Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for VMP1

Gene Name Gene ID Reads Annotation
VMP1 ENSGALG00000005160 12859 vacuole membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29559]











Genes with expression patterns similar to VMP1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VMP1 ENSGALG00000005160 12859 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 vacuole membrane protein 1 [Source:HGNC Symbol;Acc:HGNC:29559]
2. NARS ENSGALG00000040506 9506 1.816 - - - - 0.904 - 0.912 - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
3. MINOS1 ENSGALG00000004039 37740 1.776 - - - - 0.889 - 0.887 - - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
4. PSMG3 ENSGALG00000004203 11240 1.749 - - - - 0.896 - 0.853 - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
5. TM9SF3 ENSGALG00000005534 15290 1.74 - - - - 0.902 - 0.838 - - - transmembrane 9 superfamily member 3
6. ENSGALG00000027854 ENSGALG00000027854 5007 1.736 - - - - 0.906 - 0.830 - - -
7. STK4 ENSGALG00000004098 11366 1.695 - - - - 0.861 - 0.834 - - - serine/threonine kinase 4 [Source:NCBI gene;Acc:419187]
8. YBX1 ENSGALG00000004848 20992 1.68 - - - - 0.884 - 0.796 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
9. TOP2B ENSGALG00000011300 25048 1.58 - - - - 0.800 - 0.780 - - - DNA topoisomerase 2-beta [Source:NCBI gene;Acc:395966]
10. COL4A1 ENSGALG00000036798 12749 1.54 - - - - 0.760 - 0.780 - - - collagen type IV alpha 1 chain [Source:NCBI gene;Acc:395530]
11. TCP1 ENSGALG00000011637 73216 0.934 - - - - - - 0.934 - - - t-complex 1 [Source:NCBI gene;Acc:421586]
12. ARL6IP5 ENSGALG00000038904 12956 0.929 - - - - - - 0.929 - - - ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
13. NDUFS6 ENSGALG00000013191 15874 0.925 - - - - - - 0.925 - - - NADH:ubiquinone oxidoreductase subunit S6 [Source:HGNC Symbol;Acc:HGNC:7713]
14. MRPL19 ENSGALG00000016731 22670 0.923 - - - - - - 0.923 - - - mitochondrial ribosomal protein L19, transcript variant X1
15. NDUFS4 ENSGALG00000028026 25876 0.919 - - - - 0.919 - - - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
16. MARC1 ENSGALG00000009453 5675 0.916 - - - - 0.916 - - - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
17. PRCC ENSGALG00000040696 9346 0.916 - - - - 0.916 - - - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
18. UBE2D3 ENSGALG00000012311 39831 0.915 - - - - 0.915 - - - - - ubiquitin conjugating enzyme E2 D3 [Source:NCBI gene;Acc:422713]
19. LZIC ENSGALG00000002616 9052 0.915 - - - - 0.915 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
20. ZYX ENSGALG00000014688 8686 0.915 - - - - 0.915 - - - - - zyxin [Source:NCBI gene;Acc:418300]
21. DGKZ ENSGALG00000008380 5389 0.914 - - - - 0.914 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
22. EDNRA ENSGALG00000010013 2472 0.913 - - - - 0.913 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
23. TIMMDC1 ENSGALG00000024480 9337 0.912 - - - - 0.912 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
24. IARS2 ENSGALG00000009566 4599 0.912 - - - - 0.912 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
25. SYNE1 ENSGALG00000013505 2324 0.911 - - - - 0.911 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
26. STARD3NL ENSGALG00000033038 4851 0.911 - - - - 0.911 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
27. HARS ENSGALG00000035080 11602 0.911 - - - - 0.911 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
28. NEK6 ENSGALG00000001118 20333 0.911 - - - - 0.911 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
29. ETS1 ENSGALG00000001143 7284 0.91 - - - - 0.910 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
30. TAF3 ENSGALG00000006731 15569 0.91 - - - - 0.910 - - - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
31. FNDC5 ENSGALG00000003567 3328 0.909 - - - - 0.909 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
32. DENR ENSGALG00000003795 30805 0.909 - - - - 0.909 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
33. ZC3H6 ENSGALG00000008269 10353 0.909 - - - - 0.909 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
34. WDR92 ENSGALG00000008760 3934 0.908 - - - - 0.908 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
35. SEPHS1 ENSGALG00000014575 10701 0.908 - - - - 0.908 - - - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
36. DDOST ENSGALG00000010073 18707 0.908 - - - - 0.908 - - - - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [Source:NCBI gene;Acc:425542]
37. PSMD3 ENSGALG00000033162 25615 0.908 - - - - 0.908 - - - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
38. NDUFB10 ENSGALG00000005465 41984 0.907 - - - - - - 0.907 - - - NADH:ubiquinone oxidoreductase subunit B10 [Source:HGNC Symbol;Acc:HGNC:7696]
39. BRF1 ENSGALG00000011705 3406 0.906 - - - - 0.906 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
40. LMAN2 ENSGALG00000033232 11740 0.905 - - - - 0.905 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
41. SAP30 ENSGALG00000036252 2032 0.905 - - - - 0.905 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
42. C9orf85 ENSGALG00000026001 4110 0.905 - - - - 0.905 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
43. UTP6 ENSGALG00000003260 4909 0.904 - - - - 0.904 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
44. VMA21 ENSGALG00000009065 6432 0.904 - - - - 0.904 - - - - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
45. PITHD1 ENSGALG00000003986 11470 0.903 - - - - 0.903 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
46. NUP88 ENSGALG00000032280 9847 0.903 - - - - 0.903 - - - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
47. DLD ENSGALG00000007931 11011 0.903 - - - - 0.903 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
48. SLC30A4 ENSGALG00000005703 5696 0.903 - - - - 0.903 - - - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
49. PRDM4 ENSGALG00000012619 876 0.903 - - - - 0.903 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
50. MYBL2 ENSGALG00000003503 15875 0.903 - - - - 0.903 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
51. SPRED1 ENSGALG00000028203 6520 0.902 - - - - 0.902 - - - - - sprouty related EVH1 domain containing 1 [Source:NCBI gene;Acc:423292]
52. PTK2B ENSGALG00000016564 406 0.902 - - - - 0.902 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
53. LGALS1 ENSGALG00000012420 13993 0.902 - - - - 0.902 - - - - - galectin 1 [Source:NCBI gene;Acc:396491]
54. PRKCI ENSGALG00000009364 11574 0.902 - - - - 0.902 - - - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
55. MED8 ENSGALG00000009993 3095 0.902 - - - - 0.902 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
56. RAMP3 ENSGALG00000037246 1187 0.902 - - - - 0.902 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
57. MRPL21 ENSGALG00000004362 20796 0.902 - - - - 0.902 - - - - - mitochondrial ribosomal protein L21 [Source:NCBI gene;Acc:423000]
58. COMMD2 ENSGALG00000028001 18981 0.901 - - - - 0.901 - - - - - COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]
59. NDUFV1 ENSGALG00000042809 6222 0.901 - - - - 0.901 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
60. ENSGALG00000006569 ENSGALG00000006569 2169 0.901 - - - - 0.901 - - - - -
61. PREP2 PREP2 238 0.901 - - - - 0.901 - - - - -
62. TMF1 ENSGALG00000013408 3344 0.901 - - - - 0.901 - - - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
63. LOC426385 ENSGALG00000026301 2703 0.901 - - - - 0.901 - - - - - serine/threonine kinase 35-like, transcript variant X2
64. SMG7 ENSGALG00000004667 707 0.901 - - - - 0.901 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
65. PHTF1 ENSGALG00000001845 3276 0.9 - - - - 0.900 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
66. PSMC1 ENSGALG00000010675 20633 0.9 - - - - 0.900 - - - - - proteasome 26S subunit, ATPase 1 [Source:NCBI gene;Acc:395804]
67. ASAP2 ENSGALG00000016419 1393 0.9 - - - - 0.900 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
68. ANKRD9 ENSGALG00000011376 525 0.9 - - - - 0.900 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
69. FUNDC2 ENSGALG00000029585 9334 0.9 - - - - 0.900 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
70. KIF11 ENSGALG00000030597 5528 0.9 - - - - 0.900 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
71. RBM34 ENSGALG00000029915 5618 0.9 - - - - 0.900 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
72. MYO9A ENSGALG00000033618 4505 0.899 - - - - 0.899 - - - - - myosin IXA, transcript variant X10
73. COQ5 ENSGALG00000007185 5614 0.899 - - - - 0.899 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
74. YARS ENSGALG00000003563 11093 0.899 - - - - 0.899 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
75. GTF2H1 ENSGALG00000042340 1553 0.898 - - - - 0.898 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
76. SDCBP ENSGALG00000015436 1228 0.898 - - - - 0.898 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
77. RBM6 ENSGALG00000035578 1690 0.898 - - - - 0.898 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
78. CENPP ENSGALG00000004687 6707 0.898 - - - - 0.898 - - - - - centromere protein P [Source:NCBI gene;Acc:415952]
79. KIF20A ENSGALG00000035030 10249 0.898 - - - - - - 0.898 - - - kinesin family member 20A [Source:NCBI gene;Acc:416220]
80. MEF2BNB MEF2BNB 5578 0.897 - - - - 0.897 - - - - -
81. MED21 ENSGALG00000027435 5766 0.897 - - - - 0.897 - - - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
82. KIF2A ENSGALG00000014737 16391 0.897 - - - - 0.897 - - - - - kinesin heavy chain member 2A [Source:NCBI gene;Acc:427156]
83. HSF2 ENSGALG00000038420 5259 0.897 - - - - 0.897 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
84. MCM4 ENSGALG00000012915 13151 0.896 - - - - - - 0.896 - - - minichromosome maintenance complex component 4
85. UTP3 ENSGALG00000011553 8814 0.896 - - - - - - 0.896 - - - UTP3, small subunit processome component homolog (S. cerevisiae)
86. CDKN1B ENSGALG00000022980 4606 0.896 - - - - 0.896 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
87. RALGDS ENSGALG00000003412 4478 0.896 - - - - 0.896 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
88. BAHD1 ENSGALG00000033675 1779 0.896 - - - - 0.896 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
89. MRPL16 ENSGALG00000029419 8033 0.896 - - - - 0.896 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
90. CDH3 5050 0.896 - - - - 0.896 - - - - - cadherin 3
91. LGMN ENSGALG00000010811 7401 0.896 - - - - 0.896 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
92. ACAT2 ENSGALG00000011659 12825 0.896 - - - - 0.896 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
93. RAD54B ENSGALG00000043597 1699 0.896 - - - - 0.896 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
94. SRP19 ENSGALG00000000218 14207 0.896 - - - - 0.896 - - - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
95. PSMB3 ENSGALG00000001597 22588 0.896 - - - - - - 0.896 - - - proteasome subunit beta 3 [Source:HGNC Symbol;Acc:HGNC:9540]
96. HDAC8 ENSGALG00000004825 12066 0.895 - - - - 0.895 - - - - - histone deacetylase 8, transcript variant X2
97. SNX14 ENSGALG00000015831 2554 0.895 - - - - 0.895 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
98. CDCA4 ENSGALG00000011692 10381 0.895 - - - - 0.895 - - - - - cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
99. PBRM1 ENSGALG00000037455 6450 0.895 - - - - 0.895 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
100. RNF4 ENSGALG00000015668 15780 0.894 - - - - 0.894 - - - - - ring finger protein 4 [Source:NCBI gene;Acc:422886]

There are 414 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA