Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP9X

Gene Name Gene ID Reads Annotation
USP9X ENSGALG00000016236 9419 ubiquitin specific peptidase 9, X-linked, transcript variant X3











Genes with expression patterns similar to USP9X

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP9X ENSGALG00000016236 9419 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 9, X-linked, transcript variant X3
2. PSMD14 ENSGALG00000011128 13335 1.701 - - - - - - 0.999 0.702 - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
3. NUP153 ENSGALG00000012720 8079 1.7 - - - - - - 0.997 - 0.703 - nucleoporin 153 [Source:HGNC Symbol;Acc:HGNC:8062]
4. AKAP12 ENSGALG00000036240 64617 1.686 - - - - - - 0.974 0.712 - - A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
5. ACTR10 ENSGALG00000012041 2752 1.683 - - - - - - - 0.981 - 0.702 actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
6. MT-ND4L MT-ND4L 12537 1.674 - - - - - - - 0.909 0.765 -
7. RABL6 ENSGALG00000030263 1127 1.587 - - - - - - - - 0.832 0.755 RAB, member RAS oncogene family like 6 [Source:HGNC Symbol;Acc:HGNC:24703]
8. HDHD1 HDHD1 2928 1.566 - - - - - - - 0.717 0.849 -
9. PRIM2 ENSGALG00000016278 5160 0.999 - - - - - - 0.999 - - - DNA primase subunit 2 [Source:NCBI gene;Acc:421878]
10. EMC1 ENSGALG00000003969 6876 0.998 - - - - - - 0.998 - - - ER membrane protein complex subunit 1 [Source:NCBI gene;Acc:419470]
11. RNF126 ENSGALG00000042948 4724 0.998 - - - - - - 0.998 - - - ring finger protein 126 [Source:NCBI gene;Acc:420085]
12. KDM4B ENSGALG00000034592 6711 0.998 - - - - - - 0.998 - - - lysine demethylase 4B, transcript variant X8
13. HIBCH ENSGALG00000043307 11990 0.998 - - - - - - 0.998 - - - 3-hydroxyisobutyryl-CoA hydrolase [Source:NCBI gene;Acc:423979]
14. NUP188 ENSGALG00000043394 9288 0.998 - - - - - - 0.998 - - - nucleoporin 188 [Source:NCBI gene;Acc:417198]
15. AMFR ENSGALG00000003107 6560 0.998 - - - - - - 0.998 - - - autocrine motility factor receptor [Source:HGNC Symbol;Acc:HGNC:463]
16. MSH6 ENSGALG00000008957 6396 0.998 - - - - - - 0.998 - - - mutS homolog 6 [Source:HGNC Symbol;Acc:HGNC:7329]
17. RWDD3 ENSGALG00000038421 10909 0.998 - - - - - - 0.998 - - - RWD domain containing 3 [Source:NCBI gene;Acc:424481]
18. SLC12A4 ENSGALG00000034179 5674 0.998 - - - - - - 0.998 - - - solute carrier family 12 member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
19. OAZ2 ENSGALG00000036288 13213 0.998 - - - - - - 0.998 - - - Gallus gallus ornithine decarboxylase antizyme 2 (OAZ2), mRNA. [Source:RefSeq mRNA;Acc:NM_001142862]
20. SP4 ENSGALG00000039454 5597 0.998 - - - - - - 0.998 - - - Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
21. AP1G1 12403 0.998 - - - - - - 0.998 - - - adaptor related protein complex 1 gamma 1 subunit, transcript variant X2
22. NUP133 ENSGALG00000011091 3804 0.998 - - - - - - 0.998 - - - nucleoporin 133 [Source:HGNC Symbol;Acc:HGNC:18016]
23. MIPEP ENSGALG00000017118 8666 0.998 - - - - - - 0.998 - - - mitochondrial intermediate peptidase [Source:HGNC Symbol;Acc:HGNC:7104]
24. CDH3 5050 0.998 - - - - - - 0.998 - - - cadherin 3
25. FBXL21 ENSGALG00000006327 2910 0.997 - - - - - - 0.997 - - - F-box and leucine rich repeat protein 21 [Source:NCBI gene;Acc:416306]
26. IFT57 ENSGALG00000015356 5540 0.997 - - - - - - 0.997 - - - intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
27. ANAPC2 ENSGALG00000008625 8822 0.997 - - - - - - 0.997 - - - anaphase promoting complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:19989]
28. SSR2 ENSGALG00000000764 32190 0.997 - - - - - - 0.997 - - - signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
29. RBPMS_1 ENSGALG00000010291 16146 0.997 - - - - - - 0.997 - - - RNA binding protein, mRNA processing factor [Source:HGNC Symbol;Acc:HGNC:19097]
30. NDUFS5 ENSGALG00000003625 27698 0.997 - - - - - - 0.997 - - - NADH:ubiquinone oxidoreductase subunit S5 [Source:HGNC Symbol;Acc:HGNC:7712]
31. MEX3A ENSGALG00000014016 3692 0.997 - - - - - - 0.997 - - - mex-3 RNA binding family member A [Source:HGNC Symbol;Acc:HGNC:33482]
32. ZNF367 ENSGALG00000012629 3215 0.997 - - - - - - 0.997 - - - zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]
33. SMARCD2 ENSGALG00000029304 11867 0.997 - - - - - - 0.997 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 [Source:HGNC Symbol;Acc:HGNC:11107]
34. SPAG1 ENSGALG00000033254 1370 0.997 - - - - - - 0.997 - - - sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
35. FAM174A ENSGALG00000026203 8369 0.997 - - - - - - 0.997 - - - family with sequence similarity 174 member A [Source:HGNC Symbol;Acc:HGNC:24943]
36. MAMDC2 ENSGALG00000015115 1512 0.997 - - - - - - 0.997 - - - MAM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23673]
37. ZNF384 ENSGALG00000032599 2369 0.997 - - - - - - 0.997 - - - zinc finger protein 384 [Source:NCBI gene;Acc:770350]
38. TCF21 ENSGALG00000029024 8252 0.996 - - - - - - 0.996 - - - transcription factor 21 [Source:NCBI gene;Acc:421697]
39. SPC25 ENSGALG00000010900 14238 0.996 - - - - - - 0.996 - - - SPC25, NDC80 kinetochore complex component [Source:NCBI gene;Acc:424172]
40. NTPCR ENSGALG00000011015 8652 0.996 - - - - - - 0.996 - - - nucleoside-triphosphatase, cancer-related [Source:NCBI gene;Acc:428588]
41. BTBD1 ENSGALG00000006020 14157 0.996 - - - - - - 0.996 - - - BTB domain containing 1 [Source:NCBI gene;Acc:415461]
42. ACVR1 ENSGALG00000037301 6448 0.996 - - - - - - 0.996 - - - activin A receptor type 1 [Source:NCBI gene;Acc:395246]
43. MRPL21 ENSGALG00000004362 20796 0.995 - - - - - - 0.995 - - - mitochondrial ribosomal protein L21 [Source:NCBI gene;Acc:423000]
44. HOXB2 ENSGALG00000025774 5280 0.995 - - - - - - 0.995 - - - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
45. NANS ENSGALG00000015320 10552 0.995 - - - - - - 0.995 - - - N-acetylneuraminate synthase [Source:NCBI gene;Acc:427283]
46. DCAF7 ENSGALG00000000510 8681 0.992 - - - - - - - 0.992 - - DDB1 and CUL4 associated factor 7 [Source:NCBI gene;Acc:771554]
47. HOXA4 ENSGALG00000022622 22327 0.992 - - - - - - 0.992 - - - homeobox A4 [Source:NCBI gene;Acc:395307]
48. NDUFB5 ENSGALG00000009076 32963 0.991 - - - - - - 0.991 - - - NADH:ubiquinone oxidoreductase subunit B5 [Source:NCBI gene;Acc:424978]
49. SDAD1 ENSGALG00000011543 5191 0.99 - - - - - - - 0.990 - - SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]
50. LONP1 ENSGALG00000040492 7133 0.99 - - - - - - - 0.990 - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
51. PPP3CB ENSGALG00000005243 8794 0.99 - - - - - - - 0.990 - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
52. HCFC2 ENSGALG00000029616 4525 0.989 - - - - - - - 0.989 - - host cell factor C2 [Source:HGNC Symbol;Acc:HGNC:24972]
53. NABP1 ENSGALG00000025884 4195 0.988 - - - - - - - 0.988 - - nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]
54. TRNT1 ENSGALG00000017368 11932 0.988 - - - - - - - 0.988 - - tRNA nucleotidyl transferase 1 [Source:HGNC Symbol;Acc:HGNC:17341]
55. PI4KA ENSGALG00000040756 3973 0.988 - - - - - - - 0.988 - - phosphatidylinositol 4-kinase alpha [Source:HGNC Symbol;Acc:HGNC:8983]
56. SYNE2 ENSGALG00000011811 5542 0.987 - - - - - - - 0.987 - - spectrin repeat containing nuclear envelope protein 2 [Source:HGNC Symbol;Acc:HGNC:17084]
57. MFN1 ENSGALG00000041873 4170 0.987 - - - - - - - 0.987 - - mitofusin 1 [Source:NCBI gene;Acc:424973]
58. DHFR ENSGALG00000026757 18478 0.986 - - - - - - - 0.986 - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
59. PDZD11 ENSGALG00000004198 11484 0.985 - - - - - - - 0.985 - - PDZ domain containing 11 [Source:NCBI gene;Acc:422153]
60. UBQLN1 ENSGALG00000012585 5158 0.985 - - - - - - - 0.985 - - ubiquilin 1 [Source:HGNC Symbol;Acc:HGNC:12508]
61. HIC2 ENSGALG00000033416 4051 0.984 - - - - - - - 0.984 - - hypermethylated in cancer 2 [Source:NCBI gene;Acc:416768]
62. DARS ENSGALG00000012355 2887 0.984 - - - - - - - 0.984 - - aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
63. C3H6ORF120 C3H6ORF120 2712 0.984 - - - - - - - 0.984 - -
64. SOCS5 ENSGALG00000010016 1134 0.983 - - - - - - - 0.983 - - suppressor of cytokine signaling 5 [Source:NCBI gene;Acc:428570]
65. ZC3H15 ENSGALG00000041857 19808 0.983 - - - - - - 0.983 - - - zinc finger CCCH-type containing 15 [Source:NCBI gene;Acc:423992]
66. PYURF ENSGALG00000039869 5657 0.983 - - - - - - - 0.983 - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
67. CDC123 ENSGALG00000014038 1418 0.983 - - - - - - - 0.983 - - cell division cycle 123 [Source:HGNC Symbol;Acc:HGNC:16827]
68. EIF3A ENSGALG00000009328 39982 0.983 - - - - - - 0.983 - - - eukaryotic translation initiation factor 3 subunit A [Source:HGNC Symbol;Acc:HGNC:3271]
69. RFWD3 2315 0.982 - - - - - - - 0.982 - - ring finger and WD repeat domain 3
70. DIP2C ENSGALG00000006652 1858 0.982 - - - - - - - 0.982 - - disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
71. RRAGD ENSGALG00000026971 2429 0.982 - - - - - - - 0.982 - - Ras related GTP binding D [Source:HGNC Symbol;Acc:HGNC:19903]
72. CUTC ENSGALG00000037283 2530 0.982 - - - - - - - 0.982 - - cutC copper transporter [Source:NCBI gene;Acc:423829]
73. ERLIN2 ENSGALG00000003092 18251 0.982 - - - - - - 0.982 - - - ER lipid raft associated 2 [Source:HGNC Symbol;Acc:HGNC:1356]
74. NDUFAF2 ENSGALG00000027564 7302 0.982 - - - - - - - 0.982 - - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:NCBI gene;Acc:769549]
75. SNAI1 ENSGALG00000008018 3930 0.981 - - - - - - - 0.981 - - snail family transcriptional repressor 1 [Source:NCBI gene;Acc:396047]
76. WDR47 ENSGALG00000002129 2624 0.981 - - - - - - - 0.981 - - WD repeat domain 47 [Source:HGNC Symbol;Acc:HGNC:29141]
77. ST5 6869 0.981 - - - - - - - 0.981 - - suppression of tumorigenicity 5, transcript variant X1
78. ABL ABL 9532 0.981 - - - - - - - 0.981 - -
79. DACH1 ENSGALG00000037015 5648 0.981 - - - - - - - 0.981 - - dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
80. RGMA ENSGALG00000039173 12874 0.98 - - - - - - - 0.980 - - repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
81. TTC39A ENSGALG00000010540 1025 0.98 - - - - - - - 0.980 - - tetratricopeptide repeat domain 39A [Source:HGNC Symbol;Acc:HGNC:18657]
82. THG1L ENSGALG00000003722 7497 0.98 - - - - - - 0.980 - - - tRNA-histidine guanylyltransferase 1 like [Source:NCBI gene;Acc:416242]
83. TOLLIP ENSGALG00000006697 917 0.98 - - - - - - - 0.980 - - toll interacting protein [Source:NCBI gene;Acc:423099]
84. TMEFF1 ENSGALG00000013212 4222 0.98 - - - - - - - 0.980 - - transmembrane protein with EGF-like and two follistatin-like domains 1
85. LYPLA2 ENSGALG00000004002 3939 0.98 - - - - - - - 0.980 - - lysophospholipase II [Source:NCBI gene;Acc:419685]
86. TP53INP1 ENSGALG00000041353 6890 0.979 - - - - - - - 0.979 - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
87. ENSGALG00000004643 ENSGALG00000004643 2297 0.979 - - - - - - - 0.979 - -
88. PHF12 ENSGALG00000031368 1960 0.979 - - - - - - - 0.979 - - PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
89. GALNT1 ENSGALG00000013135 13583 0.979 - - - - - - - 0.979 - - polypeptide N-acetylgalactosaminyltransferase 1 [Source:NCBI gene;Acc:420955]
90. ZNF639 ENSGALG00000005944 6387 0.979 - - - - - - - 0.979 - - zinc finger protein 639 [Source:NCBI gene;Acc:425280]
91. RP2 ENSGALG00000016728 3291 0.979 - - - - - - - 0.979 - - RP2, ARL3 GTPase activating protein [Source:NCBI gene;Acc:418675]
92. FAM114A1 ENSGALG00000013583 736 0.978 - - - - - - - 0.978 - - family with sequence similarity 114 member A1 [Source:NCBI gene;Acc:426196]
93. DERL3 ENSGALG00000005994 1499 0.978 - - - - - - - 0.978 - - derlin 3 [Source:NCBI gene;Acc:416934]
94. DTD2 ENSGALG00000009978 4322 0.978 - - - - - - - 0.978 - - D-tyrosyl-tRNA deacylase 2 (putative) [Source:HGNC Symbol;Acc:HGNC:20277]
95. NUDCD1 ENSGALG00000040879 2965 0.978 - - - - - - - 0.978 - - NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]
96. ACL ACL 1813 0.978 - - - - - - - 0.978 - -
97. OLFM1 ENSGALG00000002515 1841 0.977 - - - - - - - 0.977 - - olfactomedin 1 [Source:NCBI gene;Acc:395535]
98. C10orf76 C10orf76 2424 0.977 - - - - - - - 0.977 - -
99. USP3 ENSGALG00000003427 1236 0.977 - - - - - - - 0.977 - - ubiquitin specific peptidase 3 [Source:HGNC Symbol;Acc:HGNC:12626]
100. COMMD7 ENSGALG00000006630 11491 0.977 - - - - - - - 0.977 - - COMM domain containing 7 [Source:NCBI gene;Acc:419286]

There are 324 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA