Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP3

Gene Name Gene ID Reads Annotation
USP3 ENSGALG00000003427 1236 ubiquitin specific peptidase 3 [Source:HGNC Symbol;Acc:HGNC:12626]











Genes with expression patterns similar to USP3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP3 ENSGALG00000003427 1236 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 ubiquitin specific peptidase 3 [Source:HGNC Symbol;Acc:HGNC:12626]
2. ACL ACL 1813 1 - - - - - - - 1.000 - -
3. SLC43A3 ENSGALG00000020479 1332 0.999 - - - - - - - 0.999 - - solute carrier family 43 member 3 [Source:HGNC Symbol;Acc:HGNC:17466]
4. WDR47 ENSGALG00000002129 2624 0.999 - - - - - - - 0.999 - - WD repeat domain 47 [Source:HGNC Symbol;Acc:HGNC:29141]
5. C10orf76 C10orf76 2424 0.999 - - - - - - - 0.999 - -
6. FAM114A1 ENSGALG00000013583 736 0.999 - - - - - - - 0.999 - - family with sequence similarity 114 member A1 [Source:NCBI gene;Acc:426196]
7. DERL3 ENSGALG00000005994 1499 0.999 - - - - - - - 0.999 - - derlin 3 [Source:NCBI gene;Acc:416934]
8. OLFM1 ENSGALG00000002515 1841 0.999 - - - - - - - 0.999 - - olfactomedin 1 [Source:NCBI gene;Acc:395535]
9. TMEFF1 ENSGALG00000013212 4222 0.999 - - - - - - - 0.999 - - transmembrane protein with EGF-like and two follistatin-like domains 1
10. TOLLIP ENSGALG00000006697 917 0.999 - - - - - - - 0.999 - - toll interacting protein [Source:NCBI gene;Acc:423099]
11. CDC123 ENSGALG00000014038 1418 0.999 - - - - - - - 0.999 - - cell division cycle 123 [Source:HGNC Symbol;Acc:HGNC:16827]
12. NUDCD1 ENSGALG00000040879 2965 0.999 - - - - - - - 0.999 - - NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]
13. DIP2C ENSGALG00000006652 1858 0.998 - - - - - - - 0.998 - - disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
14. DARS ENSGALG00000012355 2887 0.998 - - - - - - - 0.998 - - aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
15. PHF12 ENSGALG00000031368 1960 0.998 - - - - - - - 0.998 - - PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
16. ENSGALG00000004643 ENSGALG00000004643 2297 0.998 - - - - - - - 0.998 - -
17. LYPLA2 ENSGALG00000004002 3939 0.998 - - - - - - - 0.998 - - lysophospholipase II [Source:NCBI gene;Acc:419685]
18. TTC39A ENSGALG00000010540 1025 0.998 - - - - - - - 0.998 - - tetratricopeptide repeat domain 39A [Source:HGNC Symbol;Acc:HGNC:18657]
19. ACTR10 ENSGALG00000012041 2752 0.998 - - - - - - - 0.998 - - actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
20. DACH1 ENSGALG00000037015 5648 0.998 - - - - - - - 0.998 - - dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
21. RGMA ENSGALG00000039173 12874 0.998 - - - - - - - 0.998 - - repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
22. CUTC ENSGALG00000037283 2530 0.998 - - - - - - - 0.998 - - cutC copper transporter [Source:NCBI gene;Acc:423829]
23. RRAGD ENSGALG00000026971 2429 0.998 - - - - - - - 0.998 - - Ras related GTP binding D [Source:HGNC Symbol;Acc:HGNC:19903]
24. RFWD3 2315 0.997 - - - - - - - 0.997 - - ring finger and WD repeat domain 3
25. SNAI1 ENSGALG00000008018 3930 0.997 - - - - - - - 0.997 - - snail family transcriptional repressor 1 [Source:NCBI gene;Acc:396047]
26. SOCS5 ENSGALG00000010016 1134 0.997 - - - - - - - 0.997 - - suppressor of cytokine signaling 5 [Source:NCBI gene;Acc:428570]
27. HIC2 ENSGALG00000033416 4051 0.997 - - - - - - - 0.997 - - hypermethylated in cancer 2 [Source:NCBI gene;Acc:416768]
28. C3H6ORF120 C3H6ORF120 2712 0.997 - - - - - - - 0.997 - -
29. RP2 ENSGALG00000016728 3291 0.996 - - - - - - - 0.996 - - RP2, ARL3 GTPase activating protein [Source:NCBI gene;Acc:418675]
30. UBQLN1 ENSGALG00000012585 5158 0.996 - - - - - - - 0.996 - - ubiquilin 1 [Source:HGNC Symbol;Acc:HGNC:12508]
31. PYURF ENSGALG00000039869 5657 0.995 - - - - - - - 0.995 - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
32. DTD2 ENSGALG00000009978 4322 0.995 - - - - - - - 0.995 - - D-tyrosyl-tRNA deacylase 2 (putative) [Source:HGNC Symbol;Acc:HGNC:20277]
33. PI4KA ENSGALG00000040756 3973 0.995 - - - - - - - 0.995 - - phosphatidylinositol 4-kinase alpha [Source:HGNC Symbol;Acc:HGNC:8983]
34. MFN1 ENSGALG00000041873 4170 0.994 - - - - - - - 0.994 - - mitofusin 1 [Source:NCBI gene;Acc:424973]
35. NDUFAF2 ENSGALG00000027564 7302 0.994 - - - - - - - 0.994 - - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:NCBI gene;Acc:769549]
36. TRNT1 ENSGALG00000017368 11932 0.993 - - - - - - - 0.993 - - tRNA nucleotidyl transferase 1 [Source:HGNC Symbol;Acc:HGNC:17341]
37. HCFC2 ENSGALG00000029616 4525 0.993 - - - - - - - 0.993 - - host cell factor C2 [Source:HGNC Symbol;Acc:HGNC:24972]
38. SDAD1 ENSGALG00000011543 5191 0.992 - - - - - - - 0.992 - - SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]
39. PITX3 ENSGALG00000005613 1518 0.991 - - - - - - - 0.991 - - paired like homeodomain 3
40. LONP1 ENSGALG00000040492 7133 0.991 - - - - - - - 0.991 - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
41. SYNE2 ENSGALG00000011811 5542 0.991 - - - - - - - 0.991 - - spectrin repeat containing nuclear envelope protein 2 [Source:HGNC Symbol;Acc:HGNC:17084]
42. TP53INP1 ENSGALG00000041353 6890 0.991 - - - - - - - 0.991 - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
43. ZNF639 ENSGALG00000005944 6387 0.99 - - - - - - - 0.990 - - zinc finger protein 639 [Source:NCBI gene;Acc:425280]
44. DYRK2 ENSGALG00000009901 3141 0.99 - - - - - - - 0.990 - - dual specificity tyrosine phosphorylation regulated kinase 2 [Source:NCBI gene;Acc:427864]
45. NABP1 ENSGALG00000025884 4195 0.99 - - - - - - - 0.990 - - nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]
46. ZC3H6 ENSGALG00000008269 10353 0.989 - - - - - - - 0.989 - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
47. MICU3 ENSGALG00000013661 1466 0.985 - - - - - - - 0.985 - - mitochondrial calcium uptake family member 3 [Source:HGNC Symbol;Acc:HGNC:27820]
48. PDZD11 ENSGALG00000004198 11484 0.983 - - - - - - - 0.983 - - PDZ domain containing 11 [Source:NCBI gene;Acc:422153]
49. ST5 6869 0.983 - - - - - - - 0.983 - - suppression of tumorigenicity 5, transcript variant X1
50. DCAF7 ENSGALG00000000510 8681 0.981 - - - - - - - 0.981 - - DDB1 and CUL4 associated factor 7 [Source:NCBI gene;Acc:771554]
51. HAPLN1 ENSGALG00000015627 14942 0.979 - - - - - - - 0.979 - - hyaluronan and proteoglycan link protein 1 [Source:NCBI gene;Acc:396475]
52. PPP3CB ENSGALG00000005243 8794 0.978 - - - - - - - 0.978 - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
53. COMMD7 ENSGALG00000006630 11491 0.978 - - - - - - - 0.978 - - COMM domain containing 7 [Source:NCBI gene;Acc:419286]
54. USP9X ENSGALG00000016236 9419 0.977 - - - - - - - 0.977 - - ubiquitin specific peptidase 9, X-linked, transcript variant X3
55. ABL ABL 9532 0.977 - - - - - - - 0.977 - -
56. TFIP11 ENSGALG00000005623 7784 0.973 - - - - - - - 0.973 - - tuftelin interacting protein 11 [Source:NCBI gene;Acc:416909]
57. GALNT1 ENSGALG00000013135 13583 0.971 - - - - - - - 0.971 - - polypeptide N-acetylgalactosaminyltransferase 1 [Source:NCBI gene;Acc:420955]
58. SAMHD1 ENSGALG00000001231 5218 0.971 - - - - - - - 0.971 - - SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 [Source:NCBI gene;Acc:419125]
59. DHFR ENSGALG00000026757 18478 0.968 - - - - - - - 0.968 - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
60. RGL1 ENSGALG00000004728 3004 0.966 - - - - - - - 0.966 - - ral guanine nucleotide dissociation stimulator like 1 [Source:NCBI gene;Acc:424446]
61. TMEM120B ENSGALG00000004254 2819 0.965 - - - - - - - 0.965 - - transmembrane protein 120B [Source:NCBI gene;Acc:416847]
62. APAF1 ENSGALG00000011531 3102 0.959 - - - - - - - 0.959 - - apoptotic peptidase activating factor 1 [Source:HGNC Symbol;Acc:HGNC:576]
63. PPP2R5C ENSGALG00000029996 5759 0.958 - - - - - - - 0.958 - - protein phosphatase 2 regulatory subunit B'gamma [Source:NCBI gene;Acc:423460]
64. GPATCH1 ENSGALG00000004839 6455 0.956 - - - - - - - 0.956 - - G-patch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24658]
65. GPS1 ENSGALG00000002827 8433 0.949 - - - - - - - 0.949 - - G protein pathway suppressor 1 [Source:NCBI gene;Acc:417382]
66. COG7 ENSGALG00000006156 4072 0.947 - - - - - - - 0.947 - - component of oligomeric golgi complex 7 [Source:NCBI gene;Acc:416578]
67. CIAPIN1 ENSGALG00000029268 23036 0.93 - - - - - - - 0.930 - - cytokine induced apoptosis inhibitor 1 [Source:NCBI gene;Acc:415637]
68. PKP2 ENSGALG00000012913 2547 0.928 - - - - - - - 0.928 - - plakophilin 2 [Source:HGNC Symbol;Acc:HGNC:9024]
69. RPF1 ENSGALG00000008796 9809 0.92 - - - - - - - 0.920 - - ribosome production factor 1 homolog
70. MT-ND4L MT-ND4L 12537 0.913 - - - - - - - 0.913 - -
71. MED9 ENSGALG00000031214 10779 0.902 - - - - - - - 0.902 - - mediator complex subunit 9 [Source:NCBI gene;Acc:416506]
72. PTCD3 ENSGALG00000015773 3059 0.9 - - - - - - - 0.900 - - pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:24717]
73. ZCCHC8 ENSGALG00000004486 3201 0.898 - - - - - - - 0.898 - - zinc finger CCHC-type containing 8 [Source:NCBI gene;Acc:416862]
74. NUPL1 NUPL1 8197 0.892 - - - - - - - 0.892 - -
75. PTPLB PTPLB 13107 0.891 - - - - - - - 0.891 - -
76. KCND2 ENSGALG00000009066, ENSGALG00000043515 63 0.881 - - - - - - - - - 0.881 potassium voltage-gated channel subfamily D member 2 [Source:HGNC Symbol;Acc:HGNC:6238]
77. ALG2 ENSGALG00000013573 5229 0.88 - - - - - - - 0.880 - - ALG2, alpha-1,3/1,6-mannosyltransferase [Source:HGNC Symbol;Acc:HGNC:23159]
78. EGLN1 ENSGALG00000041422 11032 0.878 - - - - - - - 0.878 - - egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]
79. RBM25 ENSGALG00000009332 10842 0.872 - - - - - - - 0.872 - - RNA binding motif protein 25 [Source:NCBI gene;Acc:423250]
80. LARP1 ENSGALG00000040109 14808 0.869 - - - - - - - 0.869 - - La ribonucleoprotein domain family member 1 [Source:HGNC Symbol;Acc:HGNC:29531]
81. STAM ENSGALG00000035287 7649 0.869 - - - - - - - 0.869 - - signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
82. MRPL35 ENSGALG00000022950 26070 0.868 - - - - - - - 0.868 - - mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:14489]
83. GGA.31975 GGA.31975 8825 0.864 - - - - - - - 0.864 - -
84. COPB2 ENSGALG00000005357 15208 0.855 - - - - - - - 0.855 - - coatomer protein complex subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:2232]
85. DBNDD2 ENSGALG00000003921 8301 0.855 - - - - - - - 0.855 - - dysbindin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:15881]
86. WTAP ENSGALG00000011660 10811 0.846 - - - - - - - 0.846 - - WT1 associated protein [Source:HGNC Symbol;Acc:HGNC:16846]
87. SF3B1 ENSGALG00000008038 30161 0.844 - - - - - - - 0.844 - - splicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]
88. UBR5 ENSGALG00000031282 12143 0.844 - - - - - - - 0.844 - - ubiquitin protein ligase E3 component n-recognin 5 [Source:HGNC Symbol;Acc:HGNC:16806]
89. SRI ENSGALG00000008985 13865 0.839 - - - - - - - 0.839 - - sorcin [Source:NCBI gene;Acc:420538]
90. EFNB2 ENSGALG00000029175 5664 0.838 - - - - - - - 0.838 - - ephrin B2 [Source:NCBI gene;Acc:395625]
91. gga-mir-1778 ENSGALG00000025181 8765 0.835 - - - - - - - 0.835 - - gga-mir-1778 [Source:miRBase;Acc:MI0007521]
92. NDUFS7 ENSGALG00000009703 19674 0.835 - - - - - - - 0.835 - - NADH:ubiquinone oxidoreductase core subunit S7 [Source:HGNC Symbol;Acc:HGNC:7714]
93. DNAJC19 ENSGALG00000008852 6093 0.833 - - - - - - - 0.833 - - DnaJ heat shock protein family (Hsp40) member C19 [Source:HGNC Symbol;Acc:HGNC:30528]
94. MRPL24 ENSGALG00000030994 24264 0.827 - - - - - - - 0.827 - - mitochondrial ribosomal protein L24 [Source:HGNC Symbol;Acc:HGNC:14037]
95. FGFR2 ENSGALG00000009495 15391 0.823 - - - - - - - 0.823 - - fibroblast growth factor receptor 2 [Source:NCBI gene;Acc:396259]
96. SDHD ENSGALG00000007878 25129 0.821 - - - - - - - 0.821 - - succinate dehydrogenase complex subunit D [Source:NCBI gene;Acc:419793]
97. CIB1 ENSGALG00000008302 13946 0.82 - - - - - - - 0.820 - - calcium and integrin binding 1 [Source:NCBI gene;Acc:770162]
98. SLC9A3R1 ENSGALG00000007650 13053 0.813 - - - - - - - 0.813 - - SLC9A3 regulator 1 [Source:NCBI gene;Acc:422108]
99. EIF3L ENSGALG00000012296 42627 0.808 - - - - - - - 0.808 - - eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
100. ENSGALG00000026622 ENSGALG00000026622 223 0.807 - - - - - - - - - 0.807

There are 58 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA