Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Usf1

Gene Name Gene ID Reads Annotation
Usf1 ENSMUSG00000026641 336 upstream transcription factor 1 [Source:MGI Symbol;Acc:MGI:99542]







Genes with expression patterns similar to Usf1

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Usf1 ENSMUSG00000026641 336 6 1.000 1.000 1.000 1.000 1.000 1.000 upstream transcription factor 1 [Source:MGI Symbol;Acc:MGI:99542]
2. Fam132b 102 1.853 - 0.992 - 0.861 - - family with sequence similarity 132, member B, transcript variant X3
3. Tmem243 ENSMUSG00000079659 181 1.741 - 0.988 - 0.753 - - transmembrane protein 243, mitochondrial [Source:MGI Symbol;Acc:MGI:3606159]
4. 4632434I11Rik 4632434I11Rik 951 1.665 - 0.957 - 0.708 - -
5. Scara5 ENSMUSG00000022032 68 0.994 - 0.994 - - - - scavenger receptor class A, member 5 [Source:MGI Symbol;Acc:MGI:1918395]
6. Irgm1 ENSMUSG00000046879, ENSMUSG00000116444 77 0.994 - 0.994 - - - - immunity-related GTPase family M member 1 [Source:NCBI gene;Acc:15944]
7. Slc16a9 ENSMUSG00000037762 83 0.993 - 0.993 - - - - solute carrier family 16 (monocarboxylic acid transporters), member 9 [Source:MGI Symbol;Acc:MGI:1914109]
8. Gnpda2 ENSMUSG00000029209 182 0.993 - 0.993 - - - - glucosamine-6-phosphate deaminase 2 [Source:MGI Symbol;Acc:MGI:1915230]
9. Gm16300 ENSMUSG00000089828 225 0.992 - 0.992 - - - - predicted gene 16300 [Source:MGI Symbol;Acc:MGI:3826587]
10. Gm10307 ENSMUSG00000101093 159 0.992 - 0.992 - - - - predicted gene 10307 [Source:MGI Symbol;Acc:MGI:3642371]
11. Fam120aos ENSMUSG00000097059 81 0.991 - 0.991 - - - - family with sequence similarity 120A, opposite strand [Source:MGI Symbol;Acc:MGI:1915378]
12. Gm4335 ENSMUSG00000097989 113 0.991 - 0.991 - - - - predicted gene 4335 [Source:MGI Symbol;Acc:MGI:3782519]
13. Gm8349 ENSMUSG00000098208 124 0.991 - 0.991 - - - - predicted gene 8349 [Source:MGI Symbol;Acc:MGI:3643135]
14. Zfp947 ENSMUSG00000063383 396 0.99 - 0.990 - - - - zinc finger protein 947 [Source:MGI Symbol;Acc:MGI:3646759]
15. Gm13652 ENSMUSG00000087333 91 0.99 - 0.990 - - - - predicted gene 13652 [Source:MGI Symbol;Acc:MGI:3650033]
16. Gm11944 ENSMUSG00000084941 286 0.99 - 0.990 - - - - predicted gene 11944 [Source:MGI Symbol;Acc:MGI:3702312]
17. Rfx5 ENSMUSG00000005774 204 0.99 - 0.990 - - - - regulatory factor X, 5 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1858421]
18. Gm16409 ENSMUSG00000075581 176 0.989 - 0.989 - - - - predicted gene 16409 [Source:MGI Symbol;Acc:MGI:3646708]
19. Dpy19l4 ENSMUSG00000045205 962 0.989 - 0.989 - - - - dpy-19-like 4 (C. elegans) [Source:MGI Symbol;Acc:MGI:2685869]
20. 0610005C13Rik ENSMUSG00000109644 478 0.988 - 0.988 - - - - RIKEN cDNA 0610005C13 gene [Source:MGI Symbol;Acc:MGI:1918911]
21. Pdgfb ENSMUSG00000000489 325 0.986 - 0.986 - - - - platelet derived growth factor, B polypeptide [Source:MGI Symbol;Acc:MGI:97528]
22. Gm16702 ENSMUSG00000097796 133 0.986 - 0.986 - - - - predicted gene, 16702 [Source:MGI Symbol;Acc:MGI:4439626]
23. C2cd2l ENSMUSG00000032120 223 0.985 - 0.985 - - - - C2 calcium-dependent domain containing 2-like [Source:MGI Symbol;Acc:MGI:1919014]
24. Ccar2 ENSMUSG00000033712 2357 0.985 - 0.985 - - - - cell cycle activator and apoptosis regulator 2 [Source:MGI Symbol;Acc:MGI:2444228]
25. 4933415A04Rik ENSMUSG00000045877 412 0.985 - 0.985 - - - - RIKEN cDNA 4933415A04 gene [Source:MGI Symbol;Acc:MGI:1922977]
26. Cyr61 ENSMUSG00000028195 563 0.985 - 0.985 - - - - cysteine rich protein 61 [Source:MGI Symbol;Acc:MGI:88613]
27. Phospho2 ENSMUSG00000027088 921 0.981 - 0.981 - - - - phosphatase, orphan 2 [Source:MGI Symbol;Acc:MGI:1920623]
28. Gm26822 ENSMUSG00000096921 421 0.981 - 0.981 - - - - predicted gene, 26822 [Source:MGI Symbol;Acc:MGI:5477316]
29. Rspo2 ENSMUSG00000051920 204 0.98 - 0.980 - - - - R-spondin 2 [Source:MGI Symbol;Acc:MGI:1922667]
30. Prcc ENSMUSG00000004895 527 0.98 - 0.980 - - - - papillary renal cell carcinoma (translocation-associated) [Source:MGI Symbol;Acc:MGI:2137738]
31. Rrp15 ENSMUSG00000001305 966 0.98 - 0.980 - - - - ribosomal RNA processing 15 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1914473]
32. Vps9d1 ENSMUSG00000001062 694 0.979 - 0.979 - - - - VPS9 domain containing 1 [Source:MGI Symbol;Acc:MGI:1914143]
33. Wnk3 ENSMUSG00000041245 552 0.978 - 0.978 - - - - WNK lysine deficient protein kinase 3 [Source:MGI Symbol;Acc:MGI:2652875]
34. Map10 ENSMUSG00000050930 246 0.978 - 0.978 - - - - microtubule-associated protein 10 [Source:MGI Symbol;Acc:MGI:1921643]
35. Pank1 ENSMUSG00000033610 1083 0.977 - 0.977 - - - - pantothenate kinase 1 [Source:MGI Symbol;Acc:MGI:1922985]
36. Pigu ENSMUSG00000038383 705 0.977 - 0.977 - - - - phosphatidylinositol glycan anchor biosynthesis, class U [Source:MGI Symbol;Acc:MGI:3039607]
37. Arhgap23 ENSMUSG00000049807 1316 0.977 - 0.977 - - - - Rho GTPase activating protein 23 [Source:MGI Symbol;Acc:MGI:3697726]
38. Gm10689 ENSMUSG00000074412 328 0.977 - 0.977 - - - - predicted gene 10689 [Source:MGI Symbol;Acc:MGI:3642613]
39. Lamtor2 ENSMUSG00000028062 570 0.976 - 0.976 - - - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 [Source:MGI Symbol;Acc:MGI:1932697]
40. Chfr ENSMUSG00000014668 1287 0.975 - 0.975 - - - - checkpoint with forkhead and ring finger domains [Source:MGI Symbol;Acc:MGI:2444898]
41. Taf1b ENSMUSG00000059669 413 0.975 - 0.975 - - - - TATA-box binding protein associated factor, RNA polymerase I, B [Source:MGI Symbol;Acc:MGI:109577]
42. Usp2 ENSMUSG00000032010 525 0.974 - 0.974 - - - - ubiquitin specific peptidase 2 [Source:MGI Symbol;Acc:MGI:1858178]
43. Gm15879 ENSMUSG00000084790 387 0.974 - 0.974 - - - - predicted gene 15879 [Source:MGI Symbol;Acc:MGI:3802012]
44. Tapt1 ENSMUSG00000046985 1206 0.974 - 0.974 - - - - transmembrane anterior posterior transformation 1 [Source:MGI Symbol;Acc:MGI:2683537]
45. Fndc3a ENSMUSG00000033487 1185 0.974 - 0.974 - - - - fibronectin type III domain containing 3A [Source:MGI Symbol;Acc:MGI:1196463]
46. Med13l ENSMUSG00000018076 1863 0.973 - 0.973 - - - - mediator complex subunit 13-like [Source:MGI Symbol;Acc:MGI:2670178]
47. Tceal3 ENSMUSG00000044550 742 0.972 - 0.972 - - - - transcription elongation factor A (SII)-like 3 [Source:MGI Symbol;Acc:MGI:1913354]
48. Sec11c ENSMUSG00000024516 640 0.972 - 0.972 - - - - SEC11 homolog C, signal peptidase complex subunit [Source:MGI Symbol;Acc:MGI:1913536]
49. Dip2a ENSMUSG00000020231 649 0.971 - 0.971 - - - - disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
50. Pgap1 ENSMUSG00000073678 833 0.971 - 0.971 - - - - post-GPI attachment to proteins 1 [Source:MGI Symbol;Acc:MGI:2443342]
51. Zfp609 ENSMUSG00000040524 1316 0.971 - 0.971 - - - - zinc finger protein 609 [Source:MGI Symbol;Acc:MGI:2674092]
52. Fam3c ENSMUSG00000029672 1429 0.97 - 0.970 - - - - family with sequence similarity 3, member C [Source:MGI Symbol;Acc:MGI:107892]
53. AW209491 ENSMUSG00000039182 618 0.968 - 0.968 - - - - expressed sequence AW209491 [Source:MGI Symbol;Acc:MGI:2145422]
54. Ednra ENSMUSG00000031616 1286 0.967 - 0.967 - - - - endothelin receptor type A [Source:MGI Symbol;Acc:MGI:105923]
55. Ubox5 ENSMUSG00000027300 434 0.967 - 0.967 - - - - U box domain containing 5 [Source:MGI Symbol;Acc:MGI:2154658]
56. Evi5l ENSMUSG00000011832 691 0.967 - 0.967 - - - - ecotropic viral integration site 5 like [Source:MGI Symbol;Acc:MGI:2442167]
57. Mtx3 ENSMUSG00000021704 616 0.966 - 0.966 - - - - metaxin 3 [Source:MGI Symbol;Acc:MGI:2686040]
58. Rab3gap1 ENSMUSG00000036104 515 0.966 - 0.966 - - - - RAB3 GTPase activating protein subunit 1 [Source:MGI Symbol;Acc:MGI:2445001]
59. Dido1 ENSMUSG00000038914 1891 0.965 - 0.965 - - - - death inducer-obliterator 1 [Source:MGI Symbol;Acc:MGI:1344352]
60. Rrnad1 ENSMUSG00000004896 798 0.965 - 0.965 - - - - ribosomal RNA adenine dimethylase domain containing 1 [Source:MGI Symbol;Acc:MGI:2387197]
61. Nsun4 ENSMUSG00000028706 804 0.964 - 0.964 - - - - NOL1/NOP2/Sun domain family, member 4 [Source:MGI Symbol;Acc:MGI:1919431]
62. Snapc3 ENSMUSG00000028483 2319 0.964 - 0.964 - - - - small nuclear RNA activating complex, polypeptide 3 [Source:MGI Symbol;Acc:MGI:1916338]
63. 0610010F05Rik ENSMUSG00000042208 755 0.964 - 0.964 - - - - RIKEN cDNA 0610010F05 gene [Source:MGI Symbol;Acc:MGI:1918925]
64. Gm12005 ENSMUSG00000081631 601 0.964 - 0.964 - - - - predicted gene 12005 [Source:MGI Symbol;Acc:MGI:3651316]
65. Oprm1 ENSMUSG00000000766 292 0.964 - 0.964 - - - - opioid receptor, mu 1 [Source:MGI Symbol;Acc:MGI:97441]
66. Tgfbrap1 ENSMUSG00000070939 1413 0.963 - 0.963 - - - - transforming growth factor, beta receptor associated protein 1 [Source:MGI Symbol;Acc:MGI:2447427]
67. Erlin1 ENSMUSG00000025198 667 0.962 - 0.962 - - - - ER lipid raft associated 1 [Source:MGI Symbol;Acc:MGI:2387613]
68. Mcam ENSMUSG00000032135 610 0.962 - 0.962 - - - - melanoma cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1933966]
69. Cryzl1 ENSMUSG00000058240 2195 0.961 - 0.961 - - - - crystallin, zeta (quinone reductase)-like 1 [Source:MGI Symbol;Acc:MGI:1913859]
70. Rrp7a ENSMUSG00000018040 942 0.961 - 0.961 - - - - ribosomal RNA processing 7 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1922028]
71. Phyh ENSMUSG00000026664 659 0.96 - 0.960 - - - - phytanoyl-CoA hydroxylase [Source:MGI Symbol;Acc:MGI:891978]
72. Fbn1 ENSMUSG00000027204 960 0.96 - 0.960 - - - - fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
73. Heatr5a ENSMUSG00000035181 1099 0.96 - 0.960 - - - - HEAT repeat containing 5A [Source:MGI Symbol;Acc:MGI:2444133]
74. Crcp ENSMUSG00000025532 699 0.959 - 0.959 - - - - calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
75. Mex3d ENSMUSG00000048696 2206 0.958 - 0.958 - - - - mex3 RNA binding family member D [Source:MGI Symbol;Acc:MGI:2681847]
76. Zswim1 ENSMUSG00000017764 460 0.958 - 0.958 - - - - zinc finger SWIM-type containing 1 [Source:MGI Symbol;Acc:MGI:1919221]
77. Dzank1 ENSMUSG00000037259 518 0.957 - 0.957 - - - - double zinc ribbon and ankyrin repeat domains 1 [Source:MGI Symbol;Acc:MGI:2139080]
78. Slc50a1 ENSMUSG00000027953 774 0.957 - 0.957 - - - - solute carrier family 50 (sugar transporter), member 1 [Source:MGI Symbol;Acc:MGI:107417]
79. Phkb ENSMUSG00000036879 701 0.956 - 0.956 - - - - phosphorylase kinase beta [Source:MGI Symbol;Acc:MGI:97578]
80. Atp8a1 ENSMUSG00000037685 1155 0.954 - 0.954 - - - - ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:MGI Symbol;Acc:MGI:1330848]
81. Ebf2 ENSMUSG00000022053 834 0.953 - 0.953 - - - - early B cell factor 2 [Source:MGI Symbol;Acc:MGI:894332]
82. Pan2 ENSMUSG00000005682 912 0.952 - 0.952 - - - - PAN2 poly(A) specific ribonuclease subunit [Source:MGI Symbol;Acc:MGI:1918984]
83. Kdm1b ENSMUSG00000038080 577 0.95 - 0.950 - - - - lysine (K)-specific demethylase 1B [Source:MGI Symbol;Acc:MGI:2145261]
84. Zswim7 ENSMUSG00000014243 799 0.95 - 0.950 - - - - zinc finger SWIM-type containing 7 [Source:MGI Symbol;Acc:MGI:1916997]
85. Acsl3 ENSMUSG00000032883 1975 0.949 - 0.949 - - - - acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
86. Gm16536 ENSMUSG00000089810 948 0.949 - 0.949 - - - - predicted gene 16536 [Source:MGI Symbol;Acc:MGI:4414956]
87. Pigs ENSMUSG00000041958 765 0.949 - 0.949 - - - - phosphatidylinositol glycan anchor biosynthesis, class S [Source:MGI Symbol;Acc:MGI:2687325]
88. Zfp30 ENSMUSG00000047473 562 0.947 - 0.947 - - - - zinc finger protein 30 [Source:MGI Symbol;Acc:MGI:99178]
89. Rps19bp1 ENSMUSG00000051518 828 0.946 - 0.946 - - - - ribosomal protein S19 binding protein 1 [Source:MGI Symbol;Acc:MGI:1913788]
90. Itfg2 ENSMUSG00000001518 1233 0.946 - 0.946 - - - - integrin alpha FG-GAP repeat containing 2 [Source:MGI Symbol;Acc:MGI:1915450]
91. Aldh5a1 ENSMUSG00000035936 922 0.946 - 0.946 - - - - aldhehyde dehydrogenase family 5, subfamily A1 [Source:MGI Symbol;Acc:MGI:2441982]
92. Ube2e2 ENSMUSG00000058317 729 0.945 - 0.945 - - - - ubiquitin-conjugating enzyme E2E 2 [Source:MGI Symbol;Acc:MGI:2384997]
93. Chka ENSMUSG00000024843 2599 0.943 - 0.943 - - - - choline kinase alpha [Source:MGI Symbol;Acc:MGI:107760]
94. Pdcd11 ENSMUSG00000025047 1164 0.943 - 0.943 - - - - programmed cell death 11 [Source:MGI Symbol;Acc:MGI:1341788]
95. Eri3 ENSMUSG00000033423 3943 0.943 - 0.943 - - - - exoribonuclease 3 [Source:MGI Symbol;Acc:MGI:2153887]
96. Ube2g2 ENSMUSG00000009293 1035 0.942 - 0.942 - - - - ubiquitin-conjugating enzyme E2G 2 [Source:MGI Symbol;Acc:MGI:1343188]
97. Zfp407 ENSMUSG00000048410 2356 0.942 - 0.942 - - - - zinc finger protein 407 [Source:MGI Symbol;Acc:MGI:2685179]
98. Actr3 ENSMUSG00000026341 4146 0.941 - 0.941 - - - - ARP3 actin-related protein 3 [Source:MGI Symbol;Acc:MGI:1921367]
99. E130307A14Rik ENSMUSG00000087177 1348 0.938 - 0.938 - - - - RIKEN cDNA E130307A14 gene [Source:MGI Symbol;Acc:MGI:3036287]
100. Cdc14a ENSMUSG00000033502 731 0.938 - 0.938 - - - - CDC14 cell division cycle 14A [Source:MGI Symbol;Acc:MGI:2442676]

There are 342 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA