Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for VAPB

Gene Name Gene ID Reads Annotation
VAPB ENSGALG00000007549 15511 VAMP associated protein B and C [Source:NCBI gene;Acc:419317]











Genes with expression patterns similar to VAPB

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. VAPB ENSGALG00000007549 15511 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 VAMP associated protein B and C [Source:NCBI gene;Acc:419317]
2. RHOT1 ENSGALG00000003397 5149 2.487 - - - - - - 0.748 0.907 - 0.832 ras homolog family member T1 [Source:NCBI gene;Acc:417410]
3. NFI1 NFI1 6210 1.735 - - 0.751 - - - - 0.984 - -
4. ANKRD17 ENSGALG00000011642 3192 1.689 - - - - - - - 0.914 - 0.775 ankyrin repeat domain 17 [Source:HGNC Symbol;Acc:HGNC:23575]
5. MB21D1 2460 1.672 - - - - - - - 0.919 - 0.753 Mab-21 domain containing 1
6. UFD1L 12964 1.663 - - - - - - - 0.900 - 0.763 ubiquitin fusion degradation 1 like (yeast)
7. ERLIN1 ENSGALG00000003308 6427 1.615 - - - - - - 0.729 0.886 - - ER lipid raft associated 1 [Source:NCBI gene;Acc:423670]
8. RALGAPB ENSGALG00000001420 5112 1.574 - - - - - - 0.742 - - 0.832 Ral GTPase activating protein non-catalytic beta subunit [Source:NCBI gene;Acc:419128]
9. TSSC4 ENSGALG00000006530 10413 1.573 - - - - - - 0.742 0.831 - - tumor suppressing subtransferable candidate 4 [Source:NCBI gene;Acc:423092]
10. PGD ENSGALG00000002797 15115 1.566 - - - - - - 0.836 - - 0.730 phosphogluconate dehydrogenase [Source:NCBI gene;Acc:419450]
11. TXNDC12 ENSGALG00000010569 13822 1.565 - - - - - - 0.714 - - 0.851 thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
12. CASP8AP2 ENSGALG00000015611 5657 1.553 - - - - - - 0.717 - - 0.836 caspase 8 associated protein 2 [Source:HGNC Symbol;Acc:HGNC:1510]
13. PNRC2 ENSGALG00000004122 19228 1.553 - - - - - - - 0.761 - 0.792 proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]
14. ASAP2 ENSGALG00000016419 1393 1.548 - - - - - - 0.774 - - 0.774 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
15. ZCCHC8 ENSGALG00000004486 3201 1.545 - - 0.747 - - - 0.798 - - - zinc finger CCHC-type containing 8 [Source:NCBI gene;Acc:416862]
16. RER1 ENSGALG00000021683 9074 1.545 - - - - - - 0.757 - - 0.788 retention in endoplasmic reticulum sorting receptor 1 [Source:NCBI gene;Acc:419397]
17. ATP6V0C ENSGALG00000009229 125870 1.543 - - 0.711 - - - - - - 0.832 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
18. NRSN1 ENSGALG00000037811 11424 1.541 - - - - - - - 0.742 - 0.799 neurensin 1 [Source:HGNC Symbol;Acc:HGNC:17881]
19. SLC25A20 ENSGALG00000028227 7685 1.535 - - 0.715 - - - - 0.820 - - solute carrier family 25 member 20 [Source:HGNC Symbol;Acc:HGNC:1421]
20. ELOVL5 ENSGALG00000016314 18163 1.53 - - 0.727 - - - 0.803 - - - ELOVL fatty acid elongase 5 [Source:NCBI gene;Acc:428646]
21. WHSC1 1712 1.53 - - 0.734 - - - - - - 0.796 Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
22. SMC4 ENSGALG00000009553 15715 1.52 - - 0.754 - - - - - - 0.766 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
23. CPSF2 ENSGALG00000010783 5236 1.517 - - - - - - - 0.759 - 0.758 cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:423416]
24. FREM3 ENSGALG00000020561 1824 1.509 - - - - - - 0.737 - - 0.772 FRAS1 related extracellular matrix 3
25. SERINC1 ENSGALG00000014868 12484 1.508 - - - - - - 0.750 - - 0.758 serine incorporator 1 [Source:NCBI gene;Acc:421722]
26. SLC12A4 ENSGALG00000034179 5674 1.48 - - 0.735 - - - - - - 0.745 solute carrier family 12 member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
27. GPX8 ENSGALG00000026704 4497 1.47 - - - - - - 0.748 - - 0.722 glutathione peroxidase 8 (putative) [Source:HGNC Symbol;Acc:HGNC:33100]
28. HMGN1 ENSGALG00000016067 17375 1.456 - - 0.732 - - - 0.724 - - - high mobility group nucleosome binding domain 1 [Source:NCBI gene;Acc:395999]
29. CAMSAP1 ENSGALG00000001692 2617 1.455 - - 0.710 - - - - - - 0.745 calmodulin regulated spectrin associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
30. DDX42 ENSGALG00000000581 8780 1.449 - - 0.710 - - - 0.739 - - - DEAD-box helicase 42 [Source:NCBI gene;Acc:419959]
31. COG7 ENSGALG00000006156 4072 1.449 - - 0.713 - - - 0.736 - - - component of oligomeric golgi complex 7 [Source:NCBI gene;Acc:416578]
32. SP3 ENSGALG00000031796 8997 1.447 - - 0.718 - - - - - - 0.729 Sp3 transcription factor [Source:NCBI gene;Acc:395302]
33. MYEOV2 MYEOV2 5155 1.44 - - - - - - 0.737 - - 0.703
34. SEPHS1 ENSGALG00000014575 10701 1.434 - - 0.732 - - - - 0.702 - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
35. RAB6A ENSGALG00000017320 10569 0.979 - - - - - - - 0.979 - - RAB6A, member RAS oncogene family [Source:NCBI gene;Acc:419063]
36. MRPL48 ENSGALG00000017319 9773 0.967 - - - - - - - 0.967 - - mitochondrial ribosomal protein L48 [Source:NCBI gene;Acc:419062]
37. FKBP15 ENSGALG00000008838 3677 0.967 - - - - - - - 0.967 - - FK506 binding protein 15 [Source:HGNC Symbol;Acc:HGNC:23397]
38. RNF10 ENSGALG00000036417 8027 0.967 - - - - - - - 0.967 - - ring finger protein 10 [Source:HGNC Symbol;Acc:HGNC:10055]
39. CHN1 ENSGALG00000009293 6415 0.964 - - - - - - - 0.964 - - chimerin 1 [Source:NCBI gene;Acc:429021]
40. LGALS1 ENSGALG00000012420 13993 0.963 - - - - - - - 0.963 - - galectin 1 [Source:NCBI gene;Acc:396491]
41. HDHD2 ENSGALG00000034801 6373 0.963 - - - - - - - 0.963 - - haloacid dehalogenase like hydrolase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25364]
42. IPO9 ENSGALG00000000397 9263 0.949 - - - - - - - 0.949 - - importin 9 [Source:HGNC Symbol;Acc:HGNC:19425]
43. PACSIN3 ENSGALG00000008231 5423 0.927 - - - - - - - 0.927 - - protein kinase C and casein kinase substrate in neurons 3 [Source:NCBI gene;Acc:423186]
44. TTYH2 ENSGALG00000026940 15628 0.925 - - - - - - - 0.925 - - tweety family member 2 [Source:HGNC Symbol;Acc:HGNC:13877]
45. KDM4B ENSGALG00000034592 6711 0.925 - - - - - - - 0.925 - - lysine demethylase 4B, transcript variant X8
46. KCTD9 ENSGALG00000000275 3455 0.922 - - - - - - - 0.922 - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
47. ADD1 ENSGALG00000015664 6828 0.921 - - - - - - - 0.921 - - adducin 1 [Source:NCBI gene;Acc:422882]
48. EPS15 ENSGALG00000010543 1598 0.921 - - - - - - - 0.921 - - epidermal growth factor receptor pathway substrate 15 [Source:NCBI gene;Acc:424633]
49. PTPN11 ENSGALG00000004821 2658 0.92 - - - - - - - 0.920 - - protein tyrosine phosphatase, non-receptor type 11 [Source:NCBI gene;Acc:395815]
50. MTRF1 ENSGALG00000016951 3983 0.919 - - - - - - - 0.919 - - mitochondrial translation release factor 1 [Source:HGNC Symbol;Acc:HGNC:7469]
51. ADARB1 ENSGALG00000007527 2480 0.917 - - - - - - - 0.917 - - adenosine deaminase, RNA specific B1 [Source:NCBI gene;Acc:374087]
52. EED ENSGALG00000014060 6467 0.917 - - - - - - - 0.917 - - embryonic ectoderm development [Source:NCBI gene;Acc:426381]
53. PPT1 ENSGALG00000003936 2540 0.916 - - - - - - - 0.916 - - palmitoyl-protein thioesterase 1 [Source:NCBI gene;Acc:419681]
54. VPS13B 2293 0.916 - - - - - - - 0.916 - - vacuolar protein sorting 13 homolog B
55. DENND5B 4077 0.916 - - - - - - - 0.916 - - DENN domain containing 5B, transcript variant X1
56. gga-mir-1787 ENSGALG00000025542 1373 0.916 - - - - - - - 0.916 - - gga-mir-1787 [Source:miRBase;Acc:MI0007530]
57. ACAP2 ENSGALG00000007040 4182 0.916 - - - - - - - 0.916 - - ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 [Source:NCBI gene;Acc:424895]
58. PGS1 ENSGALG00000007181 3187 0.916 - - - - - - - 0.916 - - phosphatidylglycerophosphate synthase 1 [Source:NCBI gene;Acc:422087]
59. H2AFY_1 ENSGALG00000040141 4895 0.915 - - - - - - - 0.915 - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
60. CMC1 ENSGALG00000025811 3939 0.915 - - - - - - - 0.915 - - C-X9-C motif containing 1
61. LIN7C ENSGALG00000012170 5043 0.915 - - - - - - - 0.915 - - lin-7 homolog C, crumbs cell polarity complex component [Source:NCBI gene;Acc:421608]
62. MAK16 ENSGALG00000001663 7455 0.915 - - - - - - - 0.915 - - MAK16 homolog [Source:HGNC Symbol;Acc:HGNC:13703]
63. RBM6 ENSGALG00000035578 1690 0.915 - - - - - - - 0.915 - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
64. FGFRL1 ENSGALG00000037525 1687 0.915 - - - - - - - 0.915 - - fibroblast growth factor receptor like 1 [Source:NCBI gene;Acc:395107]
65. KIAA1432 KIAA1432 1792 0.914 - - - - - - - 0.914 - -
66. DDHD1 ENSGALG00000012426 6068 0.913 - - - - - - - 0.913 - - DDHD domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19714]
67. KNOP1 ENSGALG00000002042 6251 0.913 - - - - - - - 0.913 - - lysine-rich nucleolar protein 1, transcript variant X1
68. OMA1 ENSGALG00000010861 3328 0.913 - - - - - - - 0.913 - - OMA1 zinc metallopeptidase [Source:HGNC Symbol;Acc:HGNC:29661]
69. NAA50 ENSGALG00000033889 3551 0.912 - - - - - - - 0.912 - - N(alpha)-acetyltransferase 50, NatE catalytic subunit [Source:NCBI gene;Acc:418319]
70. QARS ENSGALG00000029980 4207 0.911 - - - - - - - 0.911 - - glutaminyl-tRNA synthetase [Source:NCBI gene;Acc:416057]
71. PRORSD1P ENSGALG00000034854 2924 0.911 - - - - - - - 0.911 - - prolyl-tRNA synthetase associated domain containing 1, pseudogene [Source:NCBI gene;Acc:421212]
72. MED10 ENSGALG00000028336 9343 0.91 - - - - - - - 0.910 - - mediator complex subunit 10 [Source:HGNC Symbol;Acc:HGNC:28760]
73. FBXW8 ENSGALG00000008207 1639 0.909 - - - - - - - 0.909 - - F-box and WD repeat domain containing 8 [Source:HGNC Symbol;Acc:HGNC:13597]
74. TMEM100 ENSGALG00000026465 1785 0.909 - - - - - - - 0.909 - - transmembrane protein 100 [Source:HGNC Symbol;Acc:HGNC:25607]
75. NFASC ENSGALG00000031776 4264 0.909 - - - - - - - 0.909 - - neurofascin [Source:NCBI gene;Acc:419824]
76. TECPR2 ENSGALG00000011373 1063 0.909 - - - - - - - 0.909 - - tectonin beta-propeller repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:19957]
77. ENSGALG00000026930 ENSGALG00000026930 681 0.908 - - - - - - - 0.908 - -
78. SNCAIP ENSGALG00000005330 2425 0.908 - - - - - - - 0.908 - - synuclein alpha interacting protein [Source:HGNC Symbol;Acc:HGNC:11139]
79. RPAP1 ENSGALG00000008624 3522 0.908 - - - - - - - 0.908 - - RNA polymerase II associated protein 1 [Source:HGNC Symbol;Acc:HGNC:24567]
80. ZMYM4 ENSGALG00000002499 435 0.908 - - - - - - - 0.908 - - zinc finger MYM-type containing 4, transcript variant X1
81. VRK1 ENSGALG00000011116 4524 0.907 - - - - - - - 0.907 - - vaccinia related kinase 1 [Source:NCBI gene;Acc:423443]
82. RIOK1 ENSGALG00000012795 4658 0.907 - - - - - - - 0.907 - - RIO kinase 1 [Source:HGNC Symbol;Acc:HGNC:18656]
83. DOCK8 481 0.907 - - - - - - - 0.907 - - dedicator of cytokinesis 8, transcript variant X1
84. PAX-6 PAX-6 2650 0.907 - - - - - - - 0.907 - -
85. FAS ENSGALG00000006351 461 0.906 - - - - - - - 0.906 - - Fas cell surface death receptor [Source:NCBI gene;Acc:395274]
86. C3H2ORF43 C3H2ORF43 5628 0.905 - - - - - - - 0.905 - -
87. SNAPC5 ENSGALG00000007695 4117 0.898 - - - - - - - 0.898 - - small nuclear RNA activating complex polypeptide 5 [Source:NCBI gene;Acc:415550]
88. TAX1BP1 ENSGALG00000042822 7728 0.898 - - - - - - - 0.898 - - Tax1 binding protein 1 [Source:NCBI gene;Acc:395490]
89. APIP ENSGALG00000031286 6838 0.894 - - - - - - - 0.894 - - APAF1 interacting protein [Source:NCBI gene;Acc:428860]
90. ACADSB ENSGALG00000041417 7710 0.89 - - - - - - - 0.890 - - acyl-CoA dehydrogenase short/branched chain [Source:NCBI gene;Acc:423947]
91. FAM192A ENSGALG00000021473 10213 0.89 - - - - - - - 0.890 - - family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
92. LMNB2 ENSGALG00000000470 4364 0.889 - - - - - - - 0.889 - - lamin B2 [Source:NCBI gene;Acc:396222]
93. RBP5 ENSGALG00000014662 31268 0.888 - - - - - - - 0.888 - - retinol binding protein 5 [Source:NCBI gene;Acc:418296]
94. ATXN2 ENSGALG00000004625 6306 0.885 - - - - - - 0.885 - - - ataxin 2 [Source:HGNC Symbol;Acc:HGNC:10555]
95. WBP11 ENSGALG00000011745 11182 0.882 - - - - - - - 0.882 - - WW domain binding protein 11, transcript variant X1
96. STT3B ENSGALG00000011465 11939 0.882 - - - - - - - 0.882 - - STT3B, catalytic subunit of the oligosaccharyltransferase complex [Source:NCBI gene;Acc:428444]
97. ATP8B1 ENSGALG00000030834 521 0.88 - - - - - - - 0.880 - - ATPase phospholipid transporting 8B1 [Source:NCBI gene;Acc:426857]
98. PITPNB ENSGALG00000005654 21578 0.88 - - - - - - 0.880 - - - phosphatidylinositol transfer protein beta [Source:NCBI gene;Acc:416912]
99. KXD1 ENSGALG00000036736 3771 0.874 - - - - - - - 0.874 - - KxDL motif containing 1 [Source:HGNC Symbol;Acc:HGNC:28420]
100. SRP19 ENSGALG00000000218 14207 0.867 - - - - - - 0.867 - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]

There are 732 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA