Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP54

Gene Name Gene ID Reads Annotation
USP54 ENSGALG00000005232 2749 ubiquitin specific peptidase 54 [Source:HGNC Symbol;Acc:HGNC:23513]











Genes with expression patterns similar to USP54

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP54 ENSGALG00000005232 2749 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 54 [Source:HGNC Symbol;Acc:HGNC:23513]
2. TMEM135 2283 2.615 - - - - - - 0.907 0.992 0.716 - transmembrane protein 135, transcript variant X4
3. UPK3BL ENSGALG00000001885 1650 1.888 - - - - - - 0.934 0.954 - - uroplakin 3B-like
4. PMPCB ENSGALG00000008280 6357 1.805 - - - - - - 0.822 0.983 - - peptidase, mitochondrial processing beta subunit [Source:NCBI gene;Acc:417718]
5. LPAR1 ENSGALG00000015729 3874 1.784 - - - - - - 0.789 0.995 - - lysophosphatidic acid receptor 1 [Source:NCBI gene;Acc:427339]
6. JARID2 ENSGALG00000012702 4280 1.732 - - - - - - 0.742 0.990 - - jumonji and AT-rich interaction domain containing 2 [Source:NCBI gene;Acc:420839]
7. KIAA1191 ENSGALG00000003370 2599 1.716 - - - - - - 0.722 0.994 - - KIAA1191 [Source:NCBI gene;Acc:416230]
8. RAB35 ENSGALG00000007308 6300 0.996 - - - - - - - 0.996 - - RAB35, member RAS oncogene family [Source:NCBI gene;Acc:416983]
9. ACSBG2 ENSGALG00000001749 1681 0.995 - - - - - - - 0.995 - - acyl-CoA synthetase bubblegum family member 2 [Source:NCBI gene;Acc:420090]
10. APC ENSGALG00000000220 1266 0.995 - - - - - - - 0.995 - - APC, WNT signaling pathway regulator, transcript variant X12
11. NPHP3 ENSGALG00000034586 1465 0.995 - - - - - - - 0.995 - - nephrocystin 3, transcript variant X1
12. IRF2BPL ENSGALG00000041616 2835 0.995 - - - - - - - 0.995 - - interferon regulatory factor 2 binding protein like [Source:HGNC Symbol;Acc:HGNC:14282]
13. USP25 ENSGALG00000015693 2567 0.995 - - - - - - - 0.995 - - ubiquitin specific peptidase 25 [Source:HGNC Symbol;Acc:HGNC:12624]
14. RGCC ENSGALG00000016954 1282 0.995 - - - - - - - 0.995 - - regulator of cell cycle [Source:HGNC Symbol;Acc:HGNC:20369]
15. RPP38 ENSGALG00000008794 1057 0.995 - - - - - - - 0.995 - - ribonuclease P/MRP subunit p38 [Source:NCBI gene;Acc:420530]
16. CTTN ENSGALG00000007700 709 0.994 - - - - - - - 0.994 - - cortactin [Source:NCBI gene;Acc:396455]
17. C3H6ORF154 C3H6ORF154 1078 0.994 - - - - - - - 0.994 - -
18. CA9 ENSGALG00000021340 1431 0.994 - - - - - - - 0.994 - - carbonic anhydrase 9 [Source:HGNC Symbol;Acc:HGNC:1383]
19. OXSR1 ENSGALG00000005979 2905 0.994 - - - - - - - 0.994 - - oxidative stress responsive 1
20. MSC ENSGALG00000037777 1109 0.994 - - - - - - - 0.994 - - musculin [Source:HGNC Symbol;Acc:HGNC:7321]
21. MAN2A2 ENSGALG00000033790 2717 0.994 - - - - - - - 0.994 - - mannosidase alpha class 2A member 2 [Source:HGNC Symbol;Acc:HGNC:6825]
22. SLC16A2 ENSGALG00000007748 446 0.994 - - - - - - - 0.994 - - Gallus gallus solute carrier family 16 member 2 (SLC16A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321737]
23. HES5 ENSGALG00000001141 6514 0.994 - - - - - - - 0.994 - - hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
24. TMF1 ENSGALG00000013408 3344 0.994 - - - - - - - 0.994 - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
25. TBC1D32 ENSGALG00000014876 681 0.994 - - - - - - - 0.994 - - TBC1 domain family member 32 [Source:HGNC Symbol;Acc:HGNC:21485]
26. AP1S2 ENSGALG00000016551 421 0.994 - - - - - - - 0.994 - - adaptor related protein complex 1 subunit sigma 2 [Source:NCBI gene;Acc:418621]
27. RAB9A ENSGALG00000016579 3262 0.994 - - - - - - - 0.994 - - RAB9A, member RAS oncogene family [Source:NCBI gene;Acc:418635]
28. SLC38A11 ENSGALG00000011052 386 0.994 - - - - - - - 0.994 - - solute carrier family 38 member 11 [Source:HGNC Symbol;Acc:HGNC:26836]
29. DFFA ENSGALG00000002820 2046 0.994 - - - - - - - 0.994 - - DNA fragmentation factor subunit alpha [Source:HGNC Symbol;Acc:HGNC:2772]
30. ENSGALG00000012564 ENSGALG00000012564 426 0.994 - - - - - - - 0.994 - -
31. GOLGA1 ENSGALG00000001025 334 0.994 - - - - - - - 0.994 - - golgin A1 [Source:HGNC Symbol;Acc:HGNC:4424]
32. CCM2 ENSGALG00000005612 323 0.993 - - - - - - - 0.993 - - CCM2 scaffold protein [Source:NCBI gene;Acc:420410]
33. EIF2A ENSGALG00000010401 2201 0.993 - - - - - - - 0.993 - - eukaryotic translation initiation factor 2A [Source:NCBI gene;Acc:425042]
34. MSANTD1 ENSGALG00000015628 154 0.993 - - - - - - - 0.993 - - Myb/SANT DNA binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:33741]
35. LONRF2 ENSGALG00000016768 193 0.993 - - - - - - - 0.993 - - LON peptidase N-terminal domain and ring finger 2 [Source:HGNC Symbol;Acc:HGNC:24788]
36. PIGG ENSGALG00000015349 314 0.993 - - - - - - - 0.993 - - phosphatidylinositol glycan anchor biosynthesis class G [Source:HGNC Symbol;Acc:HGNC:25985]
37. ITPR1 ENSGALG00000008294 1226 0.993 - - - - - - - 0.993 - - inositol 1,4,5-trisphosphate receptor type 1 [Source:NCBI gene;Acc:395412]
38. HSBP1 ENSGALG00000043039 2365 0.992 - - - - - - - 0.992 - - heat shock factor binding protein 1 [Source:NCBI gene;Acc:415813]
39. BET1 ENSGALG00000024485 2451 0.992 - - - - - - - 0.992 - - Bet1 golgi vesicular membrane trafficking protein [Source:NCBI gene;Acc:420563]
40. UTP20 ENSGALG00000011643 3012 0.992 - - - - - - - 0.992 - - UTP20, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:17897]
41. ATG13 ENSGALG00000008347 7374 0.991 - - - - - - - 0.991 - - autophagy related 13 [Source:HGNC Symbol;Acc:HGNC:29091]
42. TATDN1 ENSGALG00000041072 1585 0.991 - - - - - - - 0.991 - - TatD DNase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24220]
43. BFAR ENSGALG00000003111 1778 0.99 - - - - - - - 0.990 - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
44. GCN1L1 GCN1L1 4601 0.989 - - - - - - - 0.989 - -
45. WDFY1 ENSGALG00000005158 2512 0.989 - - - - - - - 0.989 - - WD repeat and FYVE domain containing 1 [Source:NCBI gene;Acc:424806]
46. FBXO28 ENSGALG00000009331 2871 0.988 - - - - - - - 0.988 - - F-box protein 28 [Source:HGNC Symbol;Acc:HGNC:29046]
47. MGAT4B ENSGALG00000005924 2663 0.987 - - - - - - - 0.987 - - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [Source:HGNC Symbol;Acc:HGNC:7048]
48. TMEM168 ENSGALG00000009443 2452 0.986 - - - - - - - 0.986 - - transmembrane protein 168, transcript variant X1
49. KLF5 ENSGALG00000016927 1080 0.985 - - - - - - - 0.985 - - Kruppel like factor 5 [Source:HGNC Symbol;Acc:HGNC:6349]
50. SFRP2 ENSGALG00000009241 4716 0.984 - - - - - - - 0.984 - - secreted frizzled related protein 2 [Source:NCBI gene;Acc:395546]
51. HSD17B2 ENSGALG00000005467 275 0.984 - - - - - - - 0.984 - - hydroxysteroid 17-beta dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:5211]
52. CDC7 ENSGALG00000006051 3996 0.982 - - - - - - - 0.982 - - cell division cycle 7 [Source:HGNC Symbol;Acc:HGNC:1745]
53. UBR2 ENSGALG00000009906 7717 0.981 - - - - - - - 0.981 - - ubiquitin protein ligase E3 component n-recognin 2 [Source:HGNC Symbol;Acc:HGNC:21289]
54. OSR2 ENSGALG00000037695 2010 0.981 - - - - - - - 0.981 - - odd-skipped related transciption factor 2 [Source:NCBI gene;Acc:771523]
55. AFAP1L2 ENSGALG00000008999 1305 0.98 - - - - - - - 0.980 - - actin filament associated protein 1 like 2 [Source:HGNC Symbol;Acc:HGNC:25901]
56. COPG2 ENSGALG00000008144 4542 0.98 - - - - - - - 0.980 - - coatomer protein complex subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:2237]
57. NFU1 ENSGALG00000030200 6882 0.979 - - - - - - - 0.979 - - NFU1 iron-sulfur cluster scaffold [Source:NCBI gene;Acc:419513]
58. EMG1 ENSGALG00000014568 8102 0.977 - - - - - - - 0.977 - - EMG1, N1-specific pseudouridine methyltransferase [Source:NCBI gene;Acc:418292]
59. SIGMAR1 ENSGALG00000028996 12267 0.976 - - - - - - - 0.976 - - sigma non-opioid intracellular receptor 1 [Source:NCBI gene;Acc:100859748]
60. CXorf56 ENSGALG00000008652 7848 0.976 - - - - - - - 0.976 - - chromosome X open reading frame 56 [Source:HGNC Symbol;Acc:HGNC:26239]
61. MYBBP1A ENSGALG00000001363 10331 0.975 - - - - - - - 0.975 - - MYB binding protein 1a [Source:HGNC Symbol;Acc:HGNC:7546]
62. ACOT13 ENSGALG00000013632 5550 0.975 - - - - - - - 0.975 - - acyl-CoA thioesterase 13 [Source:HGNC Symbol;Acc:HGNC:20999]
63. AP3S1 ENSGALG00000002341 12388 0.969 - - - - - - - 0.969 - - adaptor related protein complex 3 sigma 1 subunit [Source:NCBI gene;Acc:427389]
64. CDC23 ENSGALG00000007610 11945 0.968 - - - - - - - 0.968 - - cell division cycle 23 [Source:HGNC Symbol;Acc:HGNC:1724]
65. TGS1 ENSGALG00000015340 5897 0.966 - - - - - - - 0.966 - - trimethylguanosine synthase 1 [Source:NCBI gene;Acc:421126]
66. HECTD1 ENSGALG00000009946 1946 0.962 - - - - - - - 0.962 - - HECT domain E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:20157]
67. DDX47 ENSGALG00000011794 4255 0.958 - - - - - - - 0.958 - - DEAD-box helicase 47 [Source:NCBI gene;Acc:417959]
68. LYPD6B ENSGALG00000028759 831 0.958 - - - - - - - 0.958 - - LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
69. WDR36 ENSGALG00000000247 11277 0.957 - - - - - - - 0.957 - - WD repeat domain 36 [Source:NCBI gene;Acc:415609]
70. PGAP2 ENSGALG00000027762 2583 0.956 - - - - - - 0.956 - - - post-GPI attachment to proteins 2 [Source:HGNC Symbol;Acc:HGNC:17893]
71. LMAN2 ENSGALG00000033232 11740 0.955 - - - - - - - 0.955 - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
72. WDR11 ENSGALG00000035013 3393 0.955 - - - - - - - 0.955 - - WD repeat domain 11 [Source:HGNC Symbol;Acc:HGNC:13831]
73. LATS1 ENSGALG00000012386 3455 0.953 - - - - - - - 0.953 - - large tumor suppressor kinase 1 [Source:HGNC Symbol;Acc:HGNC:6514]
74. BPTF ENSGALG00000038222 7521 0.951 - - - - - - - 0.951 - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
75. CYP51A1 ENSGALG00000009365 6996 0.949 - - - - - - - 0.949 - - cytochrome P450 family 51 subfamily A member 1 [Source:NCBI gene;Acc:420548]
76. CEPT1 ENSGALG00000000142 4219 0.949 - - - - - - - 0.949 - - choline/ethanolamine phosphotransferase 1 [Source:NCBI gene;Acc:421152]
77. DOCK7 6385 0.946 - - - - - - - 0.946 - - dedicator of cytokinesis 7, transcript variant X3
78. MRPS36 ENSGALG00000014789 7584 0.944 - - - - - - - 0.944 - - mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:HGNC:16631]
79. CEP290 ENSGALG00000011177 1559 0.943 - - - - - - 0.943 - - - centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
80. MSL3 ENSGALG00000041433 2957 0.943 - - - - - - 0.943 - - - MSL complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:7370]
81. FAM49B ENSGALG00000036490 7984 0.943 - - - - - - - 0.943 - - family with sequence similarity 49 member B [Source:HGNC Symbol;Acc:HGNC:25216]
82. TM2D3 ENSGALG00000026271 2566 0.941 - - - - - - 0.941 - - - TM2 domain containing 3 [Source:NCBI gene;Acc:415390]
83. FAM193A ENSGALG00000015667 3075 0.939 - - - - - - 0.939 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
84. RPN2 ENSGALG00000003815 18864 0.939 - - - - - - - 0.939 - - ribophorin II [Source:NCBI gene;Acc:419177]
85. ENSGALG00000013233 ENSGALG00000013233 3265 0.939 - - - - - - 0.939 - - -
86. SUGP1 ENSGALG00000042132 2771 0.938 - - - - - - 0.938 - - - SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:428349]
87. COPS8 ENSGALG00000033385 10166 0.938 - - - - - - 0.938 - - - COP9 signalosome subunit 8 [Source:NCBI gene;Acc:424020]
88. CCNL1 ENSGALG00000009699 1033 0.938 - - - - - - 0.938 - - - cyclin L1 [Source:HGNC Symbol;Acc:HGNC:20569]
89. PLCE1 ENSGALG00000039528 151 0.938 - - - - - - 0.938 - - - phospholipase C epsilon 1
90. RNF20 ENSGALG00000015548 7199 0.937 - - - - - - 0.937 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
91. SRPK1 ENSGALG00000037546 1849 0.937 - - - - - - 0.937 - - - SRSF protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:11305]
92. FAM162A ENSGALG00000007378 8290 0.936 - - - - - - - 0.936 - - family with sequence similarity 162 member A [Source:HGNC Symbol;Acc:HGNC:17865]
93. TPR ENSGALG00000005105 2924 0.935 - - - - - - 0.935 - - - translocated promoter region, nuclear basket protein [Source:HGNC Symbol;Acc:HGNC:12017]
94. EIF3I ENSGALG00000003337 28832 0.935 - - - - - - 0.935 - - - eukaryotic translation initiation factor 3 subunit I [Source:NCBI gene;Acc:419653]
95. TM9SF4 ENSGALG00000006568 567 0.935 - - - - - - 0.935 - - - transmembrane 9 superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:30797]
96. MED30 ENSGALG00000030862 7163 0.935 - - - - - - - 0.935 - - mediator complex subunit 30 [Source:NCBI gene;Acc:420284]
97. INTS7 ENSGALG00000009843 2395 0.934 - - - - - - 0.934 - - - integrator complex subunit 7 [Source:NCBI gene;Acc:421374]
98. HESX1 ENSGALG00000005506 203 0.934 - - - - - - 0.934 - - - HESX homeobox 1 [Source:NCBI gene;Acc:395864]
99. MBNL2 ENSGALG00000016890 3162 0.933 - - - - - - 0.933 - - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
100. FAM183A 242 0.932 - - - - - - 0.932 - - - family with sequence similarity 183 member A, transcript variant 2

There are 361 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA