - - 0.917 - - - - - - - mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
90. BBX ENSGALG00000015353 1281 0.917 - - 0.917 - - - - - - - BBX, HMG-box containing [Source:HGNC Symbol;Acc:HGNC:14422]
91. LRRC42 ENSGALG00000010743 384 0.917 - - 0.917 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
92. WHSC1 1712 0.917 - - 0.917 - - - - - - - Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
93. CLEC16A ENSGALG00000007167 66 0.917 - - 0.917 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
94. PDZD8 ENSGALG00000029095 1068 0.916 - - - - - - - 0.916 - - PDZ domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26974]
95. RCAN3 ENSGALG00000004282 7778 0.916 - - - - - - - 0.916 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
96. GDPD4 ENSGALG00000000690 824 0.916 - - 0.916 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
97. DBN1 ENSGALG00000033405 216 0.916 - - 0.916 - - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
98. SLK ENSGALG00000008318 2220 0.915 - - 0.915 - - - - - - - STE20 like kinase [Source:HGNC Symbol;Acc:HGNC:11088]
99. TAF1A ENSGALG00000009441 2431 0.915 - - - - - - - 0.915 - - TATA-box binding protein associated factor, RNA polymerase I subunit A [Source:NCBI gene;Acc:421338]
100. NCAPH ENSGALG00000032270 2103 0.915 - - - - - - - 0.915 - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]

There are 668 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA