Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP16

Gene Name Gene ID Reads Annotation
USP16 ENSGALG00000015813 6803 ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]











Genes with expression patterns similar to USP16

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP16 ENSGALG00000015813 6803 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 16 [Source:HGNC Symbol;Acc:HGNC:12614]
2. ATRX ENSGALG00000007843 34172 1.701 0.821 - - - - 0.880 - - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
3. RARS ENSGALG00000001850 23283 1.664 - - - - - - 0.816 0.848 - - arginyl-tRNA synthetase [Source:NCBI gene;Acc:416168]
4. AKAP9 ENSGALG00000040724 7446 1.584 0.777 - - - - - - 0.807 - - A-kinase anchoring protein 9 [Source:NCBI gene;Acc:395695]
5. PPIG ENSGALG00000009839 24114 1.563 0.783 - - - - 0.780 - - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
6. THOP1 ENSGALG00000041934 10122 1.551 - - - - - - 0.710 0.841 - - thimet oligopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:11793]
7. AGFG1 ENSGALG00000003052 4766 1.537 - - - - - - 0.742 0.795 - - ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]
8. RDX ENSGALG00000017153 6734 1.504 0.793 - - - - - - 0.711 - - radixin [Source:NCBI gene;Acc:395511]
9. MED17 ENSGALG00000017218 5821 1.484 - - - - - - 0.750 0.734 - - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
10. ESF1 ENSGALG00000034768 8610 1.483 0.776 - - - - - 0.707 - - - ESF1 nucleolar pre-rRNA processing protein homolog [Source:NCBI gene;Acc:428551]
11. ATP6AP1 ENSGALG00000008836 4343 1.449 - - - - - - 0.715 - 0.734 - ATPase H+ transporting accessory protein 1 [Source:NCBI gene;Acc:427854]
12. PDRG1 ENSGALG00000035111 9863 1.441 - - - - - - 0.701 0.740 - - p53 and DNA damage regulated 1 [Source:HGNC Symbol;Acc:HGNC:16119]
13. SCAF11 ENSGALG00000028849 2603 1.421 0.714 - - - - 0.707 - - - - SR-related CTD-associated factor 11 [Source:NCBI gene;Acc:417805]
14. KLF3 ENSGALG00000041717 2787 1.414 - - - - - - 0.711 0.703 - - Kruppel like factor 3 [Source:HGNC Symbol;Acc:HGNC:16516]
15. ZNF593 ENSGALG00000000542 79105 1.407 - - - - - - 0.706 0.701 - - zinc finger protein 593 [Source:NCBI gene;Acc:419549]
16. NDUFS3 ENSGALG00000008084 12471 0.881 - - - - - - - 0.881 - - NADH:ubiquinone oxidoreductase core subunit S3 [Source:NCBI gene;Acc:423179]
17. POP5 ENSGALG00000007124 10365 0.879 - - - - - - - 0.879 - - POP5 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:17689]
18. MRPL1 ENSGALG00000010324 5972 0.877 - - - - - - - 0.877 - - mitochondrial ribosomal protein L1 [Source:HGNC Symbol;Acc:HGNC:14275]
19. RALGPS1 ENSGALG00000000906 7207 0.865 - - - - - - - 0.865 - - Ral GEF with PH domain and SH3 binding motif 1 [Source:HGNC Symbol;Acc:HGNC:16851]
20. SLC35B1 ENSGALG00000035057 10683 0.864 - - - - - - - 0.864 - - solute carrier family 35 member B1 [Source:NCBI gene;Acc:395185]
21. ELL ENSGALG00000033513 6536 0.859 - - - - - - - 0.859 - - elongation factor for RNA polymerase II [Source:NCBI gene;Acc:420124]
22. MYCL ENSGALG00000024047 10367 0.849 - - - - - - - 0.849 - - MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
23. ZZZ3 ENSGALG00000008988 3132 0.848 - - - - - - - 0.848 - - zinc finger ZZ-type containing 3, transcript variant X5
24. EIF2B2 ENSGALG00000010301 10772 0.846 - - - - - - - 0.846 - - eukaryotic translation initiation factor 2B subunit beta [Source:NCBI gene;Acc:423359]
25. RANBP3 ENSGALG00000000577 8856 0.845 - - - - - - - 0.845 - - RAN binding protein 3 [Source:HGNC Symbol;Acc:HGNC:9850]
26. MYST2 MYST2 8078 0.842 - - - - - - - 0.842 - -
27. ANKRD50 ENSGALG00000011831 2870 0.842 - - - - - - - 0.842 - - ankyrin repeat domain 50 [Source:HGNC Symbol;Acc:HGNC:29223]
28. ALDH7A1 ENSGALG00000008229 5891 0.839 - - - - - - - 0.839 - - aldehyde dehydrogenase 7 family member A1 [Source:HGNC Symbol;Acc:HGNC:877]
29. FBXW7 ENSGALG00000010103 5982 0.838 - - - - - - - 0.838 - - F-box and WD repeat domain containing 7 [Source:HGNC Symbol;Acc:HGNC:16712]
30. TRIM33 ENSGALG00000001976 7404 0.838 - - - - - - - 0.838 - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
31. ALDH5A1 ENSGALG00000032544 4924 0.837 - - - - - - - - 0.837 - aldehyde dehydrogenase 5 family member A1 [Source:HGNC Symbol;Acc:HGNC:408]
32. TXNL1 ENSGALG00000033862 13899 0.822 - - - - - - - 0.822 - - thioredoxin like 1 [Source:HGNC Symbol;Acc:HGNC:12436]
33. RNF114 ENSGALG00000008021 6078 0.818 - - - - - - - 0.818 - - ring finger protein 114 [Source:NCBI gene;Acc:414881]
34. DGUOK ENSGALG00000005961 5929 0.818 - - - - - - - 0.818 - - deoxyguanosine kinase [Source:NCBI gene;Acc:770922]
35. FBXO3 ENSGALG00000034029 15089 0.817 - - - - - - - 0.817 - - F-box protein 3 [Source:HGNC Symbol;Acc:HGNC:13582]
36. ENSGALG00000007035 ENSGALG00000007035 8473 0.816 - - - - - - - 0.816 - -
37. NEK7 ENSGALG00000002216 4532 0.811 - - - - - - - 0.811 - - NIMA related kinase 7 [Source:NCBI gene;Acc:424350]
38. TCERG1 ENSGALG00000007528 6346 0.806 0.806 - - - - - - - - - transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
39. RRAS2 ENSGALG00000005998 6467 0.806 - - - - - - - 0.806 - - RAS related 2 [Source:NCBI gene;Acc:423062]
40. SEC24C ENSGALG00000005181 11132 0.804 - - - - - - - 0.804 - - SEC24 homolog C, COPII coat complex component [Source:HGNC Symbol;Acc:HGNC:10705]
41. PABPC1 ENSGALG00000030280 23934 0.804 0.804 - - - - - - - - - poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]
42. ADIPOR2 ENSGALG00000035533 6523 0.803 - - - - - - - 0.803 - - adiponectin receptor 2 [Source:NCBI gene;Acc:418155]
43. TXN2 ENSGALG00000012532 12518 0.803 - - - - - - - 0.803 - - thioredoxin 2 [Source:NCBI gene;Acc:426978]
44. MRPS25 ENSGALG00000008506 12131 0.803 - - - - - - - 0.803 - - mitochondrial ribosomal protein S25 [Source:NCBI gene;Acc:416129]
45. gga-mir-7476 gga-mir-7476 20209 0.802 - - - - - - - 0.802 - -
46. NR2C1 ENSGALG00000011327 5109 0.802 - - - - - - - 0.802 - - nuclear receptor subfamily 2, group C, member 1 [Source:NCBI gene;Acc:373913]
47. PLEKHB2 ENSGALG00000002169 3832 0.802 - - - - - - - 0.802 - - pleckstrin homology domain containing B2 [Source:NCBI gene;Acc:424758]
48. AHSA1 ENSGALG00000010463 15252 0.802 - - - - - - 0.802 - - - activator of HSP90 ATPase activity 1 [Source:HGNC Symbol;Acc:HGNC:1189]
49. MRPL53 ENSGALG00000037867 6100 0.799 - - - - - - - 0.799 - - mitochondrial ribosomal protein L53 [Source:NCBI gene;Acc:420196]
50. MLST8 ENSGALG00000005878 8116 0.797 - - - - - - 0.797 - - - MTOR associated protein, LST8 homolog [Source:HGNC Symbol;Acc:HGNC:24825]
51. SALL4 ENSGALG00000041365 6760 0.797 - - - - - - - 0.797 - - spalt like transcription factor 4 [Source:NCBI gene;Acc:769286]
52. RNF8 ENSGALG00000023256 5495 0.797 - - - - - - - 0.797 - - ring finger protein 8 [Source:HGNC Symbol;Acc:HGNC:10071]
53. TRAPPC2 ENSGALG00000016578 8749 0.796 - - - - - - 0.796 - - - trafficking protein particle complex 2 [Source:NCBI gene;Acc:418634]
54. SURF6 ENSGALG00000038413 11178 0.796 0.796 - - - - - - - - - surfeit 6 [Source:NCBI gene;Acc:417160]
55. C7orf50 ENSGALG00000004055 5786 0.796 - - - - - - - 0.796 - - chromosome 7 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:22421]
56. NSUN2 ENSGALG00000013064 2005 0.795 - - - - - - 0.795 - - - NOP2/Sun RNA methyltransferase family member 2 [Source:NCBI gene;Acc:420938]
57. TRIAP1 ENSGALG00000007199 4921 0.792 - - - - - - 0.792 - - - TP53 regulated inhibitor of apoptosis 1 [Source:NCBI gene;Acc:416977]
58. DCXR ENSGALG00000002849 5390 0.792 - - - - - - - 0.792 - - dicarbonyl and L-xylulose reductase [Source:NCBI gene;Acc:374066]
59. BNIP3L ENSGALG00000043405 10316 0.791 - - - - - - 0.791 - - - BCL2 interacting protein 3 like [Source:NCBI gene;Acc:419522]
60. AP3M2 ENSGALG00000038155 3372 0.791 - - - - - - - 0.791 - - adaptor related protein complex 3 subunit mu 2 [Source:HGNC Symbol;Acc:HGNC:570]
61. C15ORF23 C15ORF23 14264 0.791 - - - - - - - 0.791 - -
62. WBP1L ENSGALG00000041010 3681 0.791 - - - - - - - 0.791 - - WW domain binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:23510]
63. ENSGALG00000005727 ENSGALG00000005727 4334 0.791 - - - - - - - 0.791 - -
64. TOR1A ENSGALG00000004165 4487 0.788 - - - - - - - 0.788 - - torsin family 1 member A [Source:NCBI gene;Acc:417190]
65. AKR1B1L ENSGALG00000003466 6237 0.788 - - - - - - - 0.788 - - aldo-keto reductase family 1 member E2 [Source:NCBI gene;Acc:418171]
66. EAPP ENSGALG00000010007 5080 0.787 - - - - - - - 0.787 - - E2F associated phosphoprotein [Source:NCBI gene;Acc:423319]
67. FBXW5 ENSGALG00000030831 5927 0.787 - - - - - - 0.787 - - - F-box and WD repeat domain containing 5 [Source:NCBI gene;Acc:417289]
68. FYTTD1 ENSGALG00000007581 9341 0.785 - - - - - - 0.785 - - - forty-two-three domain containing 1 [Source:NCBI gene;Acc:424921]
69. EMG1 ENSGALG00000014568 8102 0.784 - - - - - - 0.784 - - - EMG1, N1-specific pseudouridine methyltransferase [Source:NCBI gene;Acc:418292]
70. PPP2R5A ENSGALG00000009828 10309 0.784 - - - - - - - 0.784 - - protein phosphatase 2 regulatory subunit B'alpha [Source:HGNC Symbol;Acc:HGNC:9309]
71. PNISR ENSGALG00000015483 7711 0.783 0.783 - - - - - - - - - PNN interacting serine and arginine rich protein [Source:NCBI gene;Acc:421796]
72. LTV1 ENSGALG00000013765 2917 0.782 - - - - - - - 0.782 - - LTV1 ribosome biogenesis factor
73. GAS41 GAS41 9941 0.78 - - - - - - - 0.780 - -
74. ASAP1 ENSGALG00000037618 2887 0.78 - - - - - - - 0.780 - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 [Source:HGNC Symbol;Acc:HGNC:2720]
75. ZFR ENSGALG00000003235 8466 0.779 - - - - - - - 0.779 - - zinc finger RNA binding protein, transcript variant X3
76. SNX4 ENSGALG00000012052 11634 0.779 - - - - - - - 0.779 - - sorting nexin 4 [Source:HGNC Symbol;Acc:HGNC:11175]
77. FZD6 ENSGALG00000030626 3336 0.778 - - - - - - - - 0.778 - frizzled class receptor 6 [Source:NCBI gene;Acc:378788]
78. BTAF1 ENSGALG00000030598 3556 0.778 - - - - - - - 0.778 - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
79. BET1L ENSGALG00000004172 5305 0.776 - - - - - - 0.776 - - - Bet1 golgi vesicular membrane trafficking protein like [Source:NCBI gene;Acc:422985]
80. MRPS18C ENSGALG00000023191 6293 0.776 - - - - - - - 0.776 - - mitochondrial ribosomal protein S18C [Source:NCBI gene;Acc:770813]
81. NOL12 ENSGALG00000012410 5658 0.775 - - - - - - - 0.775 - - nucleolar protein 12
82. TALPID3 TALPID3 1896 0.775 - - - - - - - 0.775 - -
83. KIAA0355 ENSGALG00000004949 4352 0.775 - - - - - - 0.775 - - - KIAA0355 [Source:HGNC Symbol;Acc:HGNC:29016]
84. FAM217B ENSGALG00000026542 2066 0.774 - - - - - - - 0.774 - - family with sequence similarity 217 member B [Source:HGNC Symbol;Acc:HGNC:16170]
85. TMLHE ENSGALG00000007443 3619 0.774 - - - - - - - 0.774 - - trimethyllysine hydroxylase, epsilon [Source:NCBI gene;Acc:422296]
86. GRAMD1C ENSGALG00000035629 2494 0.774 - - - - - - - 0.774 - - GRAM domain containing 1C [Source:HGNC Symbol;Acc:HGNC:25252]
87. KNOP1 ENSGALG00000002042 6251 0.774 0.774 - - - - - - - - - lysine-rich nucleolar protein 1, transcript variant X1
88. SMC2 ENSGALG00000015691 34013 0.774 0.774 - - - - - - - - - structural maintenance of chromosomes 2 [Source:NCBI gene;Acc:396156]
89. SAR1B ENSGALG00000038753 6493 0.773 - - - - - - 0.773 - - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
90. EGFL7 ENSGALG00000043499 6272 0.773 - - - - - - - 0.773 - - EGF like domain multiple 7 [Source:NCBI gene;Acc:417137]
91. DARS2 ENSGALG00000023749 2386 0.772 - - - - - - - 0.772 - - aspartyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25538]
92. HYOU1 ENSGALG00000007659 3555 0.772 - - - - - - - 0.772 - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
93. EHD3 ENSGALG00000009086 14407 0.771 - - - - - - 0.771 - - - EH domain containing 3 [Source:NCBI gene;Acc:421306]
94. NAP1L1 ENSGALG00000010238 14506 0.77 0.770 - - - - - - - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
95. ADAT2 ENSGALG00000019976 4169 0.77 - - - - - - - 0.770 - - adenosine deaminase, tRNA specific 2
96. FARP1 ENSGALG00000016886 13132 0.769 - - - - - - 0.769 - - - FERM, ARH/RhoGEF and pleckstrin domain protein 1 [Source:NCBI gene;Acc:418781]
97. POLA1 ENSGALG00000016312 9440 0.769 - - - - - - - 0.769 - - DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]
98. METTL16 ENSGALG00000014901 3720 0.769 - - - - - - - 0.769 - - methyltransferase like 16 [Source:NCBI gene;Acc:431184]
99. SEPSECS ENSGALG00000014386 2611 0.769 - - - - - - - 0.769 - - Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:NCBI gene;Acc:422808]
100. NEK6 ENSGALG00000001118 20333 0.768 - - - - - - 0.768 - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]

There are 322 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA