Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP18

Gene Name Gene ID Reads Annotation
USP18 ENSGALG00000013057 209 ubiquitin specific peptidase 18, transcript variant X2











Genes with expression patterns similar to USP18

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP18 ENSGALG00000013057 209 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 ubiquitin specific peptidase 18, transcript variant X2
2. S100A13 ENSGALG00000046614 201 1.528 - - 0.800 - - - - 0.728 - - S100 calcium binding protein A13 [Source:HGNC Symbol;Acc:HGNC:10490]
3. SEH1L ENSGALG00000013872 315 0.882 - - 0.882 - - - - - - - SEH1 like nucleoporin [Source:HGNC Symbol;Acc:HGNC:30379]
4. MAP3K21 ENSGALG00000011008 54 0.877 - - 0.877 - - - - - - - mitogen-activated protein kinase kinase kinase 21 [Source:HGNC Symbol;Acc:HGNC:29798]
5. ALPK3 ENSGALG00000037950 54 0.848 - - 0.848 - - - - - - - alpha kinase 3 [Source:HGNC Symbol;Acc:HGNC:17574]
6. CCDC40 ENSGALG00000007042 596 0.84 - - 0.840 - - - - - - - coiled-coil domain containing 40 [Source:HGNC Symbol;Acc:HGNC:26090]
7. RPGR ENSGALG00000036284 186 0.831 - - 0.831 - - - - - - - retinitis pigmentosa GTPase regulator [Source:HGNC Symbol;Acc:HGNC:10295]
8. FAM104A ENSGALG00000026401 162 0.831 - - 0.831 - - - - - - - family with sequence similarity 104 member A [Source:NCBI gene;Acc:417450]
9. JADE3 ENSGALG00000016727 55 0.831 - - 0.831 - - - - - - - jade family PHD finger 3 [Source:HGNC Symbol;Acc:HGNC:22982]
10. PQLC3 ENSGALG00000016449 39 0.811 - - 0.811 - - - - - - - PQ loop repeat containing 3 [Source:HGNC Symbol;Acc:HGNC:28503]
11. PARK2 166 0.798 - - 0.798 - - - - - - - parkin RBR E3 ubiquitin protein ligase
12. TRIM29 ENSGALG00000042360 34 0.798 - - 0.798 - - - - - - - tripartite motif containing 29 [Source:HGNC Symbol;Acc:HGNC:17274]
13. PARP3 ENSGALG00000004517 331 0.792 - - - - - - - 0.792 - - poly(ADP-ribose) polymerase family member 3 [Source:HGNC Symbol;Acc:HGNC:273]
14. ZC3H12B ENSGALG00000039391 39 0.79 - - 0.790 - - - - - - - zinc finger CCCH-type containing 12B [Source:HGNC Symbol;Acc:HGNC:17407]
15. PARP9 ENSGALG00000045511 220 0.788 - - 0.788 - - - - - - - poly(ADP-ribose) polymerase family member 9 [Source:HGNC Symbol;Acc:HGNC:24118]
16. SPATA5L1 ENSGALG00000005682 240 0.783 - - 0.783 - - - - - - - spermatogenesis associated 5 like 1 [Source:HGNC Symbol;Acc:HGNC:28762]
17. MYO3B ENSGALG00000009602 315 0.782 - - 0.782 - - - - - - - myosin IIIB [Source:HGNC Symbol;Acc:HGNC:15576]
18. DNAH17 1389 0.78 - - 0.780 - - - - - - - dynein axonemal heavy chain 17, transcript variant X6
19. RET ENSGALG00000002555 544 0.774 - - - - - - - 0.774 - - ret proto-oncogene [Source:NCBI gene;Acc:396107]
20. ENSGALG00000004951 ENSGALG00000004951 18 0.77 - - 0.770 - - - - - - -
21. CLDN15 ENSGALG00000038964 21 0.764 - - 0.764 - - - - - - - claudin 15, transcript variant X4
22. SGMS2 ENSGALG00000010535 42 0.762 - - 0.762 - - - - - - - sphingomyelin synthase 2 [Source:NCBI gene;Acc:422529]
23. RAB3C ENSGALG00000014726 10 0.762 - - 0.762 - - - - - - - RAB3C, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:30269]
24. TEX33 ENSGALG00000012490 11 0.762 - - 0.762 - - - - - - - testis expressed 33, transcript variant X2
25. MMR1L2 ENSGALG00000028357 7 0.762 - - 0.762 - - - - - - - Gallus gallus macrophage mannose receptor 1-like 2 (MMR1L2), mRNA. [Source:RefSeq mRNA;Acc:NM_001319010]
26. SYT8 ENSGALG00000006602 369 0.762 - - 0.762 - - - - - - - synaptotagmin 8 [Source:HGNC Symbol;Acc:HGNC:19264]
27. ATMIN ENSGALG00000040475 16 0.762 - - 0.762 - - - - - - - ATM interactor [Source:HGNC Symbol;Acc:HGNC:29034]
28. LOC771308 ENSGALG00000000274 7 0.762 - - 0.762 - - - - - - - growth hormone releasing hormone receptor, transcript variant X2
29. ADCYAP1 ENSGALG00000014858 9 0.762 - - 0.762 - - - - - - - adenylate cyclase activating polypeptide 1 [Source:NCBI gene;Acc:408251]
30. AOX1 ENSGALG00000008185 14 0.762 - - 0.762 - - - - - - - aldehyde oxidase 1 [Source:NCBI gene;Acc:424071]
31. OSGIN1 ENSGALG00000003323 7 0.762 - - 0.762 - - - - - - - oxidative stress induced growth inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:30093]
32. ELFN2 ENSGALG00000012446 11 0.76 - - 0.760 - - - - - - - extracellular leucine rich repeat and fibronectin type III domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29396]
33. FAR-2 FAR-2 24 0.759 - - 0.759 - - - - - - -
34. PCDH10 ENSGALG00000009719 483 0.759 - - 0.759 - - - - - - - protocadherin 10 [Source:NCBI gene;Acc:408048]
35. PTPRE ENSGALG00000009823 250 0.754 - - 0.754 - - - - - - - protein tyrosine phosphatase, receptor type E [Source:HGNC Symbol;Acc:HGNC:9669]
36. USP33 ENSGALG00000008974 447 0.754 - - 0.754 - - - - - - - ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
37. SLC4A1AP ENSGALG00000010047 3171 0.751 - - 0.751 - - - - - - - solute carrier family 4 member 1 adaptor protein [Source:HGNC Symbol;Acc:HGNC:13813]
38. SCG2 ENSGALG00000029819 26 0.751 - - 0.751 - - - - - - - secretogranin II [Source:HGNC Symbol;Acc:HGNC:10575]
39. FGF7 ENSGALG00000028158 189 0.751 - - 0.751 - - - - - - - fibroblast growth factor 7 [Source:NCBI gene;Acc:415439]
40. ADAL ENSGALG00000004038 113 0.75 - - - - - - - 0.750 - - adenosine deaminase like [Source:NCBI gene;Acc:415391]
41. C19orf25 551 0.749 - - 0.749 - - - - - - - chromosome 19 open reading frame 25
42. FADS2 ENSGALG00000007178 116 0.747 - - - - - - - 0.747 - - fatty acid desaturase 2 [Source:NCBI gene;Acc:423122]
43. KLHDC3 ENSGALG00000008536 1961 0.747 - - 0.747 - - - - - - - kelch domain containing 3 [Source:HGNC Symbol;Acc:HGNC:20704]
44. CC2D1B ENSGALG00000010619 66 0.746 - - 0.746 - - - - - - - coiled-coil and C2 domain containing 1B [Source:HGNC Symbol;Acc:HGNC:29386]
45. PLCG1 ENSGALG00000003750 2449 0.746 - - 0.746 - - - - - - - phospholipase C gamma 1 [Source:HGNC Symbol;Acc:HGNC:9065]
46. ENPP1 ENSGALG00000034397 278 0.745 - - - - - - 0.745 - - - ectonucleotide pyrophosphatase/phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:3356]
47. SLC38A9 ENSGALG00000014712 16 0.744 - - 0.744 - - - - - - - solute carrier family 38 member 9 [Source:HGNC Symbol;Acc:HGNC:26907]
48. ENSGALG00000026496 ENSGALG00000026496 9 0.744 - - 0.744 - - - - - - -
49. ATP6V0D1 ENSGALG00000002237 13 0.743 - - - - - 0.743 - - - - ATPase H+ transporting V0 subunit d1 [Source:NCBI gene;Acc:415674]
50. PLEKHG4 ENSGALG00000023898 65 0.743 - - 0.743 - - - - - - - pleckstrin homology and RhoGEF domain containing G4 [Source:HGNC Symbol;Acc:HGNC:24501]
51. MAN1B1 ENSGALG00000037375 308 0.743 - - 0.743 - - - - - - - mannosidase alpha class 1B member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
52. SLC4A10 ENSGALG00000030032 56 0.741 - - 0.741 - - - - - - - solute carrier family 4 member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
53. SK2 SK2 74 0.741 - - 0.741 - - - - - - -
54. ENSGALG00000024048 ENSGALG00000024048 50 0.74 - - 0.740 - - - - - - -
55. EVL ENSGALG00000011209 5440 0.737 - - 0.737 - - - - - - - Enah/Vasp-like [Source:NCBI gene;Acc:423453]
56. FASTK ENSGALG00000033058 21 0.737 - - 0.737 - - - - - - - Fas activated serine/threonine kinase
57. AAK1 ENSGALG00000041911 16 0.736 - - - - - - - 0.736 - - AP2 associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:19679]
58. PTPRF ENSGALG00000010053 27 0.736 - - 0.736 - - - - - - - protein tyrosine phosphatase, receptor type F [Source:HGNC Symbol;Acc:HGNC:9670]
59. CNKSR2 ENSGALG00000016391 131 0.734 - - 0.734 - - - - - - - connector enhancer of kinase suppressor of Ras 2, transcript variant X1
60. ADAMTS12 55 0.734 - - 0.734 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 12, transcript variant X2
61. FAM35A 1187 0.733 - - - - - - - 0.733 - - family with sequence similarity 35 member A
62. SLC17A8 ENSGALG00000041122 57 0.732 - - 0.732 - - - - - - - Gallus gallus solute carrier family 17 member 8 (SLC17A8), mRNA. [Source:RefSeq mRNA;Acc:NM_001319029]
63. COL4A2 ENSGALG00000016843 261 0.73 - - 0.730 - - - - - - - collagen type IV alpha 2 chain [Source:NCBI gene;Acc:418752]
64. CTSS ENSGALG00000000775 591 0.729 - - 0.729 - - - - - - - cathepsin S [Source:NCBI gene;Acc:425657]
65. CUTA ENSGALG00000001620 76 0.726 - - - - - - - 0.726 - - cutA divalent cation tolerance homolog
66. BZFP1 ENSGALG00000027546 632 0.726 - - 0.726 - - - - - - - B-locus zinc finger protein 1 [Source:NCBI gene;Acc:396247]
67. PDE6G ENSGALG00000004514 231 0.723 - - 0.723 - - - - - - - phosphodiesterase 6G [Source:NCBI gene;Acc:395091]
68. GPR20 ENSGALG00000041730 1926 0.719 - - 0.719 - - - - - - - G protein-coupled receptor 20 [Source:HGNC Symbol;Acc:HGNC:4475]
69. KCNJ15 ENSGALG00000016055 66 0.718 - - 0.718 - - - - - - - potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
70. FAM3C ENSGALG00000008975 984 0.717 - - - - - - 0.717 - - - family with sequence similarity 3, member C [Source:NCBI gene;Acc:417758]
71. ALOX5 ENSGALG00000005857 73 0.717 - - 0.717 - - - - - - - arachidonate 5-lipoxygenase [Source:HGNC Symbol;Acc:HGNC:435]
72. DERL3 ENSGALG00000005994 1499 0.716 - - - - - - 0.716 - - - derlin 3 [Source:NCBI gene;Acc:416934]
73. NLN ENSGALG00000014769 95 0.715 - - - - - - 0.715 - - - neurolysin [Source:HGNC Symbol;Acc:HGNC:16058]
74. RNF150 ENSGALG00000009865 80 0.714 - - 0.714 - - - - - - - ring finger protein 150 [Source:HGNC Symbol;Acc:HGNC:23138]
75. PDZD7 ENSGALG00000020726 72 0.713 - - 0.713 - - - - - - - PDZ domain containing 7 [Source:HGNC Symbol;Acc:HGNC:26257]
76. MAP7D2 ENSGALG00000016415 31 0.713 - - - - - 0.713 - - - - MAP7 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25899]
77. RNF216 ENSGALG00000004629 84 0.712 - - 0.712 - - - - - - - ring finger protein 216 [Source:HGNC Symbol;Acc:HGNC:21698]
78. MRC1 ENSGALG00000008629 259 0.711 - - - - - - 0.711 - - - Gallus gallus mannose receptor C-type 1 (MRC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001319007]
79. COL24A1 ENSGALG00000006864 161 0.709 - - 0.709 - - - - - - - collagen type XXIV alpha 1 chain, transcript variant X4
80. XK ENSGALG00000016262 60 0.706 - - 0.706 - - - - - - - X-linked Kx blood group [Source:NCBI gene;Acc:427991]
81. MYO10L ENSGALG00000011172 80 0.705 - - - - - - - - - 0.705 myosin-X-like, transcript variant X2
82. DHTKD1 ENSGALG00000003674 300 0.703 - - - - - - - 0.703 - - dehydrogenase E1 and transketolase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:23537]
83. PAQR8 ENSGALG00000016675 85 0.703 - - - - - - - - - 0.703 progestin and adipoQ receptor family member 8 [Source:NCBI gene;Acc:422042]
84. CD44 ENSGALG00000039080 100 0.703 - - 0.703 - - - - - - - CD44 molecule (Indian blood group) [Source:NCBI gene;Acc:395666]
85. TMEM206 ENSGALG00000009822 80 0.701 - - 0.701 - - - - - - - transmembrane protein 206 [Source:HGNC Symbol;Acc:HGNC:25593]
86. GNG11 ENSGALG00000029899 327 0.701 - - 0.701 - - - - - - - G protein subunit gamma 11 [Source:NCBI gene;Acc:771999]
87. RFK ENSGALG00000033558 1364 0.7 - - - - - - - 0.700 - - riboflavin kinase, transcript variant X3
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA