Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP40

Gene Name Gene ID Reads Annotation
USP40 ENSGALG00000004228 1137 ubiquitin specific peptidase 40 [Source:NCBI gene;Acc:100859211]











Genes with expression patterns similar to USP40

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP40 ENSGALG00000004228 1137 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 40 [Source:NCBI gene;Acc:100859211]
2. COL6A1 ENSGALG00000005974 1991 1.606 - - 0.898 - - - 0.708 - - - collagen type VI alpha 1 chain [Source:NCBI gene;Acc:396000]
3. GPR107 ENSGALG00000004052 3392 1.534 - - 0.800 - - - 0.734 - - - G protein-coupled receptor 107 [Source:NCBI gene;Acc:417186]
4. LGALS3 ENSGALG00000012173 3306 0.97 - - 0.970 - - - - - - - galectin 3 [Source:NCBI gene;Acc:373917]
5. YLPM1 671 0.967 - - 0.967 - - - - - - - YLP motif containing 1
6. POMC ENSGALG00000016600 99 0.965 - - 0.965 - - - - - - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
7. GRIK3 ENSGALG00000002098 111 0.965 - - 0.965 - - - - - - - glutamate ionotropic receptor kainate type subunit 3 [Source:HGNC Symbol;Acc:HGNC:4581]
8. ITPR1 ENSGALG00000008294 1226 0.965 - - 0.965 - - - - - - - inositol 1,4,5-trisphosphate receptor type 1 [Source:NCBI gene;Acc:395412]
9. RHOC ENSGALG00000001569 53 0.964 - - 0.964 - - - - - - - ras homolog family member C [Source:NCBI gene;Acc:395869]
10. KIAA0195 KIAA0195 48 0.964 - - 0.964 - - - - - - -
11. ACOT9 ENSGALG00000016351 330 0.964 - - 0.964 - - - - - - - acyl-CoA thioesterase 9 [Source:NCBI gene;Acc:418600]
12. PLEKHG5 ENSGALG00000027476 42 0.964 - - 0.964 - - - - - - - pleckstrin homology and RhoGEF domain containing G5 [Source:HGNC Symbol;Acc:HGNC:29105]
13. AP3M1 ENSGALG00000005070 712 0.962 - - 0.962 - - - - - - - adaptor related protein complex 3 subunit mu 1 [Source:NCBI gene;Acc:423736]
14. ENSGALG00000023180 ENSGALG00000023180 83 0.961 - - 0.961 - - - - - - -
15. PKP4 ENSGALG00000012561 3087 0.961 - - 0.961 - - - - - - - plakophilin 4 [Source:NCBI gene;Acc:424328]
16. MGMT ENSGALG00000042949 53 0.961 - - 0.961 - - - - - - - O-6-methylguanine-DNA methyltransferase [Source:HGNC Symbol;Acc:HGNC:7059]
17. MT1 MT1 218 0.96 - - 0.960 - - - - - - -
18. ADAMTS2 ENSGALG00000032974 141 0.958 - - 0.958 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 2 [Source:HGNC Symbol;Acc:HGNC:218]
19. NCAPD3 ENSGALG00000001491 221 0.958 - - 0.958 - - - - - - - non-SMC condensin II complex subunit D3, transcript variant X3
20. SORCS1 ENSGALG00000008465 468 0.958 - - 0.958 - - - - - - - sortilin related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
21. GOLGA2 ENSGALG00000004881 677 0.957 - - 0.957 - - - - - - - golgin A2, transcript variant X7
22. CASP1 ENSGALG00000001049 1067 0.956 - - 0.956 - - - - - - - caspase 1, transcript variant X2
23. CCDC25 ENSGALG00000016586 351 0.954 - - 0.954 - - - - - - - coiled-coil domain containing 25 [Source:HGNC Symbol;Acc:HGNC:25591]
24. INTS9 ENSGALG00000016631 742 0.954 - - 0.954 - - - - - - - integrator complex subunit 9 [Source:NCBI gene;Acc:422023]
25. TMEM38B ENSGALG00000027472 2465 0.953 - - 0.953 - - - - - - - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]
26. KIAA0930 ENSGALG00000014226 1243 0.949 - - 0.949 - - - - - - - KIAA0930 [Source:HGNC Symbol;Acc:HGNC:1314]
27. RPUSD1 ENSGALG00000005315 651 0.949 - - 0.949 - - - - - - - RNA pseudouridylate synthase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:14173]
28. ENTPD5 ENSGALG00000010202 69 0.948 - - 0.948 - - - - - - - ectonucleoside triphosphate diphosphohydrolase 5 [Source:HGNC Symbol;Acc:HGNC:3367]
29. SULT2B1L1 ENSGALG00000023472 569 0.948 - - 0.948 - - - - - - - sulfotransferase family cytosolic 2B member 1-like 1
30. LRP2 ENSGALG00000010858 363 0.948 - - 0.948 - - - - - - - LDL receptor related protein 2 [Source:HGNC Symbol;Acc:HGNC:6694]
31. FBXO34 ENSGALG00000032563 656 0.948 - - 0.948 - - - - - - - F-box protein 34 [Source:NCBI gene;Acc:423554]
32. IP6K1 ENSGALG00000002510 827 0.947 - - 0.947 - - - - - - - inositol hexakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:18360]
33. MAN1A1 ENSGALG00000014878 1061 0.947 - - 0.947 - - - - - - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
34. C19H17ORF85 C19H17ORF85 2538 0.947 - - 0.947 - - - - - - -
35. ATP2B2 ENSGALG00000030908 584 0.947 - - 0.947 - - - - - - - ATPase plasma membrane Ca2+ transporting 2 [Source:HGNC Symbol;Acc:HGNC:815]
36. TSEN2 ENSGALG00000004981 1929 0.946 - - 0.946 - - - - - - - tRNA splicing endonuclease subunit 2 [Source:NCBI gene;Acc:415965]
37. C5H14ORF166 C5H14ORF166 24176 0.945 - - 0.945 - - - - - - -
38. TMEM97 ENSGALG00000005702 2037 0.945 - - 0.945 - - - - - - - transmembrane protein 97 [Source:HGNC Symbol;Acc:HGNC:28106]
39. ZNF423 ENSGALG00000003891 103 0.945 - - 0.945 - - - - - - - zinc finger protein 423 [Source:HGNC Symbol;Acc:HGNC:16762]
40. LZIC ENSGALG00000002616 9052 0.943 - - 0.943 - - - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
41. FRMD3 ENSGALG00000012577 999 0.943 - - 0.943 - - - - - - - FERM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24125]
42. ZEB2 ENSGALG00000040465 315 0.942 - - 0.942 - - - - - - - Gallus gallus zinc finger E-box binding homeobox 2 (ZEB2), mRNA. [Source:RefSeq mRNA;Acc:NM_001318466]
43. EIF2AK2 ENSGALG00000010560 749 0.942 - - 0.942 - - - - - - - eukaryotic translation initiation factor 2 alpha kinase 2 [Source:NCBI gene;Acc:395147]
44. C8H1ORF52 C8H1ORF52 118 0.942 - - 0.942 - - - - - - -
45. CXorf30 CXorf30 172 0.941 - - 0.941 - - - - - - -
46. MAK16 ENSGALG00000001663 7455 0.941 - - 0.941 - - - - - - - MAK16 homolog [Source:HGNC Symbol;Acc:HGNC:13703]
47. Sep-02 Sep-02 206 0.941 - - 0.941 - - - - - - -
48. TRIM37 ENSGALG00000005084 4036 0.941 - - 0.941 - - - - - - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
49. WDR89 ENSGALG00000011827 1481 0.94 - - 0.940 - - - - - - - WD repeat domain 89 [Source:NCBI gene;Acc:423510]
50. MYO18A ENSGALG00000003741 1023 0.94 - - 0.940 - - - - - - - myosin XVIIIA [Source:HGNC Symbol;Acc:HGNC:31104]
51. WDR11 ENSGALG00000035013 3393 0.939 - - 0.939 - - - - - - - WD repeat domain 11 [Source:HGNC Symbol;Acc:HGNC:13831]
52. LHFP 167 0.939 - - 0.939 - - - - - - - lipoma HMGIC fusion partner
53. LYPD6B ENSGALG00000028759 831 0.938 - - 0.938 - - - - - - - LY6/PLAUR domain containing 6B [Source:HGNC Symbol;Acc:HGNC:27018]
54. GNMT ENSGALG00000043290 3288 0.937 - - 0.937 - - - - - - - glycine N-methyltransferase [Source:HGNC Symbol;Acc:HGNC:4415]
55. GBGT1 ENSGALG00000003340 399 0.934 - - 0.934 - - - - - - - globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) [Source:NCBI gene;Acc:417163]
56. DAPK3 ENSGALG00000037733 6215 0.933 - - 0.933 - - - - - - - death-associated protein kinase 3, transcript variant X2
57. EXTL2 ENSGALG00000027984 808 0.932 - - 0.932 - - - - - - - exostosin like glycosyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:3516]
58. LRR1 ENSGALG00000012230 1062 0.932 - - 0.932 - - - - - - - leucine rich repeat protein 1 [Source:HGNC Symbol;Acc:HGNC:19742]
59. DZIP1 ENSGALG00000016895 681 0.93 - - 0.930 - - - - - - - DAZ interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:20908]
60. VRTN ENSGALG00000010232 692 0.928 - - 0.928 - - - - - - - vertebrae development associated [Source:HGNC Symbol;Acc:HGNC:20223]
61. SLC4A4 ENSGALG00000031105 534 0.928 - - 0.928 - - - - - - - solute carrier family 4 member 4 [Source:HGNC Symbol;Acc:HGNC:11030]
62. TRIM45 ENSGALG00000014818 1258 0.928 - - 0.928 - - - - - - - tripartite motif containing 45 [Source:HGNC Symbol;Acc:HGNC:19018]
63. MBIP ENSGALG00000010096 2476 0.927 - - 0.927 - - - - - - - MAP3K12 binding inhibitory protein 1 [Source:HGNC Symbol;Acc:HGNC:20427]
64. ENSGALG00000028359 ENSGALG00000028359 479 0.926 - - 0.926 - - - - - - -
65. ATG10 ENSGALG00000027714 1100 0.926 - - 0.926 - - - - - - - autophagy related 10 [Source:HGNC Symbol;Acc:HGNC:20315]
66. DLX5 ENSGALG00000009129 1395 0.926 - - 0.926 - - - - - - - distal-less homeobox 5 [Source:NCBI gene;Acc:373969]
67. AXIN1 ENSGALG00000029402 2802 0.925 - - 0.925 - - - - - - - axin 1 [Source:NCBI gene;Acc:395786]
68. PCP4 ENSGALG00000022819 880 0.925 - - 0.925 - - - - - - - Purkinje cell protein 4 [Source:NCBI gene;Acc:771220]
69. SDCBP ENSGALG00000015436 1228 0.924 - - 0.924 - - - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
70. RFNG ENSGALG00000002841 1643 0.924 - - 0.924 - - - - - - - RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395789]
71. BMP2 ENSGALG00000029301 379 0.924 - - 0.924 - - - - - - - bone morphogenetic protein 2 [Source:NCBI gene;Acc:378779]
72. TMEM128 ENSGALG00000014992 6567 0.924 - - 0.924 - - - - - - - transmembrane protein 128 [Source:NCBI gene;Acc:422845]
73. BCCIP ENSGALG00000006617 13291 0.924 - - 0.924 - - - - - - - BRCA2 and CDKN1A interacting protein [Source:HGNC Symbol;Acc:HGNC:978]
74. B3GNT7 ENSGALG00000007701 929 0.923 - - 0.923 - - - - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
75. ZNF276 ENSGALG00000000513 2410 0.922 - - 0.922 - - - - - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
76. FBF1 ENSGALG00000002179 1738 0.922 - - 0.922 - - - - - - - Fas binding factor 1 [Source:NCBI gene;Acc:770159]
77. DDX18 ENSGALG00000012147 12463 0.92 - - 0.920 - - - - - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
78. KLHL15 ENSGALG00000016345 1638 0.92 - - 0.920 - - - - - - - kelch like family member 15 [Source:NCBI gene;Acc:418598]
79. FOPNL ENSGALG00000006532 2922 0.92 - - 0.920 - - - - - - - FGFR1OP N-terminal like [Source:NCBI gene;Acc:416598]
80. FURIN ENSGALG00000008341 2609 0.92 - - 0.920 - - - - - - - furin, paired basic amino acid cleaving enzyme [Source:NCBI gene;Acc:395457]
81. ISCU ENSGALG00000004869 6852 0.92 - - 0.920 - - - - - - - iron-sulfur cluster assembly enzyme [Source:HGNC Symbol;Acc:HGNC:29882]
82. ALG14 ENSGALG00000005583 2008 0.92 - - 0.920 - - - - - - - ALG14, UDP-N-acetylglucosaminyltransferase subunit [Source:NCBI gene;Acc:424484]
83. AMMECR1L ENSGALG00000026728 2134 0.919 - - 0.919 - - - - - - - AMMECR1 like [Source:HGNC Symbol;Acc:HGNC:28658]
84. FAM134A 1600 0.919 - - 0.919 - - - - - - - family with sequence similarity 134 member A
85. TXNDC12 ENSGALG00000010569 13822 0.918 - - 0.918 - - - - - - - thioredoxin domain containing 12 [Source:NCBI gene;Acc:772208]
86. RAB3B ENSGALG00000010567 894 0.918 - - 0.918 - - - - - - - RAB3B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9778]
87. SYBU ENSGALG00000036527 1221 0.916 - - 0.916 - - - - - - - syntabulin [Source:HGNC Symbol;Acc:HGNC:26011]
88. TMEM200C ENSGALG00000030210 1434 0.915 - - 0.915 - - - - - - - transmembrane protein 200C [Source:HGNC Symbol;Acc:HGNC:37208]
89. MSRA ENSGALG00000028032 2607 0.915 - - 0.915 - - - - - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
90. HYI ENSGALG00000033943 2489 0.913 - - 0.913 - - - - - - - hydroxypyruvate isomerase (putative) [Source:NCBI gene;Acc:424567]
91. SPON2 ENSGALG00000038433 1240 0.913 - - 0.913 - - - - - - - spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
92. MPG ENSGALG00000028691 1874 0.913 - - 0.913 - - - - - - - N-methylpurine DNA glycosylase [Source:HGNC Symbol;Acc:HGNC:7211]
93. CDV3 ENSGALG00000032316 693 0.912 - - 0.912 - - - - - - - CDV3 homolog [Source:NCBI gene;Acc:420693]
94. WBSCR17 581 0.91 - - 0.910 - - - - - - - Williams-Beuren syndrome chromosome region 17, transcript variant X1
95. RUFY2 1442 0.91 - - 0.910 - - - - - - - RUN and FYVE domain containing 2, transcript variant X1
96. OSGEPL1 ENSGALG00000037727 1879 0.91 - - 0.910 - - - - - - - O-sialoglycoprotein endopeptidase like 1 [Source:HGNC Symbol;Acc:HGNC:23075]
97. TSN ENSGALG00000011652 905 0.909 - - 0.909 - - - - - - - translin [Source:NCBI gene;Acc:395955]
98. XPC ENSGALG00000006357 2484 0.908 - - 0.908 - - - - - - - XPC complex subunit, DNA damage recognition and repair factor [Source:HGNC Symbol;Acc:HGNC:12816]
99. METTL13 ENSGALG00000003206 1503 0.908 - - 0.908 - - - - - - - methyltransferase like 13 [Source:HGNC Symbol;Acc:HGNC:24248]
100. PSMC5 ENSGALG00000000349 21346 0.908 - - 0.908 - - - - - - - proteasome 26S subunit, ATPase 5 [Source:NCBI gene;Acc:428274]

There are 312 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA