Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for USP1

Gene Name Gene ID Reads Annotation
USP1 ENSGALG00000010957 8297 ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]











Genes with expression patterns similar to USP1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. USP1 ENSGALG00000010957 8297 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
2. ABCC1 ENSGALG00000006646 2596 1.784 - - - - 0.993 - 0.791 - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
3. LUC7L2 ENSGALG00000036238 11817 1.752 - - - - 0.991 - 0.761 - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
4. RALB ENSGALG00000026493 14590 1.722 - - - - 0.982 - 0.740 - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
5. UQCRC2 ENSGALG00000002490 23477 1.702 - - - - 0.986 - 0.716 - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
6. EIF3L ENSGALG00000012296 42627 1.683 - - - - 0.955 - 0.728 - - - eukaryotic translation initiation factor 3 subunit L [Source:NCBI gene;Acc:418033]
7. DUT ENSGALG00000038032 34659 1.671 - - - - 0.821 - 0.850 - - - deoxyuridine triphosphatase [Source:NCBI gene;Acc:769338]
8. ZMAT2 ENSGALG00000041746 23601 1.618 - - - - 0.854 - 0.764 - - - zinc finger matrin-type 2 [Source:NCBI gene;Acc:427602]
9. NDST2 ENSGALG00000005107 4224 0.995 - - - - 0.995 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
10. MRPL46 ENSGALG00000006782 5033 0.995 - - - - 0.995 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
11. BCL9 ENSGALG00000037655 4620 0.994 - - - - 0.994 - - - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
12. gga-mir-6584 ENSGALG00000028834 1481 0.994 - - - - 0.994 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
13. RNF113A ENSGALG00000000538 3985 0.994 - - - - 0.994 - - - - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
14. RAE1 ENSGALG00000007653 8930 0.994 - - - - 0.994 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
15. WHSC1L1 4065 0.994 - - - - 0.994 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
16. MAP1B ENSGALG00000014999 6288 0.994 - - - - 0.994 - - - - - microtubule associated protein 1B
17. MYEOV2 MYEOV2 5155 0.994 - - - - 0.994 - - - - -
18. HTRA3 ENSGALG00000034673 512 0.994 - - - - 0.994 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
19. TBC1D7 ENSGALG00000012731 4891 0.994 - - - - 0.994 - - - - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
20. MRPL22 ENSGALG00000003919 2760 0.993 - - - - 0.993 - - - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
21. HMGB3 ENSGALG00000009071 12011 0.993 - - - - 0.993 - - - - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
22. CCDC59 ENSGALG00000028648 9272 0.993 - - - - 0.993 - - - - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
23. NOL6 ENSGALG00000030730 7191 0.993 - - - - 0.993 - - - - - nucleolar protein 6
24. TMEM18 ENSGALG00000028744 11779 0.993 - - - - 0.993 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
25. PPAPDC1B PPAPDC1B 6698 0.993 - - - - 0.993 - - - - -
26. HYOU1 ENSGALG00000007659 3555 0.993 - - - - 0.993 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
27. IBA57 ENSGALG00000005328 4362 0.993 - - - - 0.993 - - - - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
28. EPB41L1 ENSGALG00000034171 3616 0.993 - - - - 0.993 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
29. SEC61A2 ENSGALG00000036300 4235 0.993 - - - - 0.993 - - - - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
30. OPTC ENSGALG00000003554 3698 0.992 - - - - 0.992 - - - - - opticin [Source:NCBI gene;Acc:395130]
31. C4orf27 C4orf27 16724 0.992 - - - - 0.992 - - - - -
32. MED1 ENSGALG00000001708 9556 0.992 - - - - 0.992 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
33. DNAJC2 ENSGALG00000008249 28064 0.992 - - - - 0.992 - - - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
34. TM2D2 ENSGALG00000003356 7088 0.991 - - - - 0.991 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
35. TMEM39B ENSGALG00000003287 4125 0.991 - - - - 0.991 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
36. NSG1 ENSGALG00000015010 5829 0.991 - - - - 0.991 - - - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
37. PHKA1 ENSGALG00000004801 2510 0.991 - - - - 0.991 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
38. AGPAT3 ENSGALG00000031932 6903 0.991 - - - - 0.991 - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
39. KCTD9 ENSGALG00000000275 3455 0.99 - - - - 0.990 - - - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
40. THBS1 ENSGALG00000009626 3521 0.99 - - - - 0.990 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
41. MRPS11 ENSGALG00000006777 16009 0.99 - - - - 0.990 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
42. C15H12ORF49 C15H12ORF49 13250 0.989 - - - - 0.989 - - - - -
43. TRIM33 ENSGALG00000001976 7404 0.989 - - - - 0.989 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
44. TBRG4 ENSGALG00000038102 9269 0.989 - - - - 0.989 - - - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
45. TNPO3 ENSGALG00000039420 5178 0.987 - - - - 0.987 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
46. HOXB3 ENSGALG00000043219 5198 0.987 - - - - 0.987 - - - - - homeobox B3 [Source:NCBI gene;Acc:395502]
47. PGAM5 ENSGALG00000002137 7700 0.987 - - - - 0.987 - - - - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
48. ETF1 ENSGALG00000002262 14560 0.987 - - - - 0.987 - - - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
49. SAMM50 ENSGALG00000014194 20437 0.987 - - - - 0.987 - - - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
50. RILPL2 ENSGALG00000003321 5632 0.986 - - - - 0.986 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
51. VPS8 ENSGALG00000006704 5419 0.986 - - - - 0.986 - - - - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
52. CENPE ENSGALG00000013208 12337 0.986 - - - - 0.986 - - - - - centromere protein E, transcript variant X4
53. SPG21 ENSGALG00000007262 8050 0.985 - - - - 0.985 - - - - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
54. M6PR ENSGALG00000031681 9442 0.985 - - - - 0.985 - - - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
55. RAB21 ENSGALG00000010183 7718 0.985 - - - - 0.985 - - - - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
56. ESRP2 ENSGALG00000003374 4436 0.984 - - - - 0.984 - - - - - epithelial splicing regulatory protein 2 [Source:NCBI gene;Acc:415710]
57. MCM4 ENSGALG00000012915 13151 0.983 - - - - 0.983 - - - - - minichromosome maintenance complex component 4
58. MORN4 ENSGALG00000006149 7772 0.983 - - - - 0.983 - - - - - MORN repeat containing 4 [Source:NCBI gene;Acc:425290]
59. INCENP ENSGALG00000007537 16617 0.983 - - - - 0.983 - - - - - inner centromere protein [Source:NCBI gene;Acc:396270]
60. NUP37 ENSGALG00000012759 9985 0.982 - - - - 0.982 - - - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
61. OAF ENSGALG00000006715 12518 0.982 - - - - 0.982 - - - - - out at first homolog [Source:NCBI gene;Acc:395161]
62. FAM98A ENSGALG00000010428 9585 0.98 - - - - 0.980 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
63. TCF7L2 ENSGALG00000008883 13688 0.978 - - - - 0.978 - - - - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]
64. RBM26 ENSGALG00000016910 13769 0.977 - - - - 0.977 - - - - - RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327]
65. CREPT CREPT 17142 0.977 - - - - 0.977 - - - - -
66. UBE2G2 ENSGALG00000005667 12689 0.976 - - - - 0.976 - - - - - ubiquitin conjugating enzyme E2 G2 [Source:NCBI gene;Acc:424837]
67. SEC63 ENSGALG00000015308 11596 0.976 - - - - 0.976 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
68. PSMD14 ENSGALG00000011128 13335 0.973 - - - - 0.973 - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
69. BRP44L BRP44L 30452 0.973 - - - - 0.973 - - - - -
70. PUF60 ENSGALG00000039901 26902 0.971 - - - - 0.971 - - - - - poly(U) binding splicing factor 60 [Source:NCBI gene;Acc:426402]
71. CDC5L ENSGALG00000016704 22893 0.969 - - - - 0.969 - - - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
72. ABCF2 ENSGALG00000034573 15639 0.967 - - - - 0.967 - - - - - ATP binding cassette subfamily F member 2 [Source:NCBI gene;Acc:426038]
73. SMC3 ENSGALG00000008585 16618 0.965 - - - - 0.965 - - - - - structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
74. CWC22 ENSGALG00000009001 5984 0.962 - - - - 0.962 - - - - - CWC22 spliceosome associated protein homolog [Source:NCBI gene;Acc:424123]
75. ENSGALG00000026041 ENSGALG00000026041 13390 0.961 - - - - 0.961 - - - - -
76. MTF2 ENSGALG00000043087 15225 0.961 - - - - 0.961 - - - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
77. NOLC1 ENSGALG00000041124 12765 0.959 - - - - - - - 0.959 - - nucleolar and coiled-body phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:15608]
78. SRM ENSGALG00000003039 8331 0.959 - - - - - - - 0.959 - - spermidine synthase [Source:HGNC Symbol;Acc:HGNC:11296]
79. ZEB1 ENSGALG00000007260 9277 0.958 - - - - 0.958 - - - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
80. GNL3 ENSGALG00000001613 10911 0.956 - - - - - - - 0.956 - - G protein nucleolar 3 [Source:HGNC Symbol;Acc:HGNC:29931]
81. EPFIP1L ENSGALG00000007683 18050 0.955 - - - - 0.955 - - - - - re-mRNA 3'-end-processing factor FIP1-like, transcript variant X2
82. SMNDC1 ENSGALG00000008561 14415 0.953 - - - - 0.953 - - - - - survival motor neuron domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16900]
83. TRIAP1 ENSGALG00000007199 4921 0.951 - - - - - - - 0.951 - - TP53 regulated inhibitor of apoptosis 1 [Source:NCBI gene;Acc:416977]
84. RPS6 ENSGALG00000015082 307412 0.951 - - - - 0.951 - - - - - ribosomal protein S6 [Source:NCBI gene;Acc:396148]
85. NF2 ENSGALG00000008073 4597 0.948 - - - - - - - 0.948 - - neurofibromin 2 [Source:NCBI gene;Acc:395158]
86. ENSGALG00000000360 ENSGALG00000000360 15320 0.946 - - - - 0.946 - - - - -
87. PCMT1 ENSGALG00000012388 7778 0.945 - - - - - - - 0.945 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:NCBI gene;Acc:428607]
88. EIF3H ENSGALG00000040522 39919 0.944 - - - - 0.944 - - - - - eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
89. PSMG3 ENSGALG00000004203 11240 0.94 - - - - - - - 0.940 - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
90. UBL3 ENSGALG00000017084 7417 0.935 - - - - - - - 0.935 - - ubiquitin like 3 [Source:NCBI gene;Acc:418921]
91. PAX-7 PAX-7 3856 0.932 - - - - 0.932 - - - - -
92. C9orf85 ENSGALG00000026001 4110 0.924 - - - - - - - 0.924 - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
93. GPI ENSGALG00000004956 40030 0.916 - - - - 0.916 - - - - - glucose-6-phosphate isomerase [Source:NCBI gene;Acc:415783]
94. RUNX1T1 ENSGALG00000033091 17529 0.916 - - - - 0.916 - - - - - RUNX1 translocation partner 1 [Source:NCBI gene;Acc:395503]
95. XRN2 ENSGALG00000008372 22164 0.907 - - - - 0.907 - - - - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
96. MARCKSL1 ENSGALG00000032335 88728 0.902 - - - - 0.902 - - - - - MARCKS like 1 [Source:NCBI gene;Acc:770764]
97. ATP5C1 53961 0.897 - - - - 0.897 - - - - - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1, transcript variant X1
98. AHCY ENSGALG00000033677 35555 0.896 - - - - 0.896 - - - - - adenosylhomocysteinase [Source:HGNC Symbol;Acc:HGNC:343]
99. SEC61G ENSGALG00000037863 83362 0.884 - - - - 0.884 - - - - - Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
100. PKM ENSGALG00000001992 93960 0.882 - - - - 0.882 - - - - - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]

There are 251 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA