Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP28

Gene Name Gene ID Reads Annotation
USP28 ENSGALG00000006969 2645 ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]











Genes with expression patterns similar to USP28

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP28 ENSGALG00000006969 2645 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]
2. ITFG1 ENSGALG00000004049 2934 0.943 - - - - - - - 0.943 - - integrin alpha FG-GAP repeat containing 1 [Source:NCBI gene;Acc:415742]
3. BUD13 ENSGALG00000025882 1800 0.939 - - - - - - - 0.939 - - BUD13 homolog [Source:NCBI gene;Acc:428248]
4. SLC19A1 ENSGALG00000030511 1397 0.939 - - - - - - - 0.939 - - solute carrier family 19 member 1 [Source:NCBI gene;Acc:424034]
5. ENTPD4 ENSGALG00000000390 1394 0.938 - - - - - - - 0.938 - - ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]
6. KIAA1009 KIAA1009 1261 0.936 - - - - - - - 0.936 - -
7. ATP1B3 ENSGALG00000002764 1890 0.936 - - - - - - - 0.936 - - ATPase Na+/K+ transporting subunit beta 3 [Source:NCBI gene;Acc:396549]
8. TPM3 ENSGALG00000013537 934 0.935 - - - - - - - 0.935 - - Gallus gallus tropomyosin 3 (TPM3), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352039]
9. SPATA2 ENSGALG00000008026 2040 0.934 - - - - - - - 0.934 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
10. ANGPTL1 ENSGALG00000004290 1922 0.934 - - - - - - - 0.934 - - angiopoietin like 1 [Source:NCBI gene;Acc:770850]
11. HAGHL ENSGALG00000021040 1568 0.933 - - - - - - - 0.933 - - hydroxyacylglutathione hydrolase-like [Source:NCBI gene;Acc:416536]
12. HOOK1 ENSGALG00000010889 1007 0.932 - - - - - - - 0.932 - - hook microtubule tethering protein 1 [Source:NCBI gene;Acc:424675]
13. CLCN5 ENSGALG00000007234 1143 0.931 - - - - - - - 0.931 - - chloride voltage-gated channel 5 [Source:HGNC Symbol;Acc:HGNC:2023]
14. G2E3 ENSGALG00000009907 1754 0.931 - - - - - - - 0.931 - - G2/M-phase specific E3 ubiquitin protein ligase [Source:NCBI gene;Acc:423305]
15. MTIF2 ENSGALG00000031265 2366 0.931 - - - - - - - 0.931 - - mitochondrial translational initiation factor 2 [Source:NCBI gene;Acc:421213]
16. PNN ENSGALG00000010167 6417 0.931 - - - - - - - 0.931 - - pinin, desmosome associated protein [Source:HGNC Symbol;Acc:HGNC:9162]
17. GKAP1 ENSGALG00000012586 2908 0.93 - - - - - - - 0.930 - - G kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:17496]
18. RASA3 ENSGALG00000016817 2146 0.928 - - - - - - - 0.928 - - RAS p21 protein activator 3 [Source:NCBI gene;Acc:418736]
19. SMG8 ENSGALG00000005093 5557 0.928 - - - - - - - 0.928 - - SMG8 nonsense mediated mRNA decay factor
20. MTUS1 ENSGALG00000013615 1040 0.928 - - - - - - - 0.928 - - microtubule associated tumor suppressor 1, transcript variant X4
21. SPATA2L ENSGALG00000044991 463 0.927 - - - - - - - 0.927 - - spermatogenesis associated 2 like [Source:HGNC Symbol;Acc:HGNC:28393]
22. ARNTL2 ENSGALG00000014096 998 0.925 - - - - - - - 0.925 - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:NCBI gene;Acc:373925]
23. NRG1 ENSGALG00000015422 196 0.925 - - - - - - - 0.925 - - neuregulin 1 [Source:NCBI gene;Acc:373906]
24. ASTN2 ENSGALG00000007038 1748 0.924 - - - - - - - 0.924 - - astrotactin 2 [Source:HGNC Symbol;Acc:HGNC:17021]
25. AGRN ENSGALG00000039193 8135 0.923 - - - - - - - 0.923 - - agrin [Source:NCBI gene;Acc:396538]
26. RIMKLB ENSGALG00000040184 281 0.923 - - - - - - - 0.923 - - ribosomal modification protein rimK like family member B [Source:HGNC Symbol;Acc:HGNC:29228]
27. CCDC117 ENSGALG00000005784 185 0.923 - - - - - - - 0.923 - - coiled-coil domain containing 117 [Source:HGNC Symbol;Acc:HGNC:26599]
28. TXNDC11 ENSGALG00000003154 2224 0.923 - - - - - - - 0.923 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
29. RBM46 ENSGALG00000009278 98 0.923 - - - - - - - 0.923 - - RNA binding motif protein 46 [Source:HGNC Symbol;Acc:HGNC:28401]
30. ZNF750 ENSGALG00000001518 151 0.923 - - - - - - - 0.923 - - zinc finger protein 750 [Source:HGNC Symbol;Acc:HGNC:25843]
31. SRR ENSGALG00000003155 93 0.922 - - - - - - - 0.922 - - serine racemase [Source:HGNC Symbol;Acc:HGNC:14398]
32. DMA DMA 1012 0.922 - - - - - - - 0.922 - -
33. APBB2 ENSGALG00000014262 569 0.922 - - - - - - - 0.922 - - amyloid beta precursor protein binding family B member 2 [Source:HGNC Symbol;Acc:HGNC:582]
34. SELENBP1 ENSGALG00000000866 1253 0.921 - - - - - - - 0.921 - - selenium binding protein 1 [Source:NCBI gene;Acc:425664]
35. BRCA1 ENSGALG00000002781 2052 0.921 - - - - - - - 0.921 - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
36. UBN1 ENSGALG00000031416 2848 0.92 - - - - - - - 0.920 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
37. SLC25A28 ENSGALG00000007479 4902 0.919 - - - - - - - 0.919 - - solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]
38. CRABP2 ENSGALG00000029140 559 0.919 - - - - - - - 0.919 - - cellular retinoic acid binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2339]
39. KLF6 ENSGALG00000033178 679 0.919 - - - - - - - 0.919 - - Kruppel like factor 6 [Source:NCBI gene;Acc:420463]
40. LRPAP1 ENSGALG00000015612 3526 0.919 - - - - - - - 0.919 - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
41. CCDC80 ENSGALG00000015193 1387 0.919 - - - - - - - 0.919 - - coiled-coil domain containing 80 [Source:NCBI gene;Acc:395074]
42. TRPC1 ENSGALG00000002639 296 0.919 - - - - - - - 0.919 - - transient receptor potential cation channel subfamily C member 1 [Source:NCBI gene;Acc:424776]
43. ENSGALG00000011233 ENSGALG00000011233 42 0.919 - - - - - - - 0.919 - -
44. RFX7 ENSGALG00000041896 69 0.919 - - - - - - - 0.919 - - regulatory factor X7 [Source:HGNC Symbol;Acc:HGNC:25777]
45. NPAT ENSGALG00000017162 1574 0.918 - - - - - - - 0.918 - - nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896]
46. PAIP1 ENSGALG00000014867 202 0.918 - - - - - - - 0.918 - - poly(A) binding protein interacting protein 1 [Source:NCBI gene;Acc:427195]
47. PPP2R3A ENSGALG00000034512 1091 0.918 - - - - - - - 0.918 - - protein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]
48. MURC 3759 0.917 - - - - - - - 0.917 - - muscle related coiled-coil protein
49. NPR2 ENSGALG00000027630 871 0.916 - - - - - - - 0.916 - - natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]
50. ITFG2 ENSGALG00000014335 1896 0.916 - - - - - - - 0.916 - - integrin alpha FG-GAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:30879]
51. ZBTB18 ENSGALG00000010705 3433 0.915 - - - - - - - 0.915 - - zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
52. SH3TC1 ENSGALG00000015568 484 0.915 - - - - - - - 0.915 - - SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
53. NUDT6 ENSGALG00000011834 1309 0.914 - - - - - - - 0.914 - - nudix hydrolase 6 [Source:HGNC Symbol;Acc:HGNC:8053]
54. GP1BB ENSGALG00000021529 348 0.914 - - - - - - - 0.914 - - glycoprotein Ib platelet subunit beta [Source:HGNC Symbol;Acc:HGNC:4440]
55. ABHD12B ENSGALG00000020342 511 0.913 - - - - - - - 0.913 - - abhydrolase domain containing 12B, transcript variant X2
56. PDZD8 ENSGALG00000029095 1068 0.912 - - - - - - - 0.912 - - PDZ domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26974]
57. EPGN ENSGALG00000010859 187 0.912 - - - - - - - 0.912 - - epithelial mitogen [Source:NCBI gene;Acc:497270]
58. RNASEH1 ENSGALG00000016389 2694 0.912 - - - - - - - 0.912 - - ribonuclease H1 [Source:NCBI gene;Acc:395848]
59. LRIG3 ENSGALG00000009755 6655 0.911 - - - - - - - 0.911 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
60. DOCK10 ENSGALG00000005030 848 0.91 - - - - - - - 0.910 - - dedicator of cytokinesis 10 [Source:HGNC Symbol;Acc:HGNC:23479]
61. ZNF384 ENSGALG00000032599 2369 0.91 - - - - - - - 0.910 - - zinc finger protein 384 [Source:NCBI gene;Acc:770350]
62. PKN3 532 0.91 - - - - - - - 0.910 - - protein kinase N3, transcript variant X2
63. MMP15 ENSGALG00000038758 49988 0.909 - - - - - - - 0.909 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
64. ENSGALG00000021439 ENSGALG00000021439 628 0.908 - - - - - - - 0.908 - -
65. TICAM1 ENSGALG00000026850 723 0.905 - - - - - - - 0.905 - - toll like receptor adaptor molecule 1 [Source:NCBI gene;Acc:100008585]
66. AIP ENSGALG00000040247 4166 0.905 - - - - - - - 0.905 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
67. PCYOX1 ENSGALG00000013878 2200 0.904 - - - - - - - 0.904 - - prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
68. EML1 1941 0.902 - - - - - - - 0.902 - - echinoderm microtubule associated protein like 1, transcript variant X11
69. FGFR1 ENSGALG00000039786 4480 0.902 - - - - - - - 0.902 - - fibroblast growth factor receptor 1 [Source:NCBI gene;Acc:396516]
70. TMEM161A ENSGALG00000025809 2813 0.901 - - - - - - - 0.901 - - transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
71. BACE2 ENSGALG00000034932 1570 0.9 - - - - - - - 0.900 - - beta-secretase 2 [Source:HGNC Symbol;Acc:HGNC:934]
72. KIF21B ENSGALG00000034347 4144 0.899 - - - - - - - 0.899 - - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
73. NDRG3 ENSGALG00000001492 5919 0.898 - - - - - - - 0.898 - - NDRG family member 3 [Source:HGNC Symbol;Acc:HGNC:14462]
74. TTC38 ENSGALG00000014551 1135 0.896 - - - - - - - 0.896 - - tetratricopeptide repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:26082]
75. EFCAB10 ENSGALG00000045949 514 0.894 - - - - - - - 0.894 - - EF-hand calcium binding domain 10 [Source:HGNC Symbol;Acc:HGNC:34531]
76. LIMS1 ENSGALG00000029970 7244 0.893 - - - - - - - 0.893 - - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
77. FBXL8 ENSGALG00000003201 847 0.893 - - - - - - - 0.893 - - F-box and leucine rich repeat protein 8 [Source:NCBI gene;Acc:415701]
78. NPL ENSGALG00000004614 617 0.892 - - - - - - - 0.892 - - N-acetylneuraminate pyruvate lyase [Source:NCBI gene;Acc:429074]
79. MXD4 ENSGALG00000015688 1472 0.892 - - - - - - - 0.892 - - MAX dimerization protein 4 [Source:NCBI gene;Acc:422890]
80. POLR1B ENSGALG00000032273 3845 0.889 - - - - - - - 0.889 - - RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]
81. ENSGALG00000018634 ENSGALG00000018634 414 0.888 - - - - - - - 0.888 - -
82. HDAC1 ENSGALG00000003297 3528 0.887 - - - - - - - 0.887 - - histone deacetylase 1 [Source:NCBI gene;Acc:373961]
83. NCAPH ENSGALG00000032270 2103 0.887 - - - - - - - 0.887 - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]
84. MAOB ENSGALG00000032836 1054 0.885 - - - - - - - 0.885 - - monoamine oxidase B
85. AGGF1 ENSGALG00000004311 3011 0.884 - - - - - - - 0.884 - - angiogenic factor with G-patch and FHA domains 1, transcript variant X1
86. CLMP ENSGALG00000006507 8079 0.881 - - - - - - - 0.881 - - CXADR like membrane protein [Source:HGNC Symbol;Acc:HGNC:24039]
87. VPS13D ENSGALG00000034777 2350 0.877 - - - - - - - 0.877 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
88. GLT8D1 ENSGALG00000001642 4232 0.876 - - - - - - - 0.876 - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
89. DOK5 ENSGALG00000007786 1732 0.875 - - - - - - - 0.875 - - docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
90. RCAN3 ENSGALG00000004282 7778 0.875 - - - - - - - 0.875 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
91. NT5C3B ENSGALG00000003651 5190 0.873 - - - - - - - 0.873 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
92. CCNL2 ENSGALG00000001551 2620 0.87 - - - - - - - 0.870 - - cyclin L2 [Source:NCBI gene;Acc:395124]
93. ERMARD ENSGALG00000011186 1001 0.87 - - - - - - - 0.870 - - ER membrane associated RNA degradation [Source:HGNC Symbol;Acc:HGNC:21056]
94. IBTK ENSGALG00000015864 3154 0.87 - - - - - - - 0.870 - - inhibitor of Bruton tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:17853]
95. PHF2 ENSGALG00000039208 2003 0.869 - - - - - - - 0.869 - - PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
96. TNFRSF1B ENSGALG00000034213 780 0.869 - - - - - - - 0.869 - - TNF receptor superfamily member 1B [Source:NCBI gene;Acc:395083]
97. TCTN2 ENSGALG00000023683 3596 0.865 - - - - - - - 0.865 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
98. HYAL1 ENSGALG00000000785 1778 0.865 - - - - - - - 0.865 - - hyaluronoglucosaminidase 1, transcript variant X3
99. LBP ENSGALG00000006756 1684 0.864 - - - - - - - 0.864 - - lipopolysaccharide binding protein, transcript variant X1
100. ALAS1 3660 0.864 - - - - - - - 0.864 - - 5'-aminolevulinate synthase 1, transcript variant X1

There are 94 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA