Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for VHL

Gene Name Gene ID Reads Annotation
VHL ENSGALG00000028009 25009 von Hippel-Lindau tumor suppressor, transcript variant X1











Genes with expression patterns similar to VHL

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VHL ENSGALG00000028009 25009 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 von Hippel-Lindau tumor suppressor, transcript variant X1
2. IBA57 ENSGALG00000005328 4362 1.608 - - - - 0.866 - - 0.742 - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
3. TBRG4 ENSGALG00000038102 9269 1.595 - - - - 0.859 0.736 - - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
4. SUPT4H1 ENSGALG00000000944 8675 1.501 - - - - - - 0.736 0.765 - - SPT4 homolog, DSIF elongation factor subunit [Source:NCBI gene;Acc:417470]
5. ZFP91 ENSGALG00000007287 13681 1.443 - - - - - - 0.724 0.719 - - ZFP91 zinc finger protein
6. COX6C ENSGALG00000035996 70514 0.979 - - - - - - 0.979 - - - cytochrome c oxidase subunit 6C [Source:NCBI gene;Acc:420243]
7. AZIN1 ENSGALG00000029295 11085 0.971 - - - - 0.971 - - - - - antizyme inhibitor 1 [Source:NCBI gene;Acc:420254]
8. WBP11 ENSGALG00000011745 11182 0.964 - - - - 0.964 - - - - - WW domain binding protein 11, transcript variant X1
9. ZMAT2 ENSGALG00000041746 23601 0.961 - - - - 0.961 - - - - - zinc finger matrin-type 2 [Source:NCBI gene;Acc:427602]
10. SNX12 ENSGALG00000005659 9503 0.956 - - - - 0.956 - - - - - sorting nexin 12 [Source:NCBI gene;Acc:428704]
11. ACO1 ENSGALG00000002162 6645 0.95 - - - - 0.950 - - - - - aconitase 1, soluble [Source:NCBI gene;Acc:373916]
12. MRPL42 ENSGALG00000011293 15145 0.936 - - - - 0.936 - - - - - mitochondrial ribosomal protein L42 [Source:HGNC Symbol;Acc:HGNC:14493]
13. COX4I1 68632 0.932 - - - - 0.932 - - - - - cytochrome c oxidase subunit 4I1, transcript variant X1
14. LCLAT1 ENSGALG00000009056 5207 0.895 - - - - 0.895 - - - - - lysocardiolipin acyltransferase 1 [Source:NCBI gene;Acc:421303]
15. ANKHD1 ENSGALG00000001099 10103 0.891 - - - - - - - 0.891 - - ankyrin repeat and KH domain containing 1 [Source:NCBI gene;Acc:416143]
16. TNPO3 ENSGALG00000039420 5178 0.881 - - - - 0.881 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
17. C15H12ORF49 C15H12ORF49 13250 0.88 - - - - 0.880 - - - - -
18. TSSC4 ENSGALG00000006530 10413 0.879 - - - - 0.879 - - - - - tumor suppressing subtransferable candidate 4 [Source:NCBI gene;Acc:423092]
19. VPS8 ENSGALG00000006704 5419 0.877 - - - - 0.877 - - - - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
20. UQCRC2 ENSGALG00000002490 23477 0.874 - - - - 0.874 - - - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
21. CWC22 ENSGALG00000009001 5984 0.873 - - - - 0.873 - - - - - CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
22. RILPL2 ENSGALG00000003321 5632 0.873 - - - - 0.873 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
23. MRPL22 ENSGALG00000003919 2760 0.873 - - - - 0.873 - - - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
24. HTRA3 ENSGALG00000034673 512 0.872 - - - - 0.872 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
25. NSG1 ENSGALG00000015010 5829 0.871 - - - - 0.871 - - - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
26. NDST2 ENSGALG00000005107 4224 0.871 - - - - 0.871 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
27. RAE1 ENSGALG00000007653 8930 0.871 - - - - 0.871 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
28. MAP1B ENSGALG00000014999 6288 0.87 - - - - 0.870 - - - - - microtubule associated protein 1B
29. OPTC ENSGALG00000003554 3698 0.87 - - - - 0.870 - - - - - opticin [Source:NCBI gene;Acc:395130]
30. gga-mir-6584 ENSGALG00000028834 1481 0.87 - - - - 0.870 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
31. PHKA1 ENSGALG00000004801 2510 0.869 - - - - 0.869 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
32. WHSC1L1 4065 0.869 - - - - 0.869 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
33. RNF113A ENSGALG00000000538 3985 0.869 - - - - 0.869 - - - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
34. UBE2G2 ENSGALG00000005667 12689 0.869 - - - - 0.869 - - - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
35. MRPL46 ENSGALG00000006782 5033 0.868 - - - - 0.868 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
36. SEC61A2 ENSGALG00000036300 4235 0.868 - - - - 0.868 - - - - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
37. SPG21 ENSGALG00000007262 8050 0.868 - - - - 0.868 - - - - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
38. ZEB1 ENSGALG00000007260 9277 0.868 - - - - 0.868 - - - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
39. TBC1D7 ENSGALG00000012731 4891 0.867 - - - - 0.867 - - - - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
40. ABCC1 ENSGALG00000006646 2596 0.867 - - - - 0.867 - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
41. MYEOV2 MYEOV2 5155 0.867 - - - - 0.867 - - - - -
42. RBM26 ENSGALG00000016910 13769 0.867 - - - - 0.867 - - - - - RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327]
43. MED1 ENSGALG00000001708 9556 0.866 - - - - 0.866 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
44. HYOU1 ENSGALG00000007659 3555 0.866 - - - - 0.866 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
45. PPAPDC1B PPAPDC1B 6698 0.866 - - - - 0.866 - - - - -
46. MRPS9 ENSGALG00000016794 5875 0.865 - - - - - - - 0.865 - - mitochondrial ribosomal protein S9 [Source:NCBI gene;Acc:418723]
47. SEC63 ENSGALG00000015308 11596 0.865 - - - - 0.865 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
48. AGPAT3 ENSGALG00000031932 6903 0.864 - - - - 0.864 - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
49. FAM98A ENSGALG00000010428 9585 0.864 - - - - 0.864 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
50. EPB41L1 ENSGALG00000034171 3616 0.864 - - - - 0.864 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
51. EWSR1 ENSGALG00000008149 13014 0.864 - - - - - - - 0.864 - - EWS RNA binding protein 1 [Source:NCBI gene;Acc:417022]
52. TMEM39B ENSGALG00000003287 4125 0.863 - - - - 0.863 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
53. HMGB3 ENSGALG00000009071 12011 0.863 - - - - 0.863 - - - - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
54. CCDC59 ENSGALG00000028648 9272 0.863 - - - - 0.863 - - - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
55. BCL9 ENSGALG00000037655 4620 0.863 - - - - 0.863 - - - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
56. THBS1 ENSGALG00000009626 3521 0.861 - - - - 0.861 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
57. SAMM50 ENSGALG00000014194 20437 0.86 - - - - 0.860 - - - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
58. DNAJC2 ENSGALG00000008249 28064 0.86 - - - - 0.860 - - - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
59. ESRP2 ENSGALG00000003374 4436 0.86 - - - - 0.860 - - - - - epithelial splicing regulatory protein 2 [Source:NCBI gene;Acc:415710]
60. USP1 ENSGALG00000010957 8297 0.86 - - - - 0.860 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
61. NOL6 ENSGALG00000030730 7191 0.86 - - - - 0.860 - - - - - nucleolar protein 6
62. TM2D2 ENSGALG00000003356 7088 0.86 - - - - 0.860 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
63. KCTD9 ENSGALG00000000275 3455 0.86 - - - - 0.860 - - - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
64. RAB21 ENSGALG00000010183 7718 0.858 - - - - 0.858 - - - - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
65. HOXB3 ENSGALG00000043219 5198 0.856 - - - - 0.856 - - - - - homeobox B3 [Source:NCBI gene;Acc:395502]
66. MRPS11 ENSGALG00000006777 16009 0.855 - - - - 0.855 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
67. C4orf27 C4orf27 16724 0.855 - - - - 0.855 - - - - -
68. TRIM33 ENSGALG00000001976 7404 0.852 - - - - 0.852 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
69. PGAM5 ENSGALG00000002137 7700 0.852 - - - - 0.852 - - - - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
70. PSMD14 ENSGALG00000011128 13335 0.851 - - - - 0.851 - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
71. CENPE ENSGALG00000013208 12337 0.85 - - - - 0.850 - - - - - centromere protein E, transcript variant X4
72. M6PR ENSGALG00000031681 9442 0.85 - - - - 0.850 - - - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
73. TMEM18 ENSGALG00000028744 11779 0.85 - - - - 0.850 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
74. EIF3L ENSGALG00000012296 42627 0.849 - - - - 0.849 - - - - - eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
75. PAX-7 PAX-7 3856 0.848 - - - - 0.848 - - - - -
76. RALB ENSGALG00000026493 14590 0.846 - - - - 0.846 - - - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
77. INCENP ENSGALG00000007537 16617 0.844 - - - - 0.844 - - - - - inner centromere protein [Source:NCBI gene;Acc:396270]
78. LUC7L2 ENSGALG00000036238 11817 0.844 - - - - 0.844 - - - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
79. MORN4 ENSGALG00000006149 7772 0.843 - - - - 0.843 - - - - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
80. CDC5L ENSGALG00000016704 22893 0.843 - - - - 0.843 - - - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
81. CUEDC2 ENSGALG00000005687 8162 0.842 - - - - - - - 0.842 - - CUE domain containing 2 [Source:NCBI gene;Acc:423761]
82. TCF7L2 ENSGALG00000008883 13688 0.841 - - - - 0.841 - - - - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]
83. OAF ENSGALG00000006715 12518 0.841 - - - - 0.841 - - - - - out at first homolog [Source:NCBI gene;Acc:395161]
84. MCM4 ENSGALG00000012915 13151 0.84 - - - - 0.840 - - - - - minichromosome maintenance complex component 4
85. NUP37 ENSGALG00000012759 9985 0.84 - - - - 0.840 - - - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
86. SMNDC1 ENSGALG00000008561 14415 0.835 - - - - 0.835 - - - - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
87. ETF1 ENSGALG00000002262 14560 0.835 - - - - 0.835 - - - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
88. MTF2 ENSGALG00000043087 15225 0.834 - - - - 0.834 - - - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
89. XRN2 ENSGALG00000008372 22164 0.832 - - - - 0.832 - - - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
90. CREPT CREPT 17142 0.829 - - - - 0.829 - - - - -
91. ABCF2 ENSGALG00000034573 15639 0.828 - - - - 0.828 - - - - - ATP binding cassette subfamily F member 2 [Source:NCBI gene;Acc:426038]
92. BRP44L BRP44L 30452 0.826 - - - - 0.826 - - - - -
93. EPFIP1L ENSGALG00000007683 18050 0.825 - - - - 0.825 - - - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
94. SMC3 ENSGALG00000008585 16618 0.822 - - - - 0.822 - - - - - structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
95. SPTBN1 ENSGALG00000029512 18579 0.815 - - - - - - - 0.815 - - spectrin beta, non-erythrocytic 1 [Source:NCBI gene;Acc:421216]
96. PUF60 ENSGALG00000039901 26902 0.813 - - - - 0.813 - - - - - poly(U) binding splicing factor 60 [Source:NCBI gene;Acc:426402]
97. PDPK1 ENSGALG00000006418 13412 0.813 - - - - - - - 0.813 - - 3-phosphoinositide dependent protein kinase 1 [Source:NCBI gene;Acc:416588]
98. ENSGALG00000026041 ENSGALG00000026041 13390 0.802 - - - - 0.802 - - - - -
99. RUNX1T1 ENSGALG00000033091 17529 0.795 - - - - 0.795 - - - - - RUNX1 translocation partner 1 [Source:NCBI gene;Acc:395503]
100. PRKCI ENSGALG00000009364 11574 0.793 - - - - - - - 0.793 - - protein kinase C iota [Source:NCBI gene;Acc:424991]

There are 152 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA