Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP42

Gene Name Gene ID Reads Annotation
USP42 ENSGALG00000003378 1392 ubiquitin specific peptidase 42 [Source:HGNC Symbol;Acc:HGNC:20068]











Genes with expression patterns similar to USP42

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP42 ENSGALG00000003378 1392 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 42 [Source:HGNC Symbol;Acc:HGNC:20068]
2. MYCBP2 ENSGALG00000016915 2374 1.556 - - - - - - 0.749 - 0.807 - MYC binding protein 2, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:HGNC:23386]
3. TDRD1 ENSGALG00000046180 612 1 - - - - - - - 1.000 - - tudor domain containing 1 [Source:HGNC Symbol;Acc:HGNC:11712]
4. PRRX2 ENSGALG00000028236 1990 1 - - - - - - - 1.000 - - paired related homeobox 2 [Source:NCBI gene;Acc:396314]
5. ENSGALG00000028413 ENSGALG00000028413 551 1 - - - - - - - 1.000 - -
6. TNFRSF21 ENSGALG00000016719 2762 1 - - - - - - - 1.000 - - TNF receptor superfamily member 21 [Source:NCBI gene;Acc:422062]
7. TMEM69 ENSGALG00000010279 716 1 - - - - - - - 1.000 - - transmembrane protein 69 [Source:HGNC Symbol;Acc:HGNC:28035]
8. VEGFC ENSGALG00000010847 2197 1 - - - - - - - 1.000 - - vascular endothelial growth factor C [Source:HGNC Symbol;Acc:HGNC:12682]
9. CREB1 ENSGALG00000008494 2219 1 - - - - - - - 1.000 - - cAMP responsive element binding protein 1 [Source:NCBI gene;Acc:395099]
10. USP30 ENSGALG00000040265 2000 1 - - - - - - - 1.000 - - ubiquitin specific peptidase 30 [Source:HGNC Symbol;Acc:HGNC:20065]
11. GNA12 ENSGALG00000004368 692 1 - - - - - - - 1.000 - - G protein subunit alpha 12 [Source:HGNC Symbol;Acc:HGNC:4380]
12. STAMBP ENSGALG00000042555 1362 1 - - - - - - - 1.000 - - STAM binding protein [Source:HGNC Symbol;Acc:HGNC:16950]
13. C9orf89 C9orf89 3056 1 - - - - - - - 1.000 - -
14. RRBP1 ENSGALG00000008676 5376 0.999 - - - - - - - 0.999 - - ribosome binding protein 1 [Source:NCBI gene;Acc:396414]
15. SIN3A ENSGALG00000001644 1141 0.999 - - - - - - - 0.999 - - SIN3 transcription regulator family member A [Source:NCBI gene;Acc:415307]
16. SLBP ENSGALG00000015712 5586 0.999 - - - - - - - 0.999 - - stem-loop binding protein [Source:NCBI gene;Acc:422902]
17. CTU2 4818 0.999 - - - - - - - 0.999 - - cytosolic thiouridylase subunit 2, transcript variant X3
18. ZNF462 ENSGALG00000015451 12653 0.998 - - - - - - - 0.998 - - zinc finger protein 462 [Source:HGNC Symbol;Acc:HGNC:21684]
19. SLC52A3 ENSGALG00000006194 3952 0.998 - - - - - - - 0.998 - - solute carrier family 52 member 3 [Source:HGNC Symbol;Acc:HGNC:16187]
20. VPS36 ENSGALG00000017026 3658 0.998 - - - - - - - 0.998 - - vacuolar protein sorting 36 homolog [Source:HGNC Symbol;Acc:HGNC:20312]
21. PPAT ENSGALG00000013728 7563 0.997 - - - - - - - 0.997 - - phosphoribosyl pyrophosphate amidotransferase [Source:NCBI gene;Acc:422743]
22. GYG1 ENSGALG00000035535 6311 0.997 - - - - - - - 0.997 - - glycogenin 1 [Source:NCBI gene;Acc:425050]
23. CWC22 ENSGALG00000009001 5984 0.997 - - - - - - - 0.997 - - CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
24. PHAX ENSGALG00000014691 8114 0.997 - - - - - - - 0.997 - - phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:427124]
25. ADAR ENSGALG00000021475 6004 0.997 - - - - - - - 0.997 - - adenosine deaminase, RNA specific [Source:HGNC Symbol;Acc:HGNC:225]
26. FAT1 ENSGALG00000013579 6030 0.996 - - - - - - - 0.996 - - FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
27. INTS2 ENSGALG00000005269 6966 0.996 - - - - - - - 0.996 - - integrator complex subunit 2 [Source:NCBI gene;Acc:417640]
28. KLHDC2 ENSGALG00000012244 12903 0.994 - - - - - - - 0.994 - - kelch domain containing 2 [Source:NCBI gene;Acc:423569]
29. LMO7 ENSGALG00000016920 3809 0.994 - - - - - - - 0.994 - - LIM domain 7 [Source:HGNC Symbol;Acc:HGNC:6646]
30. PTK7 ENSGALG00000008609 8081 0.994 - - - - - - - 0.994 - - protein tyrosine kinase 7 (inactive) [Source:NCBI gene;Acc:421257]
31. PDCD6 ENSGALG00000013400 7611 0.992 - - - - - - - 0.992 - - programmed cell death 6 [Source:HGNC Symbol;Acc:HGNC:8765]
32. MAP4K3 ENSGALG00000039720 5124 0.982 - - - - - - - 0.982 - - mitogen-activated protein kinase kinase kinase kinase 3, transcript variant X10
33. NAA30 ENSGALG00000012098 4681 0.98 - - - - - - - 0.980 - - N(alpha)-acetyltransferase 30, NatC catalytic subunit [Source:HGNC Symbol;Acc:HGNC:19844]
34. WDFY3 10775 0.98 - - - - - - - 0.980 - - WD repeat and FYVE domain containing 3, transcript variant X7
35. LAMTOR2 ENSGALG00000029881 35356 0.978 - - - - - - - 0.978 - - late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 [Source:HGNC Symbol;Acc:HGNC:29796]
36. NSUN4 ENSGALG00000010360 3567 0.962 - - - - - - - 0.962 - - NOP2/Sun RNA methyltransferase family member 4 [Source:NCBI gene;Acc:424613]
37. CPSF4 ENSGALG00000004714 14353 0.961 - - - - - - - 0.961 - - cleavage and polyadenylation specific factor 4 [Source:NCBI gene;Acc:416494]
38. C11orf57 C11orf57 4971 0.961 - - - - - - - 0.961 - -
39. SPATA20 ENSGALG00000006857 3506 0.961 - - - - - - - 0.961 - - spermatogenesis associated 20 [Source:HGNC Symbol;Acc:HGNC:26125]
40. ACTR6 ENSGALG00000040976 31271 0.96 - - - - - - - 0.960 - - ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
41. BMP4 ENSGALG00000012429 4306 0.956 - - - - - - - 0.956 - - bone morphogenetic protein 4 [Source:NCBI gene;Acc:396165]
42. TIMM23B ENSGALG00000002089 8122 0.953 - - - - - - - 0.953 - - translocase of inner mitochondrial membrane 23 homolog B
43. MCM6 ENSGALG00000012348 12523 0.951 - - - - - - - 0.951 - - minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
44. CSNK2A1 ENSGALG00000006197 41409 0.947 - - - - - - - 0.947 - - casein kinase 2 alpha 1 [Source:NCBI gene;Acc:432370]
45. NCOA5 ENSGALG00000007009 299 0.943 - - - - - - 0.943 - - - nuclear receptor coactivator 5 [Source:HGNC Symbol;Acc:HGNC:15909]
46. MYBL2 ENSGALG00000003503 15875 0.942 - - - - - - - 0.942 - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
47. RPL7L1 ENSGALG00000011974 20292 0.942 - - - - - - - 0.942 - - ribosomal protein L7 like 1 [Source:NCBI gene;Acc:422676]
48. MED6 ENSGALG00000029743 9414 0.941 - - - - - - - 0.941 - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
49. FARP1 ENSGALG00000016886 13132 0.938 - - - - - - - 0.938 - - FERM, ARH/RhoGEF and pleckstrin domain protein 1 [Source:NCBI gene;Acc:418781]
50. PDCL3 ENSGALG00000016772 14897 0.937 - - - - - - - 0.937 - - phosducin like 3 [Source:NCBI gene;Acc:418709]
51. ANO6 ENSGALG00000009638 470 0.936 - - - - - - 0.936 - - - anoctamin 6 [Source:HGNC Symbol;Acc:HGNC:25240]
52. ZNF367 ENSGALG00000012629 3215 0.936 - - - - - - - 0.936 - - zinc finger protein 367 [Source:HGNC Symbol;Acc:HGNC:18320]
53. DHCR24 ENSGALG00000010798 3963 0.936 - - - - - - - 0.936 - - 24-dehydrocholesterol reductase [Source:NCBI gene;Acc:424661]
54. RNF170 ENSGALG00000015386 296 0.932 - - - - - - 0.932 - - - ring finger protein 170 [Source:NCBI gene;Acc:427296]
55. HSPA12A ENSGALG00000009248 7783 0.931 - - - - - - - 0.931 - - heat shock protein family A (Hsp70) member 12A [Source:HGNC Symbol;Acc:HGNC:19022]
56. LAPTM4A ENSGALG00000016479 15973 0.926 - - - - - - - 0.926 - - lysosomal protein transmembrane 4 alpha [Source:NCBI gene;Acc:421959]
57. THRAP3 ENSGALG00000002144 21958 0.925 - - - - - - - 0.925 - - thyroid hormone receptor associated protein 3 [Source:NCBI gene;Acc:419623]
58. MGST1 ENSGALG00000013098 17632 0.925 - - - - - - - 0.925 - - microsomal glutathione S-transferase 1 [Source:NCBI gene;Acc:418178]
59. PTPN21 ENSGALG00000010616 129 0.917 - - - - - - 0.917 - - - protein tyrosine phosphatase, non-receptor type 21 [Source:HGNC Symbol;Acc:HGNC:9651]
60. PANX1 ENSGALG00000039751 70 0.917 - - - - - - 0.917 - - - pannexin 1 [Source:HGNC Symbol;Acc:HGNC:8599]
61. CHST9 ENSGALG00000019489 21 0.915 - - - - - - 0.915 - - - carbohydrate sulfotransferase 9 [Source:HGNC Symbol;Acc:HGNC:19898]
62. FAM46C 13 0.915 - - - - - - 0.915 - - - family with sequence similarity 46 member C
63. MAP3K19 ENSGALG00000028457 17 0.915 - - - - - - 0.915 - - - mitogen-activated protein kinase kinase kinase 19 [Source:HGNC Symbol;Acc:HGNC:26249]
64. CBLN1 ENSGALG00000042664 15 0.915 - - - - - - 0.915 - - - cerebellin 1 precursor [Source:HGNC Symbol;Acc:HGNC:1543]
65. MBL2 ENSGALG00000002507 17 0.915 - - - - - - 0.915 - - - mannose binding lectin 2 [Source:NCBI gene;Acc:374267]
66. LOC112532477 ENSGALG00000027520 40 0.913 - - - - - - 0.913 - - - fibrinogen-like protein 1-like protein
67. EFCAB7 ENSGALG00000010998 13 0.912 - - - - - - 0.912 - - - EF-hand calcium binding domain 7 [Source:HGNC Symbol;Acc:HGNC:29379]
68. HN1L HN1L 247 0.912 - - - - - - 0.912 - - -
69. DERL1 ENSGALG00000033950 15074 0.908 - - - - - - - 0.908 - - derlin 1 [Source:NCBI gene;Acc:420350]
70. SLC16A14 ENSGALG00000002897 157 0.908 - - - - - - 0.908 - - - solute carrier family 16 member 14 [Source:HGNC Symbol;Acc:HGNC:26417]
71. ADAP2 ENSGALG00000003319 134 0.907 - - - - - - 0.907 - - - ArfGAP with dual PH domains 2 [Source:HGNC Symbol;Acc:HGNC:16487]
72. KIAA1244 KIAA1244 62 0.906 - - - - - - 0.906 - - -
73. FOXRED1 ENSGALG00000046347 4176 0.904 - - - - - - 0.904 - - - FAD dependent oxidoreductase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26927]
74. LYRM1 ENSGALG00000002273 1523 0.903 - - - - - - 0.903 - - - LYR motif containing 1 [Source:NCBI gene;Acc:427003]
75. ARHGAP12 ENSGALG00000007254 479 0.903 - - - - - - 0.903 - - - Rho GTPase activating protein 12 [Source:HGNC Symbol;Acc:HGNC:16348]
76. FAM69A ENSGALG00000005918 157 0.903 - - - - - - 0.903 - - - family with sequence similarity 69 member A, transcript variant X4
77. MTOR ENSGALG00000003339 328 0.902 - - - - - - 0.902 - - - mechanistic target of rapamycin kinase [Source:HGNC Symbol;Acc:HGNC:3942]
78. SCTR ENSGALG00000012106 49 0.902 - - - - - - 0.902 - - - secretin receptor [Source:NCBI gene;Acc:770943]
79. CXADR ENSGALG00000015701 96 0.901 - - - - - - 0.901 - - - coxsackie virus and adenovirus receptor, transcript variant X2
80. TAF15 ENSGALG00000002060 12320 0.9 - - - - - - - 0.900 - - TATA-box binding protein associated factor 15 [Source:HGNC Symbol;Acc:HGNC:11547]
81. SYT8 ENSGALG00000006602 369 0.9 - - - - - - 0.900 - - - synaptotagmin 8 [Source:HGNC Symbol;Acc:HGNC:19264]
82. AFG3L2 ENSGALG00000013853 1138 0.897 - - - - - - 0.897 - - - AFG3 like matrix AAA peptidase subunit 2 [Source:HGNC Symbol;Acc:HGNC:315]
83. LOC419074 ENSGALG00000017336 1885 0.892 - - - - - - 0.892 - - - F-box/WD repeat-containing protein 7-like, transcript variant X3
84. TP73 ENSGALG00000001006 335 0.892 - - - - - - 0.892 - - - tumor protein p73 [Source:HGNC Symbol;Acc:HGNC:12003]
85. TMEM199 ENSGALG00000023757 10781 0.891 - - - - - - - 0.891 - - transmembrane protein 199 [Source:HGNC Symbol;Acc:HGNC:18085]
86. GLOD4 ENSGALG00000027245 1532 0.891 - - - - - - 0.891 - - - glyoxalase domain containing 4 [Source:NCBI gene;Acc:101750166]
87. ASH1L ENSGALG00000014638 803 0.887 - - - - - - 0.887 - - - ASH1 like histone lysine methyltransferase [Source:HGNC Symbol;Acc:HGNC:19088]
88. CAT-1 CAT-1 115 0.887 - - - - - - 0.887 - - -
89. TAP1 ENSGALG00000035075 54 0.887 - - - - - - 0.887 - - - transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) [Source:NCBI gene;Acc:427727]
90. WDR35 157 0.886 - - - - - - 0.886 - - - WD repeat domain 35, transcript variant X1
91. PLK4 ENSGALG00000010195 514 0.884 - - - - - - 0.884 - - - polo like kinase 4 [Source:HGNC Symbol;Acc:HGNC:11397]
92. ZFYVE16 ENSGALG00000015576 287 0.881 - - - - - - 0.881 - - - zinc finger FYVE-type containing 16, transcript variant X3
93. CEP112 ENSGALG00000034989 123 0.88 - - - - - - 0.880 - - - centrosomal protein 112 [Source:NCBI gene;Acc:101749632]
94. LONRF1 ENSGALG00000013725 1508 0.88 - - - - - - 0.880 - - - LON peptidase N-terminal domain and ring finger 1 [Source:HGNC Symbol;Acc:HGNC:26302]
95. LOC769139 ENSGALG00000026754 753 0.876 - - - - - - 0.876 - - - feather keratin 1-like, transcript variant X2
96. VWDE ENSGALG00000042443 160 0.875 - - - - - - 0.875 - - - von Willebrand factor D and EGF domains [Source:HGNC Symbol;Acc:HGNC:21897]
97. FBXO9 ENSGALG00000016320 9600 0.875 - - - - - - - 0.875 - - F-box protein 9 [Source:NCBI gene;Acc:421895]
98. C12H3ORF19 C12H3ORF19 1278 0.875 - - - - - - 0.875 - - -
99. C8orf34 ENSGALG00000034561 286 0.873 - - - - - - 0.873 - - - chromosome 8 open reading frame 34 [Source:HGNC Symbol;Acc:HGNC:30905]
100. TFB1M ENSGALG00000013647 84 0.873 - - - - - - 0.873 - - - transcription factor B1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:17037]

There are 204 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA