Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Upf3a

Gene Name Gene ID Reads Annotation
Upf3a ENSMUSG00000038398 402 UPF3 regulator of nonsense transcripts homolog A (yeast) [Source:MGI Symbol;Acc:MGI:1914281]







Genes with expression patterns similar to Upf3a

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Upf3a ENSMUSG00000038398 402 6 1.000 1.000 1.000 1.000 1.000 1.000 UPF3 regulator of nonsense transcripts homolog A (yeast) [Source:MGI Symbol;Acc:MGI:1914281]
2. Nudt19 ENSMUSG00000034875 906 1.655 0.868 0.787 - - - - nudix (nucleoside diphosphate linked moiety X)-type motif 19 [Source:MGI Symbol;Acc:MGI:94203]
3. Coq5 ENSMUSG00000041733 994 1.652 0.831 0.821 - - - - coenzyme Q5 methyltransferase [Source:MGI Symbol;Acc:MGI:1098643]
4. Gm11539 ENSMUSG00000083337 746 1.643 0.708 0.935 - - - - predicted gene 11539 [Source:MGI Symbol;Acc:MGI:3651911]
5. Ralb ENSMUSG00000004451 1130 1.597 0.812 0.785 - - - - v-ral simian leukemia viral oncogene B [Source:MGI Symbol;Acc:MGI:1927244]
6. Snap23 ENSMUSG00000027287 1315 1.571 0.701 0.870 - - - - synaptosomal-associated protein 23 [Source:MGI Symbol;Acc:MGI:109356]
7. Zfp961 ENSMUSG00000052446 869 1.485 0.722 - 0.763 - - - zinc finger protein 961 [Source:MGI Symbol;Acc:MGI:3583954]
8. BC039771 291 0.963 0.963 - - - - - cDNA sequence BC039771
9. Cdk6 ENSMUSG00000040274 355 0.957 0.957 - - - - - cyclin-dependent kinase 6 [Source:MGI Symbol;Acc:MGI:1277162]
10. 4930432K21Rik ENSMUSG00000008129 59 0.957 0.957 - - - - - RIKEN cDNA 4930432K21 gene [Source:MGI Symbol;Acc:MGI:1921916]
11. Camkv ENSMUSG00000032936 71 0.956 0.956 - - - - - CaM kinase-like vesicle-associated [Source:MGI Symbol;Acc:MGI:2384296]
12. Htra2 ENSMUSG00000068329 44 0.956 0.956 - - - - - HtrA serine peptidase 2 [Source:MGI Symbol;Acc:MGI:1928676]
13. Gm16459 ENSMUSG00000084022 255 0.956 0.956 - - - - - predicted gene 16459 [Source:MGI Symbol;Acc:MGI:3644110]
14. Gm15703 ENSMUSG00000083890 47 0.956 0.956 - - - - - predicted gene 15703 [Source:MGI Symbol;Acc:MGI:3783143]
15. Pdik1l ENSMUSG00000050890 697 0.955 0.955 - - - - - PDLIM1 interacting kinase 1 like [Source:MGI Symbol;Acc:MGI:2385213]
16. Fgf5 ENSMUSG00000029337 249 0.955 0.955 - - - - - fibroblast growth factor 5 [Source:MGI Symbol;Acc:MGI:95519]
17. Scrg1 ENSMUSG00000031610 40 0.955 0.955 - - - - - scrapie responsive gene 1 [Source:MGI Symbol;Acc:MGI:1328308]
18. Hist1h4k ENSMUSG00000064288 71 0.955 0.955 - - - - - histone cluster 1, H4k [Source:MGI Symbol;Acc:MGI:2448439]
19. Ptma-ps1 ENSMUSG00000095331 29 0.955 0.955 - - - - - prothymosin alpha, pseudogene 1 [Source:MGI Symbol;Acc:MGI:3644252]
20. Gm12029 ENSMUSG00000081820 26 0.955 0.955 - - - - - predicted gene 12029 [Source:MGI Symbol;Acc:MGI:3651192]
21. Gm11217 ENSMUSG00000085032 29 0.955 0.955 - - - - - predicted gene 11217 [Source:MGI Symbol;Acc:MGI:3651042]
22. Fahd2a ENSMUSG00000027371 222 0.955 0.955 - - - - - fumarylacetoacetate hydrolase domain containing 2A [Source:MGI Symbol;Acc:MGI:1915376]
23. Ccdc146 ENSMUSG00000064280 65 0.955 0.955 - - - - - coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
24. Nr2c2ap ENSMUSG00000071078 241 0.955 0.955 - - - - - nuclear receptor 2C2-associated protein [Source:MGI Symbol;Acc:MGI:1922942]
25. Gm14760 ENSMUSG00000081221 37 0.954 0.954 - - - - - predicted gene 14760 [Source:MGI Symbol;Acc:MGI:3709612]
26. Slc27a6 ENSMUSG00000024600 60 0.954 0.954 - - - - - solute carrier family 27 (fatty acid transporter), member 6 [Source:MGI Symbol;Acc:MGI:3036230]
27. Gm15696 ENSMUSG00000083853 35 0.954 0.954 - - - - - predicted gene 15696 [Source:MGI Symbol;Acc:MGI:3783137]
28. RP24-289J12.1 RP24-289J12.1 254 0.954 0.954 - - - - -
29. Zfp354b ENSMUSG00000020335 56 0.954 0.954 - - - - - zinc finger protein 354B [Source:MGI Symbol;Acc:MGI:1351476]
30. Ikzf4 ENSMUSG00000002578 522 0.953 0.953 - - - - - IKAROS family zinc finger 4 [Source:MGI Symbol;Acc:MGI:1343139]
31. Gm24854 ENSMUSG00000088650 314 0.952 0.952 - - - - - predicted gene, 24854 [Source:MGI Symbol;Acc:MGI:5454631]
32. Lipg ENSMUSG00000053846 221 0.952 0.952 - - - - - lipase, endothelial [Source:MGI Symbol;Acc:MGI:1341803]
33. Asap3 ENSMUSG00000036995 98 0.952 0.952 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 3 [Source:MGI Symbol;Acc:MGI:2684986]
34. Lmln ENSMUSG00000022802 160 0.951 0.951 - - - - - leishmanolysin-like (metallopeptidase M8 family) [Source:MGI Symbol;Acc:MGI:2444736]
35. Ogg1 ENSMUSG00000030271 242 0.951 0.951 - - - - - 8-oxoguanine DNA-glycosylase 1 [Source:MGI Symbol;Acc:MGI:1097693]
36. Tceal6 ENSMUSG00000031409 119 0.951 0.951 - - - - - transcription elongation factor A (SII)-like 6 [Source:MGI Symbol;Acc:MGI:1923939]
37. Gm27010 ENSMUSG00000098183 452 0.951 0.951 - - - - - predicted gene, 27010 [Source:MGI Symbol;Acc:MGI:5504125]
38. Vps8 ENSMUSG00000033653 284 0.949 0.949 - - - - - VPS8 CORVET complex subunit [Source:MGI Symbol;Acc:MGI:2146407]
39. Tnip1 ENSMUSG00000020400 414 0.949 0.949 - - - - - TNFAIP3 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1926194]
40. Polh ENSMUSG00000023953 65 0.947 0.947 - - - - - polymerase (DNA directed), eta (RAD 30 related) [Source:MGI Symbol;Acc:MGI:1891457]
41. Mgat4a ENSMUSG00000026110 296 0.947 0.947 - - - - - mannoside acetylglucosaminyltransferase 4, isoenzyme A [Source:MGI Symbol;Acc:MGI:2662992]
42. Brox ENSMUSG00000046836 1657 0.945 0.945 - - - - - BRO1 domain and CAAX motif containing [Source:MGI Symbol;Acc:MGI:1918928]
43. Ndfip1 ENSMUSG00000024425 231 0.944 0.944 - - - - - Nedd4 family interacting protein 1 [Source:MGI Symbol;Acc:MGI:1929601]
44. Tfb2m ENSMUSG00000026492 253 0.944 0.944 - - - - - transcription factor B2, mitochondrial [Source:MGI Symbol;Acc:MGI:107937]
45. Pnpla2 ENSMUSG00000025509 905 0.944 0.944 - - - - - patatin-like phospholipase domain containing 2 [Source:MGI Symbol;Acc:MGI:1914103]
46. Gm20492 ENSMUSG00000092593 105 0.943 0.943 - - - - - predicted gene 20492 [Source:MGI Symbol;Acc:MGI:5141957]
47. Spats2l ENSMUSG00000038305 220 0.942 0.942 - - - - - spermatogenesis associated, serine-rich 2-like [Source:MGI Symbol;Acc:MGI:1914448]
48. Kirrel ENSMUSG00000041734 243 0.942 0.942 - - - - - kirre like nephrin family adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1891396]
49. Vill ENSMUSG00000038775 297 0.941 0.941 - - - - - villin-like [Source:MGI Symbol;Acc:MGI:1201781]
50. Thsd1 ENSMUSG00000031480 416 0.941 - 0.941 - - - - thrombospondin, type I, domain 1 [Source:MGI Symbol;Acc:MGI:1929096]
51. Nol9 ENSMUSG00000028948 3331 0.939 - 0.939 - - - - nucleolar protein 9 [Source:MGI Symbol;Acc:MGI:1921285]
52. Zfp13 ENSMUSG00000062012 261 0.939 0.939 - - - - - zinc finger protein 13 [Source:MGI Symbol;Acc:MGI:99159]
53. Gm12088 ENSMUSG00000086707 296 0.939 0.939 - - - - - predicted gene 12088 [Source:MGI Symbol;Acc:MGI:3650337]
54. Ccr5 ENSMUSG00000079227 87 0.937 - 0.937 - - - - chemokine (C-C motif) receptor 5 [Source:MGI Symbol;Acc:MGI:107182]
55. Snx21 ENSMUSG00000050373 473 0.937 0.937 - - - - - sorting nexin family member 21 [Source:MGI Symbol;Acc:MGI:1917729]
56. B3gntl1 ENSMUSG00000046605 165 0.936 - 0.936 - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1 [Source:MGI Symbol;Acc:MGI:2441705]
57. 2900053O20Rik 2900053O20Rik 125 0.936 0.936 - - - - -
58. Ninj1 ENSMUSG00000037966 493 0.936 - 0.936 - - - - ninjurin 1 [Source:MGI Symbol;Acc:MGI:1196617]
59. Gm26869 ENSMUSG00000097879 104 0.935 - 0.935 - - - - predicted gene, 26869 [Source:MGI Symbol;Acc:MGI:5477363]
60. Abhd14b ENSMUSG00000042073 300 0.935 0.935 - - - - - abhydrolase domain containing 14b [Source:MGI Symbol;Acc:MGI:1923741]
61. Eef1a2 ENSMUSG00000016349 41 0.935 - 0.935 - - - - eukaryotic translation elongation factor 1 alpha 2 [Source:MGI Symbol;Acc:MGI:1096317]
62. Stc2 ENSMUSG00000020303 138 0.934 - 0.934 - - - - stanniocalcin 2 [Source:MGI Symbol;Acc:MGI:1316731]
63. Celf3 ENSMUSG00000028137 141 0.934 - 0.934 - - - - CUGBP, Elav-like family member 3 [Source:MGI Symbol;Acc:MGI:1926034]
64. BC027582 BC027582 61 0.934 - 0.934 - - - -
65. Cebpb ENSMUSG00000056501 245 0.933 0.933 - - - - - CCAAT/enhancer binding protein (C/EBP), beta [Source:MGI Symbol;Acc:MGI:88373]
66. Gm15954 Gm15954 49 0.933 - 0.933 - - - -
67. Slc38a9 ENSMUSG00000047789 646 0.933 0.933 - - - - - solute carrier family 38, member 9 [Source:MGI Symbol;Acc:MGI:1918839]
68. Polg2 ENSMUSG00000020718 273 0.933 0.933 - - - - - polymerase (DNA directed), gamma 2, accessory subunit [Source:MGI Symbol;Acc:MGI:1354947]
69. Ctla2b ENSMUSG00000074874 66 0.932 - 0.932 - - - - cytotoxic T lymphocyte-associated protein 2 beta [Source:MGI Symbol;Acc:MGI:88555]
70. Mtfp1 ENSMUSG00000004748 496 0.932 0.932 - - - - - mitochondrial fission process 1 [Source:MGI Symbol;Acc:MGI:1916686]
71. Bsdc1 ENSMUSG00000040859 234 0.932 0.932 - - - - - BSD domain containing 1 [Source:MGI Symbol;Acc:MGI:1913466]
72. Cradd ENSMUSG00000045867 347 0.932 0.932 - - - - - CASP2 and RIPK1 domain containing adaptor with death domain [Source:MGI Symbol;Acc:MGI:1336168]
73. Fpgs ENSMUSG00000009566 605 0.932 0.932 - - - - - folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
74. Snora23 ENSMUSG00000064451 53 0.932 - 0.932 - - - - small nucleolar RNA, H/ACA box 23 [Source:MGI Symbol;Acc:MGI:3819494]
75. Slc4a4 ENSMUSG00000060961 235 0.931 0.931 - - - - - solute carrier family 4 (anion exchanger), member 4 [Source:MGI Symbol;Acc:MGI:1927555]
76. Gm21917 ENSMUSG00000096111 466 0.931 0.931 - - - - - predicted gene, 21917 [Source:MGI Symbol;Acc:MGI:5434081]
77. Rnasel ENSMUSG00000066800 396 0.931 - 0.931 - - - - ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent) [Source:MGI Symbol;Acc:MGI:1098272]
78. Hspbap1 ENSMUSG00000022849 273 0.931 0.931 - - - - - Hspb associated protein 1 [Source:MGI Symbol;Acc:MGI:1913917]
79. Coprs ENSMUSG00000031458 1554 0.93 0.930 - - - - - coordinator of PRMT5, differentiation stimulator [Source:MGI Symbol;Acc:MGI:1913673]
80. Ddx25 ENSMUSG00000032101 555 0.93 0.930 - - - - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 [Source:MGI Symbol;Acc:MGI:1353582]
81. She ENSMUSG00000046280 1769 0.93 0.930 - - - - - src homology 2 domain-containing transforming protein E [Source:MGI Symbol;Acc:MGI:1099462]
82. Zfp219 ENSMUSG00000049295 199 0.93 0.930 - - - - - zinc finger protein 219 [Source:MGI Symbol;Acc:MGI:1917140]
83. Zfp551 ENSMUSG00000034071 101 0.929 - 0.929 - - - - zinc fingr protein 551 [Source:MGI Symbol;Acc:MGI:3588205]
84. Cgrrf1 ENSMUSG00000055128 994 0.928 - 0.928 - - - - cell growth regulator with ring finger domain 1 [Source:MGI Symbol;Acc:MGI:1916368]
85. Wwc1 ENSMUSG00000018849 410 0.928 - 0.928 - - - - WW, C2 and coiled-coil domain containing 1 [Source:MGI Symbol;Acc:MGI:2388637]
86. Cntrob ENSMUSG00000032782 747 0.927 0.927 - - - - - centrobin, centrosomal BRCA2 interacting protein [Source:MGI Symbol;Acc:MGI:2443290]
87. Klhl6 ENSMUSG00000043008 952 0.927 0.927 - - - - - kelch-like 6 [Source:MGI Symbol;Acc:MGI:2686922]
88. Pls1 ENSMUSG00000049493 175 0.927 - 0.927 - - - - plastin 1 (I-isoform) [Source:MGI Symbol;Acc:MGI:104809]
89. Pld1 ENSMUSG00000027695 229 0.927 - 0.927 - - - - phospholipase D1 [Source:MGI Symbol;Acc:MGI:109585]
90. Mcmdc2 ENSMUSG00000046101 117 0.927 - 0.927 - - - - minichromosome maintenance domain containing 2 [Source:MGI Symbol;Acc:MGI:3045334]
91. Ankrd13c ENSMUSG00000039988 429 0.926 - 0.926 - - - - ankyrin repeat domain 13c [Source:MGI Symbol;Acc:MGI:2139746]
92. Col25a1 ENSMUSG00000058897 866 0.926 0.926 - - - - - collagen, type XXV, alpha 1 [Source:MGI Symbol;Acc:MGI:1924268]
93. Stim1 ENSMUSG00000030987 220 0.926 - 0.926 - - - - stromal interaction molecule 1 [Source:MGI Symbol;Acc:MGI:107476]
94. A930033H14Rik ENSMUSG00000090622 197 0.925 0.925 - - - - - RIKEN cDNA A930033H14 gene [Source:MGI Symbol;Acc:MGI:2444562]
95. Pdia5 ENSMUSG00000022844 1610 0.924 0.924 - - - - - protein disulfide isomerase associated 5 [Source:MGI Symbol;Acc:MGI:1919849]
96. Gm14290 Gm14290 85 0.924 0.924 - - - - -
97. Pycrl ENSMUSG00000022571 5650 0.923 0.923 - - - - - pyrroline-5-carboxylate reductase-like [Source:MGI Symbol;Acc:MGI:1913444]
98. Tmem161b ENSMUSG00000035762 229 0.923 0.923 - - - - - transmembrane protein 161B [Source:MGI Symbol;Acc:MGI:1919995]
99. Leprotl1 ENSMUSG00000031513 1832 0.923 - 0.923 - - - - leptin receptor overlapping transcript-like 1 [Source:MGI Symbol;Acc:MGI:1915442]
100. Mettl7a3 ENSMUSG00000058057 214 0.923 - 0.923 - - - - methyltransferase like 7A3 [Source:MGI Symbol;Acc:MGI:3710670]

There are 515 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA